Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46825 * 2 1 4 4 C 1.52994 * 109.47380 * 239.99746 * 2 1 3 5 5 N 1.46500 * 109.47232 * 185.00156 * 4 2 1 6 6 C 1.34772 * 119.99731 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00727 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99738 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47449 * 179.97438 * 8 6 5 10 10 N 1.46494 * 109.47444 * 180.02562 * 9 8 6 11 11 C 1.36345 * 125.63345 * 90.00307 * 10 9 8 12 12 C 1.34850 * 108.21864 * 179.97438 * 11 10 9 13 13 C 1.40894 * 107.41649 * 0.02562 * 12 11 10 14 14 C 1.34846 * 107.41755 * 359.97438 * 13 12 11 15 15 N 1.46498 * 109.46904 * 119.99590 * 2 1 3 16 16 C 1.34779 * 120.00092 * 275.00189 * 15 2 1 17 17 O 1.21283 * 119.99786 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99940 * 179.97438 * 16 15 2 19 19 S 1.81000 * 109.47110 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00107 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99970 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00189 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99667 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00312 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46839 * 60.00055 * 24 22 20 26 26 H 1.48495 * 109.47288 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46985 * 300.00196 * 24 22 20 28 28 H 1.09006 * 109.47440 * 60.00262 * 1 2 3 29 29 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47646 * 300.00323 * 1 2 3 31 31 H 1.08998 * 109.47292 * 64.99534 * 4 2 1 32 32 H 1.09005 * 109.47293 * 305.00436 * 4 2 1 33 33 H 0.96996 * 119.99648 * 0.02562 * 5 4 2 34 34 H 1.09009 * 109.46880 * 59.99997 * 8 6 5 35 35 H 1.08993 * 109.47272 * 300.00141 * 8 6 5 36 36 H 1.09006 * 109.46659 * 59.99780 * 9 8 6 37 37 H 1.09005 * 109.47449 * 300.00857 * 9 8 6 38 38 H 1.08006 * 125.89009 * 359.71336 * 11 10 9 39 39 H 1.08004 * 126.29266 * 180.02562 * 12 11 10 40 40 H 1.07995 * 126.28821 * 179.97438 * 13 12 11 41 41 H 1.08002 * 125.89342 * 180.02562 * 14 13 12 42 42 H 0.97001 * 119.99848 * 94.99737 * 15 2 1 43 43 H 1.08997 * 109.47275 * 299.99827 * 18 16 15 44 44 H 1.09001 * 109.47065 * 59.99866 * 18 16 15 45 45 H 0.97002 * 119.99621 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1731 -1.4283 -2.1910 7 8 3.5701 -1.8834 -3.1398 8 6 5.6751 -1.5360 -2.1308 9 6 6.1852 -2.2573 -3.3799 10 7 7.6452 -2.3625 -3.3212 11 6 8.3457 -3.3917 -2.7652 12 6 9.6612 -3.1303 -2.9050 13 6 9.7771 -1.8942 -3.5712 14 6 8.5280 -1.4477 -3.8136 15 7 2.0183 -0.6905 1.1962 16 6 2.1469 -0.0181 2.3572 17 8 1.8580 1.1586 2.4116 18 6 2.6487 -0.7286 3.5878 19 16 2.7104 0.4347 4.9731 20 6 3.3134 -0.6304 6.2405 21 1 3.5218 -1.6671 6.0208 22 6 3.5204 -0.1373 7.5213 23 7 3.2658 1.1261 7.7892 24 14 4.1604 -1.2663 8.8649 25 1 5.4865 -1.8046 8.4690 26 1 4.2936 -0.5027 10.1314 27 1 3.2092 -2.3894 9.0623 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -0.1585 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 3.9823 -0.4628 -0.4314 34 1 5.9637 -2.0990 -1.2432 35 1 6.1094 -0.5374 -2.0848 36 1 5.8964 -1.6947 -4.2678 37 1 5.7508 -3.2561 -3.4256 38 1 7.9203 -4.2636 -2.2905 39 1 10.4762 -3.7538 -2.5682 40 1 10.6972 -1.3960 -3.8385 41 1 8.2712 -0.5246 -4.3120 42 1 2.2489 -1.6317 1.1527 43 1 1.9758 -1.5503 3.8327 44 1 3.6478 -1.1212 3.3987 45 1 3.4102 1.4707 8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526922671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -31.889966 kcal Electronic energy + Delta-G solvation = -25632.303833 eV Core-core repulsion = 21776.764066 eV Total energy + Delta-G solvation = -3855.539767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41882 -40.28366 -39.37188 -36.56296 -34.40442 -33.98579 -32.48310 -31.63973 -30.12654 -29.01979 -28.68252 -26.80338 -25.53997 -24.22816 -21.92639 -20.80363 -20.71679 -20.47418 -20.16833 -18.19133 -17.91817 -17.13726 -16.74370 -16.54526 -16.16862 -15.80882 -15.07036 -14.88489 -14.85409 -14.59596 -14.20624 -14.07086 -13.71146 -13.41539 -13.33983 -13.17509 -13.01749 -12.82711 -12.63896 -12.50723 -12.50280 -12.28326 -12.14335 -11.93312 -11.73302 -11.26534 -11.10301 -11.08040 -10.81572 -10.39004 -9.88663 -9.60909 -9.47006 -9.15095 -9.08913 -8.88980 -8.41151 -8.31881 -6.57101 -6.27089 -3.98522 1.98021 2.16413 2.43664 2.83422 2.85918 2.92031 3.01131 3.19701 3.23674 3.26358 3.59495 4.15142 4.18629 4.25845 4.29059 4.43598 4.79096 4.79782 4.87695 4.95166 4.97862 4.99393 5.05835 5.08330 5.24513 5.28702 5.35738 5.40438 5.42473 5.46348 5.56818 5.77913 5.83033 5.90327 6.04182 6.05628 6.07681 6.08731 6.46211 6.74659 6.97873 7.00946 7.10395 7.52367 7.54421 7.73086 8.29325 8.45737 9.18291 10.80207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.002277 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.512165 B =12295.128464 C =14892.274753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.726 5.726 6 C 0.520 3.480 7 O -0.543 6.543 8 C -0.160 4.160 9 C 0.123 3.877 10 N -0.450 5.450 11 C -0.016 4.016 12 C -0.202 4.202 13 C -0.202 4.202 14 C -0.017 4.017 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.160 0.840 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -7.476 -23.452 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.379 5.379 6 C 0.306 3.694 7 O -0.421 6.421 8 C -0.201 4.201 9 C 0.001 3.999 10 N -0.126 5.126 11 C -0.145 4.145 12 C -0.227 4.227 13 C -0.227 4.227 14 C -0.146 4.146 15 N -0.394 5.394 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.243 0.757 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.177 0.823 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.075 -5.641 -23.922 24.769 hybrid contribution 1.052 -2.331 1.295 2.866 sum 4.127 -7.972 -22.627 24.343 Atomic orbital electron populations 1.22119 0.94069 1.02587 1.03281 1.21141 0.95124 0.97887 0.83241 0.88644 1.21741 0.79672 1.01697 0.98058 1.46016 1.08018 1.59834 1.23995 1.20357 0.89433 0.77456 0.82176 1.90736 1.70420 1.47786 1.33141 1.22043 0.92725 1.04306 1.01010 1.21514 0.76869 1.03313 0.98235 1.44174 1.05690 1.17527 1.45174 1.21877 0.92071 0.94830 1.05772 1.20933 0.95366 0.99168 1.07221 1.20926 0.96487 0.98254 1.07022 1.21860 0.89191 0.96860 1.06729 1.46165 1.69673 1.14022 1.09524 1.20356 0.76772 0.87228 0.83690 1.90716 1.47964 1.15752 1.84260 1.23542 1.03636 1.04966 0.98379 1.85402 1.86368 1.12669 0.98767 1.22813 1.51223 0.98098 0.96418 0.90984 1.24994 0.95035 0.95552 0.97960 1.70004 1.45347 1.13204 1.21684 0.86221 0.79329 0.80006 0.79945 1.19902 1.20775 1.19934 0.91476 0.92170 0.90976 0.89854 0.90643 0.75734 0.87823 0.87895 0.88459 0.88433 0.82258 0.84807 0.84830 0.82307 0.76754 0.89194 0.89265 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.13 1.24 2.73 -67.94 -0.19 1.06 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.11 0.87 5.23 -4.04 -0.02 0.85 16 5 N -0.73 -5.44 5.39 -60.29 -0.32 -5.77 16 6 C 0.52 4.32 7.83 -10.98 -0.09 4.23 16 7 O -0.54 -6.25 15.98 5.56 0.09 -6.17 16 8 C -0.16 -0.99 6.02 -27.88 -0.17 -1.16 16 9 C 0.12 0.83 5.38 -4.05 -0.02 0.81 16 10 N -0.45 -3.66 2.75 -117.13 -0.32 -3.99 16 11 C -0.02 -0.14 11.43 -16.75 -0.19 -0.33 16 12 C -0.20 -1.86 10.86 -39.78 -0.43 -2.30 16 13 C -0.20 -1.85 10.86 -39.78 -0.43 -2.28 16 14 C -0.02 -0.14 11.43 -16.75 -0.19 -0.33 16 15 N -0.74 -8.08 4.52 -53.81 -0.24 -8.32 16 16 C 0.53 8.78 7.81 -10.98 -0.09 8.69 16 17 O -0.51 -10.56 15.53 5.55 0.09 -10.47 16 18 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 21 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 24 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 2.85 8.14 -40.82 -0.33 2.52 16 34 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.40 3.44 8.60 -40.82 -0.35 3.09 16 43 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 44 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -35.49 401.20 -9.17 -44.66 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.96 Total: 3.85 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.04 Total: -7.14 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.16 Total: -42.98 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.18 Total: -16.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.49 -9.17 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526922671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.773 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds