Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47470 * 2 1 4 4 C 1.47199 * 109.47204 * 120.00725 * 2 1 3 5 5 N 2.60802 * 109.47112 * 120.00384 * 2 1 3 6 6 C 1.50706 * 109.46752 * 240.00368 * 2 1 3 7 7 O 1.21286 * 119.99756 * 240.00468 * 6 2 1 8 8 N 1.34771 * 120.00315 * 59.99907 * 6 2 1 9 9 C 1.46501 * 120.00313 * 179.97438 * 8 6 2 10 10 H 1.09004 * 110.77401 * 36.79036 * 9 8 6 11 11 C 1.54319 * 110.72019 * 273.55233 * 9 8 6 12 12 N 1.47026 * 107.26997 * 263.82579 * 11 9 8 13 13 C 1.34778 * 125.64787 * 181.02755 * 12 11 9 14 14 O 1.21278 * 119.99748 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.00209 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31634 * 119.99756 * 0.27728 * 19 17 16 21 21 Si 1.86803 * 120.00005 * 180.27923 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99999 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00046 * 21 19 17 25 25 C 1.47428 * 108.70004 * 1.28701 * 12 11 9 26 26 C 1.55126 * 104.72365 * 335.55466 * 25 12 11 27 27 C 1.52998 * 111.19071 * 279.18994 * 26 25 12 28 28 C 1.53005 * 110.93536 * 155.29075 * 26 25 12 29 29 H 1.09001 * 109.47040 * 59.99272 * 1 2 3 30 30 H 1.08997 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46582 * 300.00171 * 1 2 3 32 32 H 0.97005 * 120.00053 * 0.02562 * 8 6 2 33 33 H 1.09003 * 109.88022 * 144.41386 * 11 9 8 34 34 H 1.08999 * 109.88415 * 23.24350 * 11 9 8 35 35 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 36 36 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 37 37 H 0.97000 * 119.99219 * 179.97438 * 20 19 17 38 38 H 1.09006 * 110.36327 * 94.48645 * 25 12 11 39 39 H 1.09003 * 110.36649 * 216.80063 * 25 12 11 40 40 H 1.08999 * 109.46880 * 172.18991 * 27 26 25 41 41 H 1.09007 * 109.47198 * 292.18468 * 27 26 25 42 42 H 1.08995 * 109.47692 * 52.18804 * 27 26 25 43 43 H 1.08994 * 109.46807 * 307.95010 * 28 26 25 44 44 H 1.08990 * 109.47457 * 67.95611 * 28 26 25 45 45 H 1.09004 * 109.46782 * 187.95844 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6941 1.2018 5 7 2.3993 -1.2296 2.1294 6 6 2.0323 -0.7104 -1.2306 7 8 2.7295 -1.6966 -1.1194 8 7 1.7067 -0.2499 -2.4546 9 6 2.1954 -0.9401 -3.6509 10 1 2.2110 -2.0189 -3.4955 11 6 3.5956 -0.4248 -4.0448 12 7 3.4073 0.6044 -5.0777 13 6 4.3919 1.2851 -5.6971 14 8 4.1190 2.1161 -6.5372 15 6 5.8320 1.0138 -5.3456 16 16 6.9065 2.0783 -6.3397 17 6 8.4827 1.5666 -5.7409 18 1 8.5495 0.8029 -4.9801 19 6 9.6388 2.1404 -6.2516 20 7 9.5574 3.0707 -7.1793 21 14 11.3101 1.5922 -5.6225 22 1 11.1297 0.5420 -4.5883 23 1 12.1084 1.0461 -6.7492 24 1 12.0208 2.7534 -5.0293 25 6 1.9627 0.7729 -5.3192 26 6 1.3306 -0.5760 -4.8865 27 6 1.4727 -1.6310 -5.9854 28 6 -0.1366 -0.3913 -4.4940 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.1493 0.5390 -2.5436 33 1 4.1938 -1.2444 -4.4430 34 1 4.0893 0.0088 -3.1751 35 1 6.0653 -0.0311 -5.5502 36 1 5.9932 1.2217 -4.2878 37 1 10.3654 3.4719 -7.5359 38 1 1.5698 1.5901 -4.7142 39 1 1.7739 0.9581 -6.3767 40 1 1.1472 -2.5989 -5.6041 41 1 0.8562 -1.3512 -6.8397 42 1 2.5157 -1.6948 -6.2954 43 1 -0.2184 0.4115 -3.7614 44 1 -0.7201 -0.1368 -5.3786 45 1 -0.5165 -1.3173 -4.0622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509597713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -73.338393 kcal Electronic energy + Delta-G solvation = -27150.933889 eV Core-core repulsion = 23293.596783 eV Total energy + Delta-G solvation = -3857.337106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92476 -40.66967 -39.14771 -37.62583 -35.42276 -34.66373 -34.60358 -33.81378 -31.09835 -29.94815 -28.09693 -27.77874 -26.86923 -26.15672 -24.27835 -21.98631 -20.77381 -20.62758 -19.52334 -18.97364 -18.23096 -17.95165 -17.50919 -16.91130 -16.72387 -16.61313 -16.16635 -15.68292 -15.54314 -15.21714 -15.09823 -14.83283 -14.51092 -14.28681 -14.06715 -13.92557 -13.75699 -13.60450 -13.52416 -13.28298 -13.23344 -13.16543 -13.00695 -12.93744 -12.74589 -12.72107 -12.63296 -12.36672 -11.97333 -11.89575 -11.73116 -11.55223 -11.18177 -11.03976 -10.94826 -10.32088 -10.23769 -9.70517 -8.69687 -8.37676 -6.15596 1.22141 1.38799 1.39730 1.42972 1.46379 1.54773 1.55006 1.73935 2.05798 2.24109 2.25674 2.81532 2.96429 3.10487 3.31099 3.44565 3.66076 3.78132 3.86728 3.98154 4.06864 4.14751 4.21694 4.29619 4.34329 4.41464 4.59983 4.68434 4.75889 4.79829 4.88261 4.90272 4.92727 4.99947 5.08972 5.20033 5.27800 5.33337 5.34284 5.39319 5.42709 5.52252 6.17253 6.31851 6.37091 6.54840 7.03985 7.09545 7.13077 8.71779 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.002859 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.467733 B = 9789.696915 C =11549.080197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 H 0.182 0.818 4 C 0.241 3.759 5 N -0.480 5.480 6 C 0.527 3.473 7 O -0.575 6.575 8 N -0.694 5.694 9 C 0.154 3.846 10 H 0.113 0.887 11 C 0.084 3.916 12 N -0.610 5.610 13 C 0.550 3.450 14 O -0.560 6.560 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.548 4.548 18 H 0.078 0.922 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.997 3.003 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.106 3.894 26 C -0.065 4.065 27 C -0.138 4.138 28 C -0.133 4.133 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.422 0.578 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.272 0.728 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.455 -7.322 10.885 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.198 0.802 4 C -0.078 4.078 5 N -0.156 5.156 6 C 0.313 3.687 7 O -0.454 6.454 8 N -0.348 5.348 9 C 0.048 3.952 10 H 0.131 0.869 11 C -0.040 4.040 12 N -0.344 5.344 13 C 0.338 3.662 14 O -0.438 6.438 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.695 4.695 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.545 5.545 21 Si 0.819 3.181 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.016 4.016 26 C -0.067 4.067 27 C -0.196 4.196 28 C -0.190 4.190 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.666 -7.444 10.984 29.784 hybrid contribution 1.732 -0.595 0.597 1.926 sum -24.933 -8.038 11.581 28.643 Atomic orbital electron populations 1.21918 0.86543 1.04545 1.06872 1.19209 1.00895 1.00968 0.81949 0.80158 1.28956 0.92140 0.92611 0.94065 1.81228 1.09811 1.10008 1.14527 1.20427 0.79348 0.83861 0.85098 1.90823 1.39178 1.28221 1.87178 1.45721 1.53177 1.32372 1.03534 1.21872 0.90609 0.98188 0.84570 0.86941 1.22673 0.99537 0.90984 0.90761 1.48305 1.06581 1.39411 1.40148 1.19574 0.86201 0.80134 0.80278 1.90692 1.84013 1.35065 1.34070 1.23327 0.94755 1.04751 1.04696 1.85457 1.00013 1.52255 1.53698 1.23202 0.92056 1.27048 1.27234 0.90404 1.26085 1.03645 0.94456 0.94702 1.70176 1.30653 1.26101 1.27575 0.84936 0.76370 0.78464 0.78377 1.18458 1.19721 1.19694 1.22694 0.78382 0.98209 1.02302 1.22025 0.97078 0.93933 0.93635 1.21753 1.01680 0.98416 0.97720 1.21753 0.90746 1.03669 1.02858 0.86439 0.91867 0.88904 0.73749 0.90594 0.91305 0.88253 0.88211 0.91882 0.89264 0.91381 0.90329 0.90989 0.94228 0.90061 0.90971 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.17 9.04 71.98 0.65 0.82 16 2 C -0.01 -0.04 3.10 -13.34 -0.04 -0.08 16 3 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 4 C 0.24 4.15 13.88 89.44 1.24 5.39 16 5 N -0.48 -12.23 18.54 20.01 0.37 -11.85 16 6 C 0.53 6.27 7.14 87.66 0.63 6.89 16 7 O -0.58 -13.47 15.76 -3.05 -0.05 -13.52 16 8 N -0.69 -4.71 4.46 -436.92 -1.95 -6.66 16 9 C 0.15 1.80 2.50 46.18 0.12 1.92 16 10 H 0.11 1.48 7.61 -2.38 -0.02 1.46 16 11 C 0.08 1.65 5.90 86.73 0.51 2.16 16 12 N -0.61 -15.08 3.31 -811.34 -2.69 -17.76 16 13 C 0.55 20.42 7.87 87.66 0.69 21.11 16 14 O -0.56 -25.51 16.12 -3.02 -0.05 -25.55 16 15 C -0.12 -5.13 5.35 71.23 0.38 -4.75 16 16 S -0.14 -7.93 20.57 -56.49 -1.16 -9.09 16 17 C -0.55 -31.82 9.50 67.96 0.65 -31.18 16 18 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 19 C 0.02 0.93 5.49 84.86 0.47 1.40 16 20 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 21 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 C 0.11 1.76 5.82 86.93 0.51 2.27 16 26 C -0.07 -0.61 0.83 -50.71 -0.04 -0.66 16 27 C -0.14 -1.58 8.58 71.98 0.62 -0.96 16 28 C -0.13 -0.31 8.22 71.98 0.59 0.28 16 29 H 0.12 -0.90 7.56 -2.39 -0.02 -0.92 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.42 -0.07 6.32 -92.70 -0.59 -0.65 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 36 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.09 1.12 7.99 -2.38 -0.02 1.10 16 39 H 0.07 1.41 7.95 -2.39 -0.02 1.39 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.04 0.66 7.91 -2.39 -0.02 0.64 16 43 H 0.08 -0.17 6.38 -2.39 -0.02 -0.19 16 44 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.08 0.10 8.14 -2.38 -0.02 0.08 16 Total: -1.00 -91.90 393.39 4.17 -87.72 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 0.42 Total: 1.39 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.96 Total: 4.62 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.98 Total: -91.92 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.10 Total: -39.08 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -91.90 4.17 -87.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509597713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.385 kcal (2) G-P(sol) polarization free energy of solvation -91.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds