Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47470 * 2 1 4 4 C 1.47199 * 109.47204 * 120.00725 * 2 1 3 5 5 N 2.60802 * 109.47112 * 120.00384 * 2 1 3 6 6 C 1.50706 * 109.46752 * 240.00368 * 2 1 3 7 7 O 1.21286 * 119.99756 * 240.00468 * 6 2 1 8 8 N 1.34771 * 120.00315 * 59.99907 * 6 2 1 9 9 C 1.46501 * 120.00313 * 179.97438 * 8 6 2 10 10 H 1.09004 * 110.77401 * 36.79036 * 9 8 6 11 11 C 1.54319 * 110.72019 * 273.55233 * 9 8 6 12 12 N 1.47026 * 107.26997 * 263.82579 * 11 9 8 13 13 C 1.34778 * 125.64787 * 181.02755 * 12 11 9 14 14 O 1.21278 * 119.99748 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.00209 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31634 * 119.99756 * 0.27728 * 19 17 16 21 21 Si 1.86803 * 120.00005 * 180.27923 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99999 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00046 * 21 19 17 25 25 C 1.47428 * 108.70004 * 1.28701 * 12 11 9 26 26 C 1.55126 * 104.72365 * 335.55466 * 25 12 11 27 27 C 1.52998 * 111.19071 * 279.18994 * 26 25 12 28 28 C 1.53005 * 110.93536 * 155.29075 * 26 25 12 29 29 H 1.09001 * 109.47040 * 59.99272 * 1 2 3 30 30 H 1.08997 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46582 * 300.00171 * 1 2 3 32 32 H 0.97005 * 120.00053 * 0.02562 * 8 6 2 33 33 H 1.09003 * 109.88022 * 144.41386 * 11 9 8 34 34 H 1.08999 * 109.88415 * 23.24350 * 11 9 8 35 35 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 36 36 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 37 37 H 0.97000 * 119.99219 * 179.97438 * 20 19 17 38 38 H 1.09006 * 110.36327 * 94.48645 * 25 12 11 39 39 H 1.09003 * 110.36649 * 216.80063 * 25 12 11 40 40 H 1.08999 * 109.46880 * 172.18991 * 27 26 25 41 41 H 1.09007 * 109.47198 * 292.18468 * 27 26 25 42 42 H 1.08995 * 109.47692 * 52.18804 * 27 26 25 43 43 H 1.08994 * 109.46807 * 307.95010 * 28 26 25 44 44 H 1.08990 * 109.47457 * 67.95611 * 28 26 25 45 45 H 1.09004 * 109.46782 * 187.95844 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6941 1.2018 5 7 2.3993 -1.2296 2.1294 6 6 2.0323 -0.7104 -1.2306 7 8 2.7295 -1.6966 -1.1194 8 7 1.7067 -0.2499 -2.4546 9 6 2.1954 -0.9401 -3.6509 10 1 2.2110 -2.0189 -3.4955 11 6 3.5956 -0.4248 -4.0448 12 7 3.4073 0.6044 -5.0777 13 6 4.3919 1.2851 -5.6971 14 8 4.1190 2.1161 -6.5372 15 6 5.8320 1.0138 -5.3456 16 16 6.9065 2.0783 -6.3397 17 6 8.4827 1.5666 -5.7409 18 1 8.5495 0.8029 -4.9801 19 6 9.6388 2.1404 -6.2516 20 7 9.5574 3.0707 -7.1793 21 14 11.3101 1.5922 -5.6225 22 1 11.1297 0.5420 -4.5883 23 1 12.1084 1.0461 -6.7492 24 1 12.0208 2.7534 -5.0293 25 6 1.9627 0.7729 -5.3192 26 6 1.3306 -0.5760 -4.8865 27 6 1.4727 -1.6310 -5.9854 28 6 -0.1366 -0.3913 -4.4940 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.1493 0.5390 -2.5436 33 1 4.1938 -1.2444 -4.4430 34 1 4.0893 0.0088 -3.1751 35 1 6.0653 -0.0311 -5.5502 36 1 5.9932 1.2217 -4.2878 37 1 10.3654 3.4719 -7.5359 38 1 1.5698 1.5901 -4.7142 39 1 1.7739 0.9581 -6.3767 40 1 1.1472 -2.5989 -5.6041 41 1 0.8562 -1.3512 -6.8397 42 1 2.5157 -1.6948 -6.2954 43 1 -0.2184 0.4115 -3.7614 44 1 -0.7201 -0.1368 -5.3786 45 1 -0.5165 -1.3173 -4.0622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509597713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -44.942425 kcal Electronic energy + Delta-G solvation = -27149.702547 eV Core-core repulsion = 23293.596783 eV Total energy + Delta-G solvation = -3856.105764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17965 -39.75023 -38.01256 -36.86474 -34.65819 -33.83044 -33.33249 -32.43384 -29.61912 -29.18518 -27.63489 -26.18149 -25.83486 -25.39191 -23.45032 -21.33601 -20.02002 -19.38999 -18.38883 -17.76466 -17.59076 -16.75914 -16.59329 -15.86056 -15.58385 -15.18737 -14.84383 -14.80120 -14.49295 -14.18775 -14.13678 -13.85705 -13.59420 -13.40351 -13.20213 -13.08704 -12.85561 -12.75688 -12.60478 -12.54033 -12.42201 -12.35084 -12.28964 -12.00414 -11.84081 -11.39446 -11.36489 -11.06980 -11.03450 -10.96771 -10.75182 -10.35699 -9.81960 -9.71444 -9.39403 -9.07828 -8.58348 -8.25025 -6.51584 -6.22605 -3.93229 2.00462 2.04305 2.41885 2.80135 2.87900 3.01073 3.21774 3.26316 3.31554 3.32997 3.58125 3.81668 4.10139 4.13773 4.19969 4.25000 4.39633 4.44692 4.69142 4.80309 4.89003 4.93463 5.02886 5.07760 5.12986 5.19907 5.23469 5.37221 5.39062 5.46656 5.49521 5.50446 5.56020 5.63873 5.71557 5.76297 5.85441 5.93760 6.00771 6.13013 6.32706 6.86488 7.17666 7.57314 7.60222 7.62637 8.35199 8.49735 9.23251 10.84877 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.002859 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.467733 B = 9789.696915 C =11549.080197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 H 0.143 0.857 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.525 3.475 7 O -0.521 6.521 8 N -0.713 5.713 9 C 0.143 3.857 10 H 0.112 0.888 11 C 0.093 3.907 12 N -0.624 5.624 13 C 0.550 3.450 14 O -0.514 6.514 15 C -0.148 4.148 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.115 3.885 26 C -0.084 4.084 27 C -0.135 4.135 28 C -0.135 4.135 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.404 0.596 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.286 -6.974 9.583 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 H 0.161 0.839 4 C -0.100 4.100 5 N -0.083 5.083 6 C 0.308 3.692 7 O -0.396 6.396 8 N -0.366 5.366 9 C 0.038 3.962 10 H 0.130 0.870 11 C -0.032 4.032 12 N -0.362 5.362 13 C 0.339 3.661 14 O -0.388 6.388 15 C -0.298 4.298 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.085 4.085 27 C -0.193 4.193 28 C -0.192 4.192 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.420 -7.094 9.659 27.202 hybrid contribution 1.179 -0.656 1.011 1.686 sum -23.241 -7.749 10.671 26.722 Atomic orbital electron populations 1.21810 0.89465 1.04375 1.04544 1.18842 0.98836 1.00415 0.85556 0.83943 1.28023 0.93956 0.94036 0.94013 1.81219 1.07386 1.07739 1.11991 1.19996 0.80427 0.84650 0.84097 1.90826 1.36629 1.25679 1.86431 1.45906 1.53776 1.32193 1.04706 1.22051 0.92423 0.98164 0.83570 0.86981 1.22443 0.97037 0.91878 0.91847 1.48465 1.05831 1.40687 1.41227 1.20015 0.86134 0.79817 0.80124 1.90713 1.83537 1.32704 1.31817 1.23516 0.94432 1.06149 1.05721 1.85362 0.97869 1.49260 1.50902 1.22901 0.91483 1.26818 1.27021 0.90879 1.24992 0.99214 0.94641 0.94712 1.70030 1.29268 1.24804 1.26203 0.86120 0.82106 0.78596 0.78719 1.19578 1.20541 1.20551 1.22325 0.80734 0.95345 1.02446 1.22096 0.95426 0.96308 0.94678 1.21717 1.03154 0.97266 0.97163 1.21710 0.93597 1.02103 1.01836 0.89868 0.90907 0.90092 0.75868 0.90161 0.90777 0.89294 0.89381 0.92238 0.91668 0.89850 0.91930 0.91526 0.91661 0.92413 0.91498 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.23 9.04 37.16 0.34 0.11 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.35 16 3 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 4 C 0.22 2.02 13.88 -20.76 -0.29 1.73 16 5 N -0.41 -5.17 18.54 42.15 0.78 -4.38 16 6 C 0.52 3.84 7.14 -10.98 -0.08 3.76 16 7 O -0.52 -6.39 15.76 5.55 0.09 -6.31 16 8 N -0.71 -3.76 4.46 -52.03 -0.23 -3.99 16 9 C 0.14 1.03 2.50 -66.10 -0.17 0.86 16 10 H 0.11 0.87 7.61 -51.93 -0.40 0.47 16 11 C 0.09 0.97 5.90 -3.06 -0.02 0.95 16 12 N -0.62 -8.02 3.31 -170.38 -0.56 -8.58 16 13 C 0.55 10.11 7.87 -10.99 -0.09 10.02 16 14 O -0.51 -11.37 16.12 5.56 0.09 -11.28 16 15 C -0.15 -3.00 5.35 36.00 0.19 -2.81 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.53 -15.26 9.50 30.94 0.29 -14.96 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 21 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.11 1.08 5.82 -2.41 -0.01 1.06 16 26 C -0.08 -0.52 0.83 -152.24 -0.13 -0.64 16 27 C -0.14 -0.90 8.58 37.16 0.32 -0.58 16 28 C -0.13 -0.47 8.22 37.16 0.31 -0.17 16 29 H 0.08 -0.06 7.56 -51.93 -0.39 -0.45 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.40 1.05 6.32 -40.82 -0.26 0.79 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 35 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 38 H 0.07 0.53 7.99 -51.93 -0.41 0.11 16 39 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.56 7.91 -51.93 -0.41 0.15 16 43 H 0.06 0.11 6.38 -51.93 -0.33 -0.22 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -39.09 393.39 -6.94 -46.02 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -6.81 Total: -5.69 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 0.28 Total: 0.99 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.72 Total: -42.36 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.09 -6.94 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509597713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.082 kcal (2) G-P(sol) polarization free energy of solvation -39.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds