Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47554 * 2 1 4 4 C 1.47204 * 109.47222 * 119.99980 * 2 1 3 5 5 N 2.60800 * 109.47246 * 119.99640 * 2 1 3 6 6 C 1.50696 * 109.47357 * 239.99565 * 2 1 3 7 7 O 1.21283 * 120.00575 * 240.00196 * 6 2 1 8 8 N 1.34783 * 119.99748 * 60.27185 * 6 2 1 9 9 C 1.46503 * 120.00088 * 179.72401 * 8 6 2 10 10 C 1.52994 * 109.47072 * 174.96047 * 9 8 6 11 11 N 1.46500 * 110.01846 * 55.13697 * 10 9 8 12 12 C 1.34781 * 119.99427 * 65.17913 * 11 10 9 13 13 O 1.21277 * 120.00092 * 354.90379 * 12 11 10 14 14 C 1.50702 * 119.99836 * 174.90138 * 12 11 10 15 15 S 1.80991 * 109.47228 * 180.02562 * 14 12 11 16 16 C 1.76208 * 100.00147 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99456 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47252 * 120.00182 * 20 18 16 23 23 H 1.48499 * 109.47096 * 240.00554 * 20 18 16 24 24 C 1.54269 * 110.03096 * 293.69722 * 10 9 8 25 25 C 1.54889 * 104.19420 * 217.10559 * 24 10 9 26 26 C 1.54891 * 102.75063 * 37.94235 * 25 24 10 27 27 C 1.53878 * 110.03285 * 176.53294 * 10 9 8 28 28 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47281 * 300.00042 * 1 2 3 30 30 H 1.08995 * 109.47569 * 60.00420 * 1 2 3 31 31 H 0.97002 * 119.99688 * 359.72787 * 8 6 2 32 32 H 1.08996 * 109.46876 * 294.96380 * 9 8 6 33 33 H 1.08998 * 109.46543 * 54.95876 * 9 8 6 34 34 H 0.96993 * 120.00561 * 245.17586 * 11 10 9 35 35 H 1.09004 * 109.47251 * 300.00501 * 14 12 11 36 36 H 1.09006 * 109.46439 * 59.99930 * 14 12 11 37 37 H 0.96992 * 120.00206 * 179.97438 * 19 18 16 38 38 H 1.08990 * 110.48853 * 335.78429 * 24 10 9 39 39 H 1.09002 * 110.48422 * 98.43313 * 24 10 9 40 40 H 1.09005 * 110.75728 * 279.62913 * 25 24 10 41 41 H 1.08999 * 110.75717 * 156.25708 * 25 24 10 42 42 H 1.09000 * 110.49027 * 203.37813 * 26 25 24 43 43 H 1.09006 * 110.48354 * 80.73771 * 26 25 24 44 44 H 1.09001 * 110.03106 * 238.57306 * 27 10 9 45 45 H 1.09004 * 110.02885 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2293 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7296 -1.6966 -1.1191 8 7 1.7113 -0.2469 -2.4545 9 6 2.2046 -0.9340 -3.6507 10 6 1.5983 -0.2866 -4.8973 11 7 1.8800 1.1511 -4.9031 12 6 3.1502 1.5884 -5.0118 13 8 4.0670 0.7944 -5.0117 14 6 3.4313 3.0640 -5.1336 15 16 5.2170 3.3294 -5.2624 16 6 5.2569 5.0865 -5.3885 17 1 4.3359 5.6501 -5.3708 18 6 6.4721 5.7461 -5.5093 19 7 7.5947 5.0592 -5.5303 20 14 6.5145 7.6089 -5.6422 21 1 5.1286 8.1403 -5.5935 22 1 7.2985 8.1681 -4.5118 23 1 7.1499 7.9992 -6.9263 24 6 0.0749 -0.5277 -4.9301 25 6 -0.2426 -0.7471 -6.4302 26 6 0.9812 -1.5582 -6.9236 27 6 2.1745 -0.9418 -6.1647 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.1536 0.5418 -2.5435 32 1 3.2910 -0.8558 -3.6925 33 1 1.9172 -1.9846 -3.6105 34 1 1.1524 1.7882 -4.8288 35 1 2.9409 3.4549 -6.0251 36 1 3.0494 3.5803 -4.2528 37 1 8.4439 5.5201 -5.6151 38 1 -0.1834 -1.4147 -4.3518 39 1 -0.4576 0.3445 -4.5511 40 1 -0.3108 0.2063 -6.9541 41 1 -1.1609 -1.3218 -6.5506 42 1 1.1101 -1.4381 -7.9993 43 1 0.8692 -2.6118 -6.6672 44 1 2.6631 -0.1900 -6.7846 45 1 2.8864 -1.7208 -5.8917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499434199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = -87.861105 kcal Electronic energy + Delta-G solvation = -27232.432841 eV Core-core repulsion = 23374.465983 eV Total energy + Delta-G solvation = -3857.966858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72702 -40.72659 -38.76267 -37.69946 -35.73621 -34.59053 -34.52279 -34.07030 -31.23549 -29.73493 -29.27357 -27.61949 -26.37572 -25.37018 -22.52088 -21.96574 -21.49082 -20.50834 -19.76784 -19.20091 -18.20937 -17.69430 -17.50035 -16.85506 -16.64044 -16.59868 -16.10190 -16.00436 -15.76906 -15.40628 -15.03559 -14.78145 -14.59027 -14.38959 -14.16550 -14.14429 -13.79269 -13.71561 -13.45063 -13.23238 -13.12110 -12.92672 -12.79889 -12.72844 -12.56319 -12.39447 -12.24935 -12.00122 -11.90193 -11.84182 -11.65991 -11.37868 -11.13708 -10.99885 -10.75789 -10.19574 -10.14602 -10.00540 -8.61518 -8.32236 -6.08788 1.30661 1.38112 1.42647 1.48227 1.51234 1.60804 1.70143 1.73101 2.21657 2.30137 2.40858 2.78725 3.02536 3.35924 3.49981 3.57609 3.72676 3.84223 3.95354 4.05188 4.18700 4.30417 4.39447 4.44365 4.57041 4.59248 4.61441 4.69666 4.81563 4.86792 4.90367 4.95741 4.97689 5.12949 5.15443 5.28969 5.30382 5.31750 5.38026 5.45021 5.54835 5.68907 6.22552 6.35890 6.52619 6.65244 7.09931 7.15264 7.39667 8.76846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.003248 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.054107 B = 8618.113652 C =10708.818429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.006 4.006 3 H 0.178 0.822 4 C 0.241 3.759 5 N -0.477 5.477 6 C 0.519 3.481 7 O -0.588 6.588 8 N -0.694 5.694 9 C 0.117 3.883 10 C 0.173 3.827 11 N -0.703 5.703 12 C 0.537 3.463 13 O -0.553 6.553 14 C -0.129 4.129 15 S -0.157 6.157 16 C -0.541 4.541 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 0.996 3.004 21 H -0.253 1.253 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.124 4.124 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.420 0.580 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.420 0.580 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.269 0.731 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.558 -6.583 1.702 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.195 0.805 4 C -0.078 4.078 5 N -0.153 5.153 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.346 5.346 9 C -0.008 4.008 10 C 0.087 3.913 11 N -0.359 5.359 12 C 0.323 3.677 13 O -0.430 6.430 14 C -0.280 4.280 15 S 0.070 5.930 16 C -0.689 4.689 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.550 5.550 20 Si 0.818 3.182 21 H -0.176 1.176 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.164 4.164 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.258 0.742 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.259 0.741 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.821 -9.404 3.136 26.727 hybrid contribution -0.183 2.366 -0.524 2.430 sum -25.003 -7.038 2.612 26.106 Atomic orbital electron populations 1.21909 0.86046 1.04573 1.06999 1.19206 1.01271 1.00721 0.81825 0.80544 1.28938 0.92167 0.92638 0.94023 1.81189 1.09693 1.09931 1.14528 1.20537 0.79587 0.84039 0.85413 1.90792 1.39693 1.28976 1.87339 1.45496 1.52914 1.32197 1.03979 1.21762 0.98741 0.96674 0.83606 1.21230 0.97493 0.79851 0.92768 1.45922 1.07099 1.07415 1.75437 1.19979 0.83386 0.89353 0.75027 1.90725 1.45794 1.57273 1.49230 1.23390 1.01653 0.96280 1.06721 1.85692 1.02326 1.08840 1.96165 1.23243 0.96181 0.91763 1.57684 0.89703 1.26108 0.94185 1.04968 0.94022 1.70196 0.98484 1.38178 1.48169 0.84941 0.79123 0.76287 0.77834 1.17608 1.20252 1.20291 1.22724 0.89475 1.04722 0.98178 1.22502 0.97649 1.00524 0.94850 1.22400 0.94081 1.00059 0.99564 1.22406 0.98603 0.99686 0.95662 0.91833 0.88582 0.86371 0.74169 0.94035 0.90268 0.74132 0.87484 0.86806 0.92203 0.88602 0.87263 0.90978 0.89286 0.91789 0.90693 0.93317 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.39 9.05 71.98 0.65 0.26 16 2 C -0.01 -0.07 3.10 -13.35 -0.04 -0.11 16 3 H 0.18 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.24 5.40 13.88 89.44 1.24 6.64 16 5 N -0.48 -14.23 18.54 20.01 0.37 -13.86 16 6 C 0.52 10.38 7.14 87.65 0.63 11.00 16 7 O -0.59 -19.20 16.02 -3.04 -0.05 -19.25 16 8 N -0.69 -10.13 5.12 -463.07 -2.37 -12.50 16 9 C 0.12 2.45 4.06 86.38 0.35 2.80 16 10 C 0.17 2.70 0.57 4.33 0.00 2.71 16 11 N -0.70 -11.75 4.50 -419.64 -1.89 -13.64 16 12 C 0.54 16.35 6.89 87.66 0.60 16.95 16 13 O -0.55 -22.77 13.13 -3.02 -0.04 -22.81 16 14 C -0.13 -4.43 6.16 71.24 0.44 -4.00 16 15 S -0.16 -8.31 20.57 -56.49 -1.16 -9.47 16 16 C -0.54 -29.59 9.50 67.95 0.65 -28.95 16 17 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 18 C 0.01 0.65 5.49 84.86 0.47 1.11 16 19 N -0.91 -55.51 13.22 21.65 0.29 -55.22 16 20 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 21 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 24 C -0.11 -0.69 5.74 31.67 0.18 -0.51 16 25 C -0.12 -0.90 6.91 31.89 0.22 -0.68 16 26 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 27 C -0.12 -2.62 5.22 31.32 0.16 -2.46 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.10 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.12 -0.47 7.57 -2.39 -0.02 -0.49 16 31 H 0.42 2.54 7.42 -92.71 -0.69 1.85 16 32 H 0.04 1.34 6.56 -2.39 -0.02 1.33 16 33 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 34 H 0.42 3.38 8.23 -92.71 -0.76 2.61 16 35 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.11 3.32 8.14 -2.39 -0.02 3.31 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.10 0.48 7.78 -2.39 -0.02 0.46 16 39 H 0.11 -0.02 7.70 -2.39 -0.02 -0.04 16 40 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.05 1.33 6.99 -2.39 -0.02 1.31 16 45 H 0.05 1.33 7.67 -2.38 -0.02 1.31 16 Total: -1.00 -93.14 389.88 2.52 -90.63 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -0.42 Total: 8.35 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.77 Total: 3.32 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -3.60 Total: -95.22 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.09 Total: -42.07 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -93.14 2.52 -90.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499434199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.767 kcal (2) G-P(sol) polarization free energy of solvation -93.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds