Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 N 1.46499 * 109.47232 * 175.00202 * 4 2 1 6 6 C 1.34775 * 120.00008 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99643 * 180.02562 * 6 5 4 9 9 H 1.08991 * 109.47531 * 59.99974 * 8 6 5 10 10 C 1.53006 * 109.47066 * 299.99599 * 8 6 5 11 11 N 1.46501 * 109.46821 * 179.97438 * 8 6 5 12 12 C 1.36343 * 125.63614 * 59.69472 * 11 8 6 13 13 C 1.34851 * 108.21921 * 179.82839 * 12 11 8 14 14 C 1.40891 * 107.41475 * 0.42513 * 13 12 11 15 15 C 1.34848 * 107.41903 * 359.73231 * 14 13 12 16 16 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 17 17 C 1.34777 * 120.00258 * 85.00009 * 16 2 1 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 2 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99688 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00457 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47357 * 89.99660 * 25 23 21 27 27 H 1.48495 * 109.47496 * 209.99879 * 25 23 21 28 28 H 1.48500 * 109.46916 * 330.00121 * 25 23 21 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 31 31 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 32 32 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 33 33 H 1.09001 * 109.46928 * 55.00843 * 4 2 1 34 34 H 0.97008 * 119.99625 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.47026 * 180.02562 * 10 8 6 36 36 H 1.08999 * 109.47135 * 300.00208 * 10 8 6 37 37 H 1.08999 * 109.46736 * 60.00712 * 10 8 6 38 38 H 1.07998 * 125.88974 * 359.95803 * 12 11 8 39 39 H 1.07999 * 126.29357 * 180.15634 * 13 12 11 40 40 H 1.08004 * 126.29081 * 179.73819 * 14 13 12 41 41 H 1.08000 * 125.88948 * 179.97438 * 15 14 13 42 42 H 0.96999 * 119.99694 * 264.99399 * 16 2 1 43 43 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 44 44 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 45 45 H 0.97002 * 120.00245 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1730 -1.4289 2.1908 7 8 3.5698 -1.8847 3.1391 8 6 5.6750 -1.5365 2.1307 9 1 6.1093 -0.5378 2.0854 10 6 6.0803 -2.3259 0.8842 11 7 6.1633 -2.2271 3.3268 12 6 5.8247 -3.4916 3.7079 13 6 6.4763 -3.7753 4.8539 14 6 7.2377 -2.6409 5.1980 15 6 7.0270 -1.7094 4.2460 16 7 2.0183 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3571 18 8 1.8582 1.1584 -2.4118 19 6 2.6500 -0.7286 -3.5874 20 16 2.7100 0.4342 -4.9733 21 6 3.3147 -0.6306 -6.2401 22 1 3.5255 -1.6666 -6.0197 23 6 3.5211 -0.1376 -7.5211 24 7 3.9724 -0.9333 -8.4677 25 14 3.1586 1.6548 -7.9018 26 1 4.3772 2.4685 -7.6605 27 1 2.7493 1.7861 -9.3232 28 1 2.0611 2.1350 -7.0243 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.7516 -0.1582 2.1369 33 1 1.6055 -1.7197 1.2951 34 1 3.9824 -0.4620 0.4319 35 1 7.1667 -2.4040 0.8410 36 1 5.6460 -3.3246 0.9295 37 1 5.7170 -1.8116 -0.0055 38 1 5.1523 -4.1528 3.1815 39 1 6.4210 -4.7004 5.4086 40 1 7.8734 -2.5366 6.0649 41 1 7.4662 -0.7232 4.2170 42 1 2.2491 -1.6317 -1.1525 43 1 3.6494 -1.1203 -3.3979 44 1 1.9778 -1.5509 -3.8325 45 1 4.1164 -0.5889 -9.3630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526501560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -47.428003 kcal Electronic energy + Delta-G solvation = -26407.346933 eV Core-core repulsion = 22551.133386 eV Total energy + Delta-G solvation = -3856.213547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34481 -41.05950 -40.34020 -37.52243 -35.44683 -34.72299 -34.64551 -32.68719 -30.39377 -30.02885 -29.59433 -27.83458 -27.62143 -25.23025 -22.98326 -22.07147 -21.65028 -21.35214 -20.60436 -19.91853 -18.90590 -18.06246 -17.93375 -17.43219 -17.07249 -16.86500 -16.44625 -16.26090 -15.82863 -15.47032 -15.13148 -14.95568 -14.73903 -14.53622 -14.45578 -14.10379 -14.01695 -13.77500 -13.42519 -13.34694 -13.32317 -13.21940 -13.06988 -13.01408 -12.99727 -12.96131 -12.62027 -12.58045 -12.07615 -11.85968 -11.16010 -11.12236 -10.99448 -10.50760 -10.28677 -10.21950 -9.52796 -9.00786 -8.97030 -8.50410 -6.20419 1.00904 1.26266 1.32060 1.37389 1.47576 1.56230 1.57766 1.79354 2.15425 2.18855 2.24879 2.28377 2.73064 2.88190 3.43137 3.52574 3.75055 3.79530 3.87842 4.02489 4.11980 4.21697 4.29476 4.38842 4.50496 4.54227 4.55055 4.60583 4.67283 4.72846 4.75599 4.80929 4.97578 5.07750 5.16313 5.31414 5.41457 5.43594 5.43853 5.71791 6.11148 6.13258 6.23998 6.33210 6.43653 6.51395 6.95181 7.00015 7.18840 8.61790 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.002268 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.004135 B =12341.035333 C =13624.060078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.086 0.914 4 C 0.122 3.878 5 N -0.712 5.712 6 C 0.506 3.494 7 O -0.561 6.561 8 C 0.114 3.886 9 H 0.150 0.850 10 C -0.156 4.156 11 N -0.437 5.437 12 C 0.000 4.000 13 C -0.229 4.229 14 C -0.218 4.218 15 C -0.023 4.023 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.556 6.556 19 C -0.113 4.113 20 S -0.174 6.174 21 C -0.527 4.527 22 H 0.063 0.937 23 C 0.044 3.956 24 N -0.918 5.918 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.263 1.263 28 H -0.236 1.236 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.414 0.586 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.186 0.814 42 H 0.415 0.585 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -1.838 24.849 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.104 0.896 4 C -0.002 4.002 5 N -0.366 5.366 6 C 0.291 3.709 7 O -0.438 6.438 8 C 0.008 3.992 9 H 0.167 0.833 10 C -0.214 4.214 11 N -0.113 5.113 12 C -0.130 4.130 13 C -0.253 4.253 14 C -0.243 4.243 15 C -0.152 4.152 16 N -0.365 5.365 17 C 0.327 3.673 18 O -0.433 6.433 19 C -0.264 4.264 20 S 0.052 5.948 21 C -0.675 4.675 22 H 0.081 0.919 23 C -0.161 4.161 24 N -0.556 5.556 25 Si 0.736 3.264 26 H -0.186 1.186 27 H -0.188 1.188 28 H -0.160 1.160 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.203 0.797 42 H 0.252 0.748 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.969 -0.072 24.961 24.980 hybrid contribution 0.539 -1.329 -0.940 1.714 sum 1.508 -1.401 24.021 24.109 Atomic orbital electron populations 1.22091 0.93501 1.03349 1.02916 1.21181 0.95450 0.97311 0.82600 0.89574 1.21662 0.79421 1.01934 0.97167 1.45865 1.07974 1.59151 1.23573 1.20910 0.90253 0.77614 0.82138 1.90781 1.70391 1.48422 1.34243 1.21497 0.91016 1.00611 0.86070 0.83281 1.22156 1.04021 1.00661 0.94560 1.43891 1.35679 1.12281 1.19455 1.21770 1.04144 0.87551 0.99531 1.21128 1.04226 1.00897 0.99076 1.21154 1.06329 0.94930 1.01868 1.22274 0.99643 1.01262 0.92026 1.45855 1.67700 1.14640 1.08299 1.19868 0.76665 0.86497 0.84263 1.90715 1.50293 1.17420 1.84912 1.23292 1.06381 1.02201 0.94552 1.84730 1.86957 1.18522 1.04575 1.22471 1.49833 0.98351 0.96800 0.91899 1.25573 0.93368 1.02152 0.95052 1.70020 1.44618 1.37719 1.03233 0.85871 0.81006 0.80121 0.79400 1.18633 1.18782 1.15972 0.90913 0.89596 0.93614 0.89423 0.89975 0.74877 0.89854 0.91744 0.88108 0.82694 0.84346 0.83677 0.79739 0.74762 0.86348 0.87198 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.14 2.01 2.73 44.99 0.12 2.14 16 3 H 0.09 1.53 7.58 -2.39 -0.02 1.51 16 4 C 0.12 1.43 5.23 86.38 0.45 1.88 16 5 N -0.71 -7.98 5.28 -463.08 -2.45 -10.42 16 6 C 0.51 7.97 7.11 87.66 0.62 8.60 16 7 O -0.56 -13.79 15.44 -3.01 -0.05 -13.83 16 8 C 0.11 1.37 3.36 44.25 0.15 1.52 16 9 H 0.15 1.02 8.06 -2.39 -0.02 1.00 16 10 C -0.16 -1.42 9.14 71.98 0.66 -0.76 16 11 N -0.44 -7.69 2.40 -505.90 -1.22 -8.91 16 12 C 0.00 0.00 9.56 83.21 0.80 0.79 16 13 C -0.23 -4.82 10.86 22.14 0.24 -4.58 16 14 C -0.22 -4.22 10.86 22.14 0.24 -3.98 16 15 C -0.02 -0.40 11.39 83.21 0.95 0.55 16 16 N -0.71 -11.80 4.52 -442.54 -2.00 -13.80 16 17 C 0.54 15.00 7.81 87.66 0.68 15.69 16 18 O -0.56 -20.21 15.53 -3.03 -0.05 -20.26 16 19 C -0.11 -3.66 6.16 71.24 0.44 -3.22 16 20 S -0.17 -8.13 18.55 -56.49 -1.05 -9.18 16 21 C -0.53 -29.13 10.04 67.96 0.68 -28.45 16 22 H 0.06 3.67 8.03 -2.91 -0.02 3.65 16 23 C 0.04 2.48 5.50 84.86 0.47 2.95 16 24 N -0.92 -54.37 13.97 21.65 0.30 -54.06 16 25 Si 0.91 43.36 27.74 68.60 1.90 45.26 16 26 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.24 -11.11 6.74 99.48 0.67 -10.44 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.41 3.51 7.56 -92.70 -0.70 2.81 16 35 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.06 0.71 7.92 -2.39 -0.02 0.69 16 37 H 0.10 0.57 7.56 -2.39 -0.02 0.55 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.42 4.74 8.60 -92.71 -0.80 3.94 16 43 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.11 3.33 8.14 -2.40 -0.02 3.31 16 45 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.44 394.60 2.06 -76.38 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.53 Total: 17.36 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 7.18 Total: -8.53 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -5.36 Total: -87.20 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.09 Total: -34.09 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.90 Total: 45.26 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.05 Total: -9.18 kcal Total: -78.44 2.06 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526501560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.952 kcal (2) G-P(sol) polarization free energy of solvation -78.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds