Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 N 1.46493 * 109.47189 * 185.00095 * 4 2 1 6 6 C 1.34775 * 120.00236 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99631 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00099 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47075 * 60.00523 * 8 6 5 10 10 C 1.52989 * 109.47372 * 299.99901 * 8 6 5 11 11 N 1.46506 * 109.46878 * 179.97438 * 8 6 5 12 12 C 1.36338 * 125.63391 * 59.69908 * 11 8 6 13 13 C 1.34850 * 108.21667 * 179.82908 * 12 11 8 14 14 C 1.40888 * 107.41926 * 0.42285 * 13 12 11 15 15 C 1.34847 * 107.41384 * 359.73466 * 14 13 12 16 16 N 1.46500 * 109.47007 * 120.00377 * 2 1 3 17 17 C 1.34773 * 120.00050 * 274.99876 * 16 2 1 18 18 O 1.21272 * 120.00064 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99932 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47078 * 180.02562 * 19 17 16 21 21 C 1.76209 * 100.00010 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99842 * 359.97438 * 21 20 19 23 23 C 1.38793 * 119.99682 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00605 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99640 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47241 * 90.00394 * 25 23 21 27 27 H 1.48502 * 109.46888 * 210.00518 * 25 23 21 28 28 H 1.48498 * 109.47369 * 330.00065 * 25 23 21 29 29 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 32 32 H 1.08997 * 109.47395 * 305.00572 * 4 2 1 33 33 H 1.09004 * 109.46579 * 64.99848 * 4 2 1 34 34 H 0.97005 * 119.99996 * 359.97438 * 5 4 2 35 35 H 1.08995 * 109.47473 * 300.00156 * 10 8 6 36 36 H 1.09002 * 109.47494 * 60.00216 * 10 8 6 37 37 H 1.09000 * 109.47650 * 179.97438 * 10 8 6 38 38 H 1.08004 * 125.89330 * 359.95860 * 12 11 8 39 39 H 1.08005 * 126.28919 * 180.16119 * 13 12 11 40 40 H 1.07994 * 126.29191 * 179.73606 * 14 13 12 41 41 H 1.08003 * 125.88944 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00030 * 94.99975 * 16 2 1 43 43 H 1.09006 * 109.47286 * 300.00269 * 19 17 16 44 44 H 1.08999 * 109.47446 * 60.00043 * 19 17 16 45 45 H 0.96998 * 120.00273 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5699 -1.8832 -3.1400 8 6 5.6750 -1.5359 -2.1311 9 1 5.9637 -2.0991 -1.2436 10 6 6.2846 -0.1342 -2.0665 11 7 6.1633 -2.2266 -3.3273 12 6 5.9812 -1.8127 -4.6135 13 6 6.5760 -2.7045 -5.4316 14 6 7.1379 -3.7108 -4.6213 15 6 6.8700 -3.3925 -3.3386 16 7 2.0183 -0.6907 1.1961 17 6 2.1470 -0.0184 2.3571 18 8 1.8591 1.1583 2.4115 19 6 2.6499 -0.7288 3.5874 20 16 2.7099 0.4339 4.9732 21 6 3.3132 -0.6315 6.2405 22 1 3.5226 -1.6678 6.0204 23 6 3.5191 -0.1386 7.5216 24 7 3.2635 1.1243 7.7900 25 14 4.1593 -1.2679 8.8649 26 1 5.6437 -1.2283 8.8792 27 1 3.6394 -0.8163 10.1806 28 1 3.7037 -2.6568 8.6029 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.9824 -0.4622 -0.4320 35 1 5.9960 0.4289 -2.9539 36 1 5.9213 0.3794 -1.1763 37 1 7.3709 -0.2120 -2.0225 38 1 5.4535 -0.9228 -4.9236 39 1 6.6113 -2.6582 -6.5101 40 1 7.6829 -4.5777 -4.9644 41 1 7.1640 -3.9630 -2.4700 42 1 2.2490 -1.6319 1.1525 43 1 1.9777 -1.5512 3.8324 44 1 3.6492 -1.1206 3.3978 45 1 3.4071 1.4686 8.6854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502026874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -47.824943 kcal Electronic energy + Delta-G solvation = -26300.808827 eV Core-core repulsion = 22444.578067 eV Total energy + Delta-G solvation = -3856.230760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34443 -41.03409 -40.32339 -37.50498 -35.44841 -34.70349 -34.56705 -32.65595 -30.38329 -29.98397 -29.59253 -27.65360 -27.61247 -25.23403 -22.94635 -22.06820 -21.62571 -21.34927 -20.60129 -19.86459 -18.89913 -18.01060 -17.94317 -17.43270 -16.86834 -16.68966 -16.49287 -16.33641 -15.90109 -15.51991 -15.04377 -14.74335 -14.61770 -14.50978 -14.42476 -14.07189 -14.02424 -13.72568 -13.42590 -13.28644 -13.22001 -13.14751 -13.07551 -12.98471 -12.95636 -12.88692 -12.62443 -12.58600 -12.08346 -11.71392 -11.13434 -11.12194 -10.94184 -10.28350 -10.24818 -10.19810 -9.52817 -9.00680 -8.64056 -8.33921 -6.10840 1.25723 1.28647 1.37298 1.42612 1.48107 1.57593 1.62231 1.79548 2.17071 2.19052 2.27282 2.31656 3.00595 3.33007 3.42669 3.53446 3.75119 3.79459 3.98334 4.02793 4.11764 4.23382 4.34948 4.39050 4.53267 4.53954 4.55381 4.59004 4.67088 4.72964 4.75440 4.80809 4.98306 5.05472 5.15964 5.31170 5.41689 5.43271 5.43916 5.46066 6.11375 6.20733 6.23993 6.33433 6.47482 6.51341 6.99768 7.08216 7.24303 8.74854 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002239 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.393053 B =12504.041714 C =14014.011576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.084 0.916 4 C 0.123 3.877 5 N -0.712 5.712 6 C 0.506 3.494 7 O -0.561 6.561 8 C 0.114 3.886 9 H 0.151 0.849 10 C -0.155 4.155 11 N -0.436 5.436 12 C -0.001 4.001 13 C -0.228 4.228 14 C -0.218 4.218 15 C -0.023 4.023 16 N -0.711 5.711 17 C 0.540 3.460 18 O -0.559 6.559 19 C -0.132 4.132 20 S -0.149 6.149 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.259 1.259 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.185 0.815 42 H 0.415 0.585 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -8.227 -22.397 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.291 3.709 7 O -0.439 6.439 8 C 0.008 3.992 9 H 0.168 0.832 10 C -0.213 4.213 11 N -0.113 5.113 12 C -0.131 4.131 13 C -0.252 4.252 14 C -0.243 4.243 15 C -0.151 4.151 16 N -0.366 5.366 17 C 0.326 3.674 18 O -0.436 6.436 19 C -0.283 4.283 20 S 0.079 5.921 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.193 1.193 27 H -0.206 1.206 28 H -0.183 1.183 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.202 0.798 42 H 0.252 0.748 43 H 0.124 0.876 44 H 0.132 0.868 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.518 -6.285 -22.577 23.698 hybrid contribution 0.681 -1.812 1.140 2.246 sum 4.199 -8.097 -21.437 23.297 Atomic orbital electron populations 1.22089 0.93580 1.03324 1.02844 1.21175 0.95425 0.97286 0.82750 0.89792 1.21653 0.79436 1.01864 0.97128 1.45871 1.07967 1.59103 1.23618 1.20920 0.90240 0.77480 0.82284 1.90782 1.70405 1.48360 1.34303 1.21492 0.90369 0.98020 0.89335 0.83152 1.22137 1.02861 0.91974 1.04337 1.43885 1.42310 1.19745 1.05337 1.21768 1.05660 1.02449 0.83201 1.21123 1.06677 0.97884 0.99534 1.21153 1.08118 1.02146 0.92873 1.22275 1.02852 0.89969 1.00051 1.45869 1.67872 1.14554 1.08307 1.19966 0.76557 0.86496 0.84365 1.90714 1.50262 1.17671 1.84952 1.23393 1.05714 1.03140 0.96061 1.85574 1.86723 1.17066 1.02784 1.23198 1.50653 0.98510 0.96892 0.89930 1.26078 0.95179 0.97112 1.00737 1.70170 1.46860 1.15437 1.22239 0.85003 0.78561 0.78270 0.76470 1.19265 1.20581 1.18299 0.89527 0.90863 0.93837 0.90037 0.89292 0.74913 0.91859 0.88371 0.89653 0.82727 0.84294 0.83681 0.79774 0.74843 0.87634 0.86770 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 71.98 0.68 -1.94 16 2 C 0.14 2.26 2.73 44.99 0.12 2.38 16 3 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 4 C 0.12 1.59 5.23 86.38 0.45 2.04 16 5 N -0.71 -8.71 5.28 -463.06 -2.45 -11.16 16 6 C 0.51 8.29 7.11 87.66 0.62 8.91 16 7 O -0.56 -14.07 15.44 -3.05 -0.05 -14.12 16 8 C 0.11 1.41 3.36 44.24 0.15 1.56 16 9 H 0.15 1.08 8.06 -2.38 -0.02 1.06 16 10 C -0.16 -1.46 9.14 71.98 0.66 -0.80 16 11 N -0.44 -7.77 2.40 -505.91 -1.22 -8.99 16 12 C 0.00 -0.02 9.56 83.21 0.80 0.78 16 13 C -0.23 -4.79 10.86 22.14 0.24 -4.55 16 14 C -0.22 -4.24 10.86 22.14 0.24 -4.00 16 15 C -0.02 -0.40 11.39 83.21 0.95 0.55 16 16 N -0.71 -13.32 4.52 -442.55 -2.00 -15.32 16 17 C 0.54 16.60 7.81 87.66 0.68 17.29 16 18 O -0.56 -22.56 15.52 -3.01 -0.05 -22.61 16 19 C -0.13 -4.58 6.16 71.24 0.44 -4.14 16 20 S -0.15 -7.72 20.57 -56.49 -1.16 -8.88 16 21 C -0.54 -29.61 9.50 67.95 0.65 -28.96 16 22 H 0.08 4.15 7.80 -2.91 -0.02 4.12 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -54.24 13.22 21.65 0.29 -53.95 16 25 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.41 4.04 7.56 -92.70 -0.70 3.34 16 35 H 0.06 0.71 7.92 -2.39 -0.02 0.69 16 36 H 0.10 0.63 7.56 -2.39 -0.02 0.62 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.41 5.44 8.60 -92.71 -0.80 4.64 16 43 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 45 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -80.48 397.29 2.05 -78.43 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.49 Total: 22.17 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 7.15 Total: -9.66 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -5.37 Total: -89.42 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.09 Total: -36.73 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.88 kcal Total: -80.48 2.05 -78.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502026874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.605 kcal (2) G-P(sol) polarization free energy of solvation -80.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds