Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47295 * 2 1 4 4 C 1.47202 * 109.46952 * 120.00625 * 2 1 3 5 5 N 2.60804 * 109.47085 * 120.00645 * 2 1 3 6 6 C 1.50702 * 109.46613 * 240.00254 * 2 1 3 7 7 O 1.21287 * 119.99910 * 239.99341 * 6 2 1 8 8 N 1.34779 * 120.00175 * 60.00501 * 6 2 1 9 9 C 1.46500 * 119.99868 * 359.97438 * 8 6 2 10 10 C 1.46501 * 119.99785 * 179.97438 * 8 6 2 11 11 H 1.08993 * 109.50180 * 359.93313 * 10 8 6 12 12 C 1.53037 * 109.49514 * 120.00290 * 10 8 6 13 13 C 1.53038 * 109.53983 * 181.34769 * 12 10 8 14 14 C 1.53197 * 109.30963 * 298.63302 * 13 12 10 15 15 N 1.46926 * 108.77484 * 54.63204 * 14 13 12 16 16 C 1.34777 * 120.62694 * 126.37299 * 15 14 13 17 17 O 1.21278 * 119.99854 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 359.97438 * 16 15 14 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99664 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47405 * 90.00153 * 24 22 20 26 26 H 1.48505 * 109.47032 * 209.99913 * 24 22 20 27 27 H 1.48497 * 109.47409 * 329.99921 * 24 22 20 28 28 C 1.46922 * 118.74006 * 306.64082 * 15 14 13 29 29 H 1.09005 * 109.46584 * 299.99720 * 1 2 3 30 30 H 1.08996 * 109.46734 * 59.99322 * 1 2 3 31 31 H 1.08994 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47097 * 270.00680 * 9 8 6 33 33 H 1.09005 * 109.46761 * 30.00330 * 9 8 6 34 34 H 1.08994 * 109.47056 * 149.99978 * 9 8 6 35 35 H 1.09001 * 109.46501 * 61.32336 * 12 10 8 36 36 H 1.09004 * 109.44815 * 301.35996 * 12 10 8 37 37 H 1.09000 * 109.50307 * 178.68276 * 13 12 10 38 38 H 1.08997 * 109.52523 * 58.59520 * 13 12 10 39 39 H 1.09001 * 109.58130 * 294.84241 * 14 13 12 40 40 H 1.09003 * 109.58526 * 174.42457 * 14 13 12 41 41 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 42 42 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 43 43 H 0.97005 * 119.99806 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58475 * 173.14651 * 28 15 14 45 45 H 1.08996 * 109.58975 * 293.57557 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6941 1.2018 5 7 2.3994 -1.2297 2.1293 6 6 2.0323 -0.7104 -1.2305 7 8 2.7296 -1.6965 -1.1193 8 7 1.7067 -0.2498 -2.4546 9 6 0.8641 0.9411 -2.5890 10 6 2.1954 -0.9401 -3.6508 11 1 2.8022 -1.7958 -3.3548 12 6 1.0058 -1.4215 -4.4846 13 6 1.5150 -2.1721 -5.7172 14 6 2.3554 -1.2227 -6.5771 15 7 3.4166 -0.6431 -5.7424 16 6 4.7077 -0.7214 -6.1209 17 8 5.5745 -0.2394 -5.4229 18 6 5.0745 -1.4090 -7.4108 19 16 6.8694 -1.3500 -7.6368 20 6 7.0123 -2.1991 -9.1741 21 1 6.1276 -2.5694 -9.6707 22 6 8.2617 -2.3910 -9.7473 23 7 9.3397 -1.9384 -9.1428 24 14 8.4130 -3.2906 -11.3774 25 1 8.3268 -2.3132 -12.4921 26 1 9.7199 -3.9935 -11.4354 27 1 7.3129 -4.2803 -11.5007 28 6 3.0440 0.0183 -4.4845 29 1 -0.3633 0.5138 0.8901 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.1838 0.6429 -2.6223 33 1 1.0274 1.5997 -1.7359 34 1 1.1219 1.4667 -3.5083 35 1 0.4131 -0.5632 -4.8011 36 1 0.3873 -2.0880 -3.8834 37 1 0.6672 -2.5348 -6.2984 38 1 2.1281 -3.0164 -5.4022 39 1 1.7219 -0.4264 -6.9680 40 1 2.8016 -1.7763 -7.4033 41 1 4.5862 -0.9032 -8.2437 42 1 4.7472 -2.4481 -7.3744 43 1 10.2129 -2.0729 -9.5432 44 1 3.9445 0.2833 -3.9303 45 1 2.4679 0.9178 -4.7012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527322346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -61.890665 kcal Electronic energy + Delta-G solvation = -27021.435460 eV Core-core repulsion = 23164.594764 eV Total energy + Delta-G solvation = -3856.840695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81140 -40.87046 -38.69045 -37.66716 -36.59109 -34.60907 -34.57882 -33.24241 -31.91644 -30.09083 -28.02589 -27.69458 -26.22673 -26.04032 -24.24994 -22.47465 -20.89203 -20.28702 -19.50965 -18.69912 -18.28611 -18.20271 -17.20972 -16.98703 -16.88074 -16.60131 -16.23777 -15.81896 -15.48515 -15.29617 -15.16762 -14.85264 -14.48957 -14.37888 -14.29119 -14.21939 -13.91359 -13.83612 -13.60905 -13.46463 -13.22107 -13.18590 -13.16014 -12.89066 -12.61805 -12.51058 -12.41950 -12.29204 -11.98968 -11.93493 -11.71666 -11.63565 -11.14494 -11.00215 -10.84389 -10.26389 -10.02406 -9.47035 -8.68678 -8.34874 -6.13753 1.18469 1.31702 1.39866 1.42665 1.47037 1.55689 1.56751 1.67969 1.94722 2.25465 2.28966 2.75814 2.99363 3.24401 3.40381 3.60890 3.75589 3.89273 3.93829 3.97379 4.04138 4.10710 4.19063 4.25579 4.40315 4.43784 4.55746 4.57660 4.73219 4.76054 4.81453 4.86195 4.89099 4.93914 5.07317 5.11178 5.19479 5.29750 5.35381 5.41265 5.41277 5.60496 6.18223 6.19613 6.26863 6.46801 6.98986 7.06142 7.11853 8.74450 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.002264 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.725963 B =12362.738574 C =13020.057188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.002 4.002 3 H 0.186 0.814 4 C 0.239 3.761 5 N -0.479 5.479 6 C 0.516 3.484 7 O -0.592 6.592 8 N -0.593 5.593 9 C 0.046 3.954 10 C 0.129 3.871 11 H 0.058 0.942 12 C -0.113 4.113 13 C -0.131 4.131 14 C 0.096 3.904 15 N -0.605 5.605 16 C 0.531 3.469 17 O -0.569 6.569 18 C -0.121 4.121 19 S -0.159 6.159 20 C -0.543 4.543 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.257 1.257 28 C 0.108 3.892 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.571 9.247 9.378 34.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 H 0.203 0.797 4 C -0.079 4.079 5 N -0.155 5.155 6 C 0.303 3.697 7 O -0.472 6.472 8 N -0.324 5.324 9 C -0.094 4.094 10 C 0.024 3.976 11 H 0.076 0.924 12 C -0.151 4.151 13 C -0.170 4.170 14 C -0.025 4.025 15 N -0.339 5.339 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.272 4.272 19 S 0.068 5.932 20 C -0.690 4.690 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.015 4.015 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.132 0.868 38 H 0.064 0.936 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -29.214 8.680 11.864 32.704 hybrid contribution 0.246 -1.253 -1.652 2.088 sum -28.968 7.427 10.212 31.600 Atomic orbital electron populations 1.22180 0.86350 1.04530 1.07650 1.19207 1.01105 1.00828 0.81425 0.79709 1.29005 0.92149 0.92681 0.94059 1.81211 1.09784 1.09785 1.14757 1.20730 0.79411 0.84026 0.85525 1.90813 1.40179 1.29200 1.86981 1.47734 1.50859 1.30320 1.03532 1.22661 0.95437 0.85421 1.05892 1.21191 0.96526 0.94837 0.85007 0.92394 1.21816 0.95864 1.01917 0.95509 1.21929 1.00560 0.97575 0.96895 1.22179 0.88828 0.98169 0.93317 1.48029 1.05393 1.57735 1.22772 1.20202 0.82624 0.78786 0.86519 1.90685 1.49557 1.48743 1.55760 1.23353 1.01500 1.04005 0.98306 1.85672 1.01422 1.76046 1.30072 1.23183 0.96536 1.42316 1.07012 0.89683 1.26169 0.94227 0.96351 1.02606 1.70197 0.99010 1.45120 1.40602 0.84930 0.78065 0.78243 0.76596 1.19060 1.20535 1.18048 1.21798 0.99344 0.96073 0.84318 0.88265 0.85592 0.92556 0.88255 0.87380 0.89270 0.87474 0.90658 0.86783 0.93648 0.87447 0.89505 0.86793 0.87706 0.92041 0.92499 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.07 8.78 71.98 0.63 0.56 16 2 C 0.00 -0.02 2.30 -13.34 -0.03 -0.05 16 3 H 0.19 -0.06 7.40 -2.39 -0.02 -0.08 16 4 C 0.24 4.79 13.88 89.44 1.24 6.03 16 5 N -0.48 -13.43 18.54 20.01 0.37 -13.06 16 6 C 0.52 9.03 7.06 87.66 0.62 9.64 16 7 O -0.59 -18.71 15.36 -3.05 -0.05 -18.75 16 8 N -0.59 -6.63 2.76 -822.95 -2.28 -8.91 16 9 C 0.05 -0.05 7.89 127.77 1.01 0.95 16 10 C 0.13 2.24 2.66 44.93 0.12 2.36 16 11 H 0.06 1.63 6.90 -2.39 -0.02 1.61 16 12 C -0.11 -1.08 5.15 30.62 0.16 -0.93 16 13 C -0.13 -1.59 6.08 30.67 0.19 -1.40 16 14 C 0.10 1.49 6.34 86.36 0.55 2.04 16 15 N -0.60 -15.28 2.98 -819.72 -2.44 -17.72 16 16 C 0.53 20.21 7.72 87.66 0.68 20.89 16 17 O -0.57 -27.50 15.28 -3.02 -0.05 -27.55 16 18 C -0.12 -4.82 4.50 71.24 0.32 -4.50 16 19 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 20 C -0.54 -31.06 9.50 67.95 0.65 -30.42 16 21 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 22 C 0.01 0.63 5.49 84.86 0.47 1.10 16 23 N -0.91 -56.77 13.22 21.65 0.29 -56.48 16 24 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 28 C 0.11 2.23 5.77 86.22 0.50 2.73 16 29 H 0.10 -0.24 8.14 -2.38 -0.02 -0.25 16 30 H 0.13 -0.78 4.53 -2.39 -0.01 -0.79 16 31 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.10 -0.64 6.95 -2.39 -0.02 -0.65 16 33 H 0.11 -0.69 6.01 -2.38 -0.01 -0.70 16 34 H 0.09 -0.17 6.34 -2.39 -0.02 -0.19 16 35 H 0.11 0.31 7.72 -2.39 -0.02 0.29 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.49 5.93 -2.39 -0.01 1.48 16 41 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 42 H 0.10 3.85 7.69 -2.39 -0.02 3.83 16 43 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.06 1.67 7.01 -2.39 -0.02 1.65 16 45 H 0.11 1.36 6.47 -2.39 -0.02 1.35 16 Total: -1.00 -99.95 378.56 4.82 -95.13 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.02 Total: 2.83 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.09 Total: 9.01 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -4.06 Total: -96.17 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.09 Total: -46.30 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -99.95 4.82 -95.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527322346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.242 kcal (2) G-P(sol) polarization free energy of solvation -99.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds