Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46825 * 2 1 4 4 C 1.52994 * 109.47380 * 239.99746 * 2 1 3 5 5 N 1.46500 * 109.47232 * 185.00156 * 4 2 1 6 6 C 1.34772 * 119.99731 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00727 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99738 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47449 * 179.97438 * 8 6 5 10 10 N 1.46494 * 109.47444 * 180.02562 * 9 8 6 11 11 C 1.36345 * 125.63345 * 90.00307 * 10 9 8 12 12 C 1.34850 * 108.21864 * 179.97438 * 11 10 9 13 13 C 1.40894 * 107.41649 * 0.02562 * 12 11 10 14 14 C 1.34846 * 107.41755 * 359.97438 * 13 12 11 15 15 N 1.46498 * 109.46904 * 119.99590 * 2 1 3 16 16 C 1.34779 * 120.00092 * 275.00189 * 15 2 1 17 17 O 1.21283 * 119.99786 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99940 * 179.97438 * 16 15 2 19 19 S 1.81000 * 109.47110 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00107 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99970 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00189 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99667 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00312 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46839 * 60.00055 * 24 22 20 26 26 H 1.48495 * 109.47288 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46985 * 300.00196 * 24 22 20 28 28 H 1.09006 * 109.47440 * 60.00262 * 1 2 3 29 29 H 1.09004 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47646 * 300.00323 * 1 2 3 31 31 H 1.08998 * 109.47292 * 64.99534 * 4 2 1 32 32 H 1.09005 * 109.47293 * 305.00436 * 4 2 1 33 33 H 0.96996 * 119.99648 * 0.02562 * 5 4 2 34 34 H 1.09009 * 109.46880 * 59.99997 * 8 6 5 35 35 H 1.08993 * 109.47272 * 300.00141 * 8 6 5 36 36 H 1.09006 * 109.46659 * 59.99780 * 9 8 6 37 37 H 1.09005 * 109.47449 * 300.00857 * 9 8 6 38 38 H 1.08006 * 125.89009 * 359.71336 * 11 10 9 39 39 H 1.08004 * 126.29266 * 180.02562 * 12 11 10 40 40 H 1.07995 * 126.28821 * 179.97438 * 13 12 11 41 41 H 1.08002 * 125.89342 * 180.02562 * 14 13 12 42 42 H 0.97001 * 119.99848 * 94.99737 * 15 2 1 43 43 H 1.08997 * 109.47275 * 299.99827 * 18 16 15 44 44 H 1.09001 * 109.47065 * 59.99866 * 18 16 15 45 45 H 0.97002 * 119.99621 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1731 -1.4283 -2.1910 7 8 3.5701 -1.8834 -3.1398 8 6 5.6751 -1.5360 -2.1308 9 6 6.1852 -2.2573 -3.3799 10 7 7.6452 -2.3625 -3.3212 11 6 8.3457 -3.3917 -2.7652 12 6 9.6612 -3.1303 -2.9050 13 6 9.7771 -1.8942 -3.5712 14 6 8.5280 -1.4477 -3.8136 15 7 2.0183 -0.6905 1.1962 16 6 2.1469 -0.0181 2.3572 17 8 1.8580 1.1586 2.4116 18 6 2.6487 -0.7286 3.5878 19 16 2.7104 0.4347 4.9731 20 6 3.3134 -0.6304 6.2405 21 1 3.5218 -1.6671 6.0208 22 6 3.5204 -0.1373 7.5213 23 7 3.2658 1.1261 7.7892 24 14 4.1604 -1.2663 8.8649 25 1 5.4865 -1.8046 8.4690 26 1 4.2936 -0.5027 10.1314 27 1 3.2092 -2.3894 9.0623 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -0.1585 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 3.9823 -0.4628 -0.4314 34 1 5.9637 -2.0990 -1.2432 35 1 6.1094 -0.5374 -2.0848 36 1 5.8964 -1.6947 -4.2678 37 1 5.7508 -3.2561 -3.4256 38 1 7.9203 -4.2636 -2.2905 39 1 10.4762 -3.7538 -2.5682 40 1 10.6972 -1.3960 -3.8385 41 1 8.2712 -0.5246 -4.3120 42 1 2.2489 -1.6317 1.1527 43 1 1.9758 -1.5503 3.8327 44 1 3.6478 -1.1212 3.3987 45 1 3.4102 1.4707 8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526922671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -55.895249 kcal Electronic energy + Delta-G solvation = -25633.344780 eV Core-core repulsion = 21776.764066 eV Total energy + Delta-G solvation = -3856.580714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02462 -41.12620 -40.44831 -37.52608 -34.99598 -34.85902 -34.57544 -32.71410 -30.77962 -29.98512 -29.63181 -27.65098 -27.47678 -24.83407 -22.86736 -21.64023 -21.44041 -21.34201 -20.75655 -19.87108 -18.71715 -18.06261 -17.87678 -17.24716 -16.95437 -16.87058 -16.68681 -16.37543 -15.95644 -15.57176 -15.14025 -14.80576 -14.75408 -14.56296 -14.26786 -14.10828 -13.99721 -13.79644 -13.54035 -13.28938 -13.16204 -13.11682 -13.09497 -12.94977 -12.88132 -12.86129 -12.60550 -12.25004 -12.06916 -11.73487 -11.12576 -11.10392 -10.95194 -10.26689 -10.22848 -10.17337 -9.52407 -9.04423 -8.65309 -8.34332 -6.11722 1.27260 1.36108 1.43806 1.47135 1.52156 1.56495 1.60988 1.83952 2.17177 2.20729 2.28460 2.38853 3.00000 3.32367 3.54849 3.64650 3.75257 3.86417 3.98200 4.04900 4.23979 4.26185 4.33667 4.38385 4.41304 4.44919 4.52735 4.57774 4.70625 4.73912 4.77154 4.81399 4.83955 4.99226 5.21153 5.35264 5.42201 5.42526 5.45616 5.46676 6.11009 6.19882 6.35007 6.37874 6.47246 6.51921 7.07433 7.09547 7.23537 8.74336 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.002277 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.512165 B =12295.128464 C =14892.274753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.080 0.920 4 C 0.122 3.878 5 N -0.722 5.722 6 C 0.524 3.476 7 O -0.575 6.575 8 C -0.150 4.150 9 C 0.125 3.875 10 N -0.450 5.450 11 C -0.024 4.024 12 C -0.225 4.225 13 C -0.225 4.225 14 C -0.024 4.024 15 N -0.710 5.710 16 C 0.539 3.461 17 O -0.560 6.560 18 C -0.132 4.132 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.179 0.821 42 H 0.415 0.585 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -9.559 -24.292 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.002 4.002 5 N -0.374 5.374 6 C 0.311 3.689 7 O -0.455 6.455 8 C -0.191 4.191 9 C 0.003 3.997 10 N -0.126 5.126 11 C -0.153 4.153 12 C -0.250 4.250 13 C -0.249 4.249 14 C -0.154 4.154 15 N -0.365 5.365 16 C 0.325 3.675 17 O -0.437 6.437 18 C -0.283 4.283 19 S 0.078 5.922 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.186 1.186 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.247 0.753 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.196 0.804 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.196 0.804 42 H 0.252 0.748 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.342 -7.762 -24.795 26.195 hybrid contribution 0.935 -1.705 1.406 2.400 sum 4.276 -9.468 -23.389 25.592 Atomic orbital electron populations 1.22088 0.93510 1.03381 1.02803 1.21198 0.95493 0.97214 0.82948 0.90177 1.21647 0.79797 1.01900 0.96878 1.46001 1.07972 1.59446 1.23988 1.20599 0.90073 0.76668 0.81544 1.90731 1.71177 1.49258 1.34343 1.21971 0.91127 1.04897 1.01089 1.21530 0.76088 1.03490 0.98569 1.44290 1.06141 1.17331 1.44831 1.22234 0.92070 0.95428 1.05602 1.21205 0.96167 0.99652 1.07930 1.21199 0.97325 0.98690 1.07687 1.22231 0.89116 0.97513 1.06501 1.45863 1.67816 1.14549 1.08310 1.19982 0.76560 0.86501 0.84436 1.90713 1.50316 1.17710 1.85002 1.23388 1.05628 1.03168 0.96091 1.85567 1.86723 1.17105 1.02823 1.23167 1.50848 0.98473 0.96916 0.89937 1.26098 0.95133 0.97137 1.00748 1.70173 1.46836 1.15424 1.22300 0.85042 0.79119 0.77790 0.76306 1.18608 1.20556 1.18769 0.89429 0.90716 0.94023 0.89213 0.89774 0.75269 0.86828 0.87015 0.88417 0.88364 0.80445 0.84203 0.84158 0.80429 0.74824 0.87504 0.86988 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.48 71.98 0.68 -1.97 16 2 C 0.14 2.31 2.73 44.99 0.12 2.44 16 3 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 4 C 0.12 1.55 5.23 86.38 0.45 2.00 16 5 N -0.72 -8.96 5.39 -463.06 -2.49 -11.46 16 6 C 0.52 7.47 7.83 87.66 0.69 8.15 16 7 O -0.58 -12.07 15.98 -3.03 -0.05 -12.11 16 8 C -0.15 -1.51 6.02 29.85 0.18 -1.33 16 9 C 0.13 1.46 5.38 86.38 0.46 1.93 16 10 N -0.45 -6.63 2.75 -524.48 -1.44 -8.07 16 11 C -0.02 -0.37 11.43 83.21 0.95 0.58 16 12 C -0.23 -4.00 10.86 22.14 0.24 -3.76 16 13 C -0.22 -3.96 10.86 22.14 0.24 -3.72 16 14 C -0.02 -0.37 11.43 83.21 0.95 0.58 16 15 N -0.71 -14.00 4.52 -442.55 -2.00 -16.00 16 16 C 0.54 17.24 7.81 87.66 0.68 17.92 16 17 O -0.56 -23.33 15.53 -3.04 -0.05 -23.38 16 18 C -0.13 -4.72 6.16 71.24 0.44 -4.28 16 19 S -0.15 -7.91 20.57 -56.49 -1.16 -9.07 16 20 C -0.55 -30.17 9.50 67.95 0.65 -29.53 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -54.90 13.22 21.65 0.29 -54.62 16 24 Si 1.00 42.57 29.55 68.60 2.03 44.59 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.41 4.69 8.14 -92.71 -0.75 3.93 16 34 H 0.11 0.96 8.14 -2.38 -0.02 0.95 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.15 8.10 -2.38 -0.02 1.13 16 37 H 0.10 1.15 8.10 -2.38 -0.02 1.13 16 38 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.41 5.77 8.60 -92.71 -0.80 4.98 16 43 H 0.11 3.49 8.14 -2.40 -0.02 3.47 16 44 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.07 401.20 1.78 -77.29 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.55 Total: 22.60 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 7.21 Total: -9.77 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -5.65 Total: -90.15 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.10 Total: -35.49 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -79.07 1.78 -77.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526922671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.393 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds