Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 N 1.46493 * 109.47189 * 185.00095 * 4 2 1 6 6 C 1.34775 * 120.00236 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99631 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00099 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47075 * 60.00523 * 8 6 5 10 10 C 1.52989 * 109.47372 * 299.99901 * 8 6 5 11 11 N 1.46506 * 109.46878 * 179.97438 * 8 6 5 12 12 C 1.36338 * 125.63391 * 59.69908 * 11 8 6 13 13 C 1.34850 * 108.21667 * 179.82908 * 12 11 8 14 14 C 1.40888 * 107.41926 * 0.42285 * 13 12 11 15 15 C 1.34847 * 107.41384 * 359.73466 * 14 13 12 16 16 N 1.46500 * 109.47007 * 120.00377 * 2 1 3 17 17 C 1.34773 * 120.00050 * 274.99876 * 16 2 1 18 18 O 1.21272 * 120.00064 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99932 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47078 * 180.02562 * 19 17 16 21 21 C 1.76209 * 100.00010 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99842 * 359.97438 * 21 20 19 23 23 C 1.38793 * 119.99682 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00605 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99640 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47241 * 90.00394 * 25 23 21 27 27 H 1.48502 * 109.46888 * 210.00518 * 25 23 21 28 28 H 1.48498 * 109.47369 * 330.00065 * 25 23 21 29 29 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 32 32 H 1.08997 * 109.47395 * 305.00572 * 4 2 1 33 33 H 1.09004 * 109.46579 * 64.99848 * 4 2 1 34 34 H 0.97005 * 119.99996 * 359.97438 * 5 4 2 35 35 H 1.08995 * 109.47473 * 300.00156 * 10 8 6 36 36 H 1.09002 * 109.47494 * 60.00216 * 10 8 6 37 37 H 1.09000 * 109.47650 * 179.97438 * 10 8 6 38 38 H 1.08004 * 125.89330 * 359.95860 * 12 11 8 39 39 H 1.08005 * 126.28919 * 180.16119 * 13 12 11 40 40 H 1.07994 * 126.29191 * 179.73606 * 14 13 12 41 41 H 1.08003 * 125.88944 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00030 * 94.99975 * 16 2 1 43 43 H 1.09006 * 109.47286 * 300.00269 * 19 17 16 44 44 H 1.08999 * 109.47446 * 60.00043 * 19 17 16 45 45 H 0.96998 * 120.00273 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5699 -1.8832 -3.1400 8 6 5.6750 -1.5359 -2.1311 9 1 5.9637 -2.0991 -1.2436 10 6 6.2846 -0.1342 -2.0665 11 7 6.1633 -2.2266 -3.3273 12 6 5.9812 -1.8127 -4.6135 13 6 6.5760 -2.7045 -5.4316 14 6 7.1379 -3.7108 -4.6213 15 6 6.8700 -3.3925 -3.3386 16 7 2.0183 -0.6907 1.1961 17 6 2.1470 -0.0184 2.3571 18 8 1.8591 1.1583 2.4115 19 6 2.6499 -0.7288 3.5874 20 16 2.7099 0.4339 4.9732 21 6 3.3132 -0.6315 6.2405 22 1 3.5226 -1.6678 6.0204 23 6 3.5191 -0.1386 7.5216 24 7 3.2635 1.1243 7.7900 25 14 4.1593 -1.2679 8.8649 26 1 5.6437 -1.2283 8.8792 27 1 3.6394 -0.8163 10.1806 28 1 3.7037 -2.6568 8.6029 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.9824 -0.4622 -0.4320 35 1 5.9960 0.4289 -2.9539 36 1 5.9213 0.3794 -1.1763 37 1 7.3709 -0.2120 -2.0225 38 1 5.4535 -0.9228 -4.9236 39 1 6.6113 -2.6582 -6.5101 40 1 7.6829 -4.5777 -4.9644 41 1 7.1640 -3.9630 -2.4700 42 1 2.2490 -1.6319 1.1525 43 1 1.9777 -1.5512 3.8324 44 1 3.6492 -1.1206 3.3978 45 1 3.4071 1.4686 8.6854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502026874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -23.176943 kcal Electronic energy + Delta-G solvation = -26299.740009 eV Core-core repulsion = 22444.578067 eV Total energy + Delta-G solvation = -3855.161942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65002 -40.10083 -39.30438 -36.53277 -34.75848 -33.85513 -32.50410 -31.59214 -29.69712 -28.89616 -28.70352 -26.94610 -25.56179 -24.61530 -22.00954 -21.35695 -20.65038 -20.49959 -19.88096 -18.33042 -17.82894 -17.32198 -16.73252 -16.50059 -15.81839 -15.69686 -15.03945 -14.87278 -14.80686 -14.42999 -14.16946 -13.87262 -13.74121 -13.46625 -13.33649 -13.07964 -12.97265 -12.84088 -12.65410 -12.57499 -12.46599 -12.26317 -12.16172 -12.02406 -11.96045 -11.28601 -11.12754 -11.09868 -10.82718 -10.36313 -9.89663 -9.64240 -9.50140 -9.17680 -9.11556 -8.80478 -8.33527 -8.26792 -6.59154 -6.29214 -4.00649 1.97222 2.07260 2.44293 2.82237 2.89273 2.94901 2.96304 3.16780 3.22187 3.25694 3.57179 4.02723 4.13026 4.25556 4.28732 4.31422 4.73468 4.77557 4.97178 5.02512 5.03303 5.04548 5.06387 5.09165 5.22409 5.32674 5.41617 5.44605 5.49371 5.50667 5.55140 5.75604 5.81058 5.85190 6.02021 6.06764 6.14517 6.15884 6.43788 6.84649 6.90137 7.06279 7.17851 7.50181 7.52615 7.67227 8.27513 8.43417 9.16387 10.78094 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002239 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.393053 B =12504.041714 C =14014.011576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.114 3.886 5 N -0.723 5.723 6 C 0.503 3.497 7 O -0.519 6.519 8 C 0.115 3.885 9 H 0.125 0.875 10 C -0.160 4.160 11 N -0.433 5.433 12 C 0.016 3.984 13 C -0.209 4.209 14 C -0.197 4.197 15 C -0.019 4.019 16 N -0.739 5.739 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.155 4.155 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -6.138 -22.267 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.114 0.886 4 C -0.010 4.010 5 N -0.377 5.377 6 C 0.286 3.714 7 O -0.393 6.393 8 C 0.008 3.992 9 H 0.143 0.857 10 C -0.218 4.218 11 N -0.110 5.110 12 C -0.114 4.114 13 C -0.234 4.234 14 C -0.222 4.222 15 C -0.148 4.148 16 N -0.394 5.394 17 C 0.320 3.680 18 O -0.386 6.386 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.770 -4.169 -22.429 22.981 hybrid contribution 0.959 -2.441 1.237 2.900 sum 3.729 -6.610 -21.192 22.510 Atomic orbital electron populations 1.22119 0.94016 1.02624 1.03306 1.21141 0.95166 0.97854 0.83161 0.88580 1.21755 0.79327 1.01793 0.98151 1.45948 1.08058 1.59861 1.23799 1.20636 0.89540 0.78297 0.82892 1.90792 1.69464 1.46370 1.32692 1.21269 0.91736 0.96915 0.89262 0.85716 1.22148 1.02637 0.92975 1.04043 1.43704 1.42584 1.19650 1.05080 1.21626 1.05227 1.02115 0.82404 1.20844 1.06279 0.97398 0.98833 1.20855 1.07409 1.01579 0.92348 1.21794 1.03578 0.90071 0.99321 1.46176 1.69682 1.14036 1.09527 1.20351 0.76795 0.87233 0.83671 1.90715 1.47962 1.15731 1.84231 1.23545 1.03620 1.04983 0.98387 1.85410 1.86379 1.12684 0.98753 1.22851 1.51110 0.98150 0.96389 0.90933 1.24992 0.95038 0.95554 0.97965 1.70006 1.45337 1.13243 1.21617 0.86170 0.79014 0.80182 0.80153 1.20238 1.20711 1.19694 0.91465 0.92156 0.90931 0.90603 0.89790 0.75790 0.91039 0.89820 0.90146 0.82866 0.84930 0.84844 0.82322 0.76750 0.89191 0.89273 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.13 1.21 2.73 -67.93 -0.19 1.03 16 3 H 0.10 1.03 7.58 -51.93 -0.39 0.63 16 4 C 0.11 0.88 5.23 -4.04 -0.02 0.86 16 5 N -0.72 -5.36 5.28 -60.29 -0.32 -5.68 16 6 C 0.50 4.64 7.11 -10.99 -0.08 4.56 16 7 O -0.52 -6.84 15.44 5.55 0.09 -6.75 16 8 C 0.12 0.85 3.36 -69.09 -0.23 0.61 16 9 H 0.13 0.67 8.06 -51.93 -0.42 0.25 16 10 C -0.16 -0.92 9.14 37.15 0.34 -0.58 16 11 N -0.43 -4.18 2.40 -111.26 -0.27 -4.45 16 12 C 0.02 0.17 9.56 -16.75 -0.16 0.01 16 13 C -0.21 -2.21 10.86 -39.78 -0.43 -2.65 16 14 C -0.20 -2.00 10.86 -39.78 -0.43 -2.43 16 15 C -0.02 -0.18 11.39 -16.75 -0.19 -0.38 16 16 N -0.74 -7.83 4.52 -53.81 -0.24 -8.07 16 17 C 0.53 8.55 7.81 -10.99 -0.09 8.46 16 18 O -0.51 -10.31 15.52 5.56 0.09 -10.23 16 19 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -14.68 9.50 30.94 0.29 -14.38 16 22 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 23 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 24 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 25 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.41 2.60 7.56 -40.82 -0.31 2.29 16 35 H 0.07 0.45 7.92 -51.93 -0.41 0.04 16 36 H 0.08 0.38 7.56 -51.93 -0.39 -0.01 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.40 3.34 8.60 -40.82 -0.35 2.99 16 43 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 44 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -35.91 397.29 -8.77 -44.68 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.89 Total: 3.79 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.71 Total: -6.65 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.10 Total: -42.85 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.17 Total: -16.98 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.91 -8.77 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502026874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.505 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds