Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46977 * 2 1 4 4 C 1.47203 * 109.46773 * 119.99773 * 2 1 3 5 5 N 2.60796 * 109.46869 * 119.99659 * 2 1 3 6 6 C 1.50698 * 109.47120 * 239.99818 * 2 1 3 7 7 O 1.21280 * 119.99659 * 274.86464 * 6 2 1 8 8 N 1.34779 * 120.00205 * 94.86503 * 6 2 1 9 9 C 1.47021 * 125.64217 * 4.76948 * 8 6 2 10 10 C 1.54321 * 107.27226 * 180.96693 * 9 8 6 11 11 C 1.55160 * 102.86219 * 22.52993 * 10 9 8 12 12 H 1.08998 * 111.03865 * 82.39116 * 11 10 9 13 13 C 1.52995 * 111.00554 * 206.22537 * 11 10 9 14 14 N 1.46498 * 109.47338 * 287.19692 * 13 11 10 15 15 C 1.46497 * 119.99849 * 89.99738 * 14 13 11 16 16 C 1.34773 * 119.99746 * 269.99739 * 14 13 11 17 17 O 1.21279 * 120.00340 * 359.97438 * 16 14 13 18 18 C 1.50704 * 119.99747 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47003 * 179.97438 * 18 16 14 20 20 C 1.76204 * 99.99856 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99575 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99419 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00294 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47117 * 89.99606 * 24 22 20 26 26 H 1.48504 * 109.46876 * 209.99759 * 24 22 20 27 27 H 1.48495 * 109.47094 * 329.99554 * 24 22 20 28 28 C 1.47417 * 125.64916 * 185.08148 * 8 6 2 29 29 H 1.08996 * 109.46949 * 175.03261 * 1 2 3 30 30 H 1.09002 * 109.46933 * 55.03844 * 1 2 3 31 31 H 1.09003 * 109.46815 * 295.03773 * 1 2 3 32 32 H 1.08993 * 109.88706 * 300.51158 * 9 8 6 33 33 H 1.09000 * 109.88468 * 61.68190 * 9 8 6 34 34 H 1.08992 * 110.92936 * 264.11497 * 10 9 8 35 35 H 1.09005 * 110.74215 * 140.85256 * 10 9 8 36 36 H 1.09008 * 109.46546 * 47.19684 * 13 11 10 37 37 H 1.09000 * 109.47414 * 167.18958 * 13 11 10 38 38 H 1.09004 * 109.47368 * 90.00120 * 15 14 13 39 39 H 1.09002 * 109.46912 * 210.00211 * 15 14 13 40 40 H 1.08999 * 109.47693 * 329.99843 * 15 14 13 41 41 H 1.08998 * 109.47045 * 300.00189 * 18 16 14 42 42 H 1.09004 * 109.46952 * 60.00576 * 18 16 14 43 43 H 0.96999 * 119.99592 * 180.02562 * 23 22 20 44 44 H 1.09007 * 110.36451 * 274.67076 * 28 8 6 45 45 H 1.08995 * 110.36803 * 36.99461 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0324 -0.7104 -1.2304 7 8 2.1505 -1.9175 -1.2279 8 7 2.3504 -0.0045 -2.3336 9 6 2.3497 1.4617 -2.4423 10 6 2.7539 1.8141 -3.8893 11 6 2.4015 0.5210 -4.6710 12 1 1.3421 0.4945 -4.9262 13 6 3.2680 0.3846 -5.9245 14 7 2.8312 1.3579 -6.9285 15 6 3.4276 2.6957 -6.9598 16 6 1.8808 1.0227 -7.8233 17 8 1.3874 -0.0850 -7.7977 18 6 1.4310 2.0241 -8.8557 19 16 0.1559 1.2799 -9.9028 20 6 -0.1761 2.6292 -10.9863 21 1 0.3604 3.5593 -10.8705 22 6 -1.1265 2.4963 -11.9891 23 7 -1.3749 3.5045 -12.7982 24 14 -2.0539 0.8873 -12.1897 25 1 -3.2892 0.9219 -11.3661 26 1 -2.4160 0.6993 -13.6176 27 1 -1.1938 -0.2386 -11.7448 28 6 2.7501 -0.5747 -3.6329 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3633 0.5889 -0.8422 31 1 -0.3633 0.4349 0.9311 32 1 1.3534 1.8488 -2.2290 33 1 3.0716 1.8855 -1.7442 34 1 3.8211 2.0256 -3.9549 35 1 2.1714 2.6585 -4.2581 36 1 4.3108 0.5709 -5.6673 37 1 3.1678 -0.6232 -6.3277 38 1 4.3012 2.6889 -7.6116 39 1 2.6970 3.4103 -7.3388 40 1 3.7282 2.9832 -5.9523 41 1 1.0240 2.9032 -8.3560 42 1 2.2810 2.3174 -9.4719 43 1 -2.0393 3.4117 -13.4988 44 1 3.8205 -0.7806 -3.6437 45 1 2.1859 -1.4845 -3.8377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530190957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -39.229164 kcal Electronic energy + Delta-G solvation = -26401.967505 eV Core-core repulsion = 22546.109487 eV Total energy + Delta-G solvation = -3855.858019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89341 -39.74898 -38.22602 -36.91907 -35.55315 -33.95377 -32.48070 -32.42489 -30.33601 -29.32089 -27.35985 -26.21086 -25.66929 -24.99732 -23.56122 -21.25990 -20.46735 -19.34392 -18.03031 -17.95392 -17.67462 -16.96609 -16.65921 -16.02608 -15.78583 -15.53342 -15.05350 -14.91538 -14.49079 -14.14038 -13.97686 -13.77697 -13.71658 -13.53400 -13.28262 -13.12254 -13.03299 -12.89049 -12.82583 -12.73574 -12.51347 -12.39037 -12.29778 -12.16930 -12.04879 -11.63867 -11.29735 -11.26955 -11.04152 -11.01397 -10.63443 -10.35920 -9.89389 -9.56175 -9.18301 -9.04024 -8.72529 -8.53535 -6.96469 -6.32736 -4.04852 1.87588 2.00194 2.30469 2.59962 2.68228 2.85790 3.13460 3.30139 3.34009 3.47658 3.54704 3.80741 4.04828 4.23381 4.29452 4.29686 4.34148 4.40010 4.56177 4.71034 4.86201 4.88874 4.96616 4.98917 5.03776 5.06444 5.08906 5.16046 5.20244 5.34074 5.36883 5.38662 5.47885 5.50204 5.56009 5.68647 5.72551 5.73719 5.90094 5.94791 6.45867 6.87713 7.06617 7.32722 7.54156 7.90216 8.35087 8.37329 9.13535 10.76384 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.002083 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.026064 B =13436.480944 C =13974.800643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 H 0.132 0.868 4 C 0.218 3.782 5 N -0.410 5.410 6 C 0.539 3.461 7 O -0.524 6.524 8 N -0.613 5.613 9 C 0.093 3.907 10 C -0.127 4.127 11 C -0.117 4.117 12 H 0.095 0.905 13 C 0.129 3.871 14 N -0.621 5.621 15 C 0.076 3.924 16 C 0.531 3.469 17 O -0.515 6.515 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.114 3.886 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.017 1.548 22.708 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.150 0.850 4 C -0.101 4.101 5 N -0.085 5.085 6 C 0.324 3.676 7 O -0.399 6.399 8 N -0.347 5.347 9 C -0.029 4.029 10 C -0.165 4.165 11 C -0.138 4.138 12 H 0.113 0.887 13 C 0.005 3.995 14 N -0.357 5.357 15 C -0.067 4.067 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.008 4.008 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.816 -1.520 24.057 26.027 hybrid contribution -0.023 1.287 -0.724 1.477 sum 9.793 -0.233 23.333 25.306 Atomic orbital electron populations 1.21754 0.88860 1.04801 1.04492 1.18812 0.99357 0.99620 0.85357 0.85005 1.28150 0.93954 0.93914 0.94074 1.81220 1.07838 1.07762 1.11725 1.19601 0.77820 0.87107 0.83051 1.90803 1.52674 1.13824 1.82598 1.48399 1.67279 1.07671 1.11381 1.22217 1.02092 0.79912 0.98696 1.22781 1.02379 0.98520 0.92820 1.22852 1.02459 0.94081 0.94381 0.88672 1.21252 0.96755 0.94598 0.86846 1.47784 1.40841 1.14458 1.32614 1.21870 0.99022 0.83493 1.02328 1.20344 0.78288 0.88482 0.81018 1.90706 1.54279 1.22208 1.71710 1.23311 1.03828 1.00900 0.99115 1.84823 1.47273 1.22954 1.36680 1.22296 1.27486 0.99543 1.17570 0.89404 1.24713 0.95558 0.96887 0.94137 1.69938 1.32903 1.30787 1.17984 0.86739 0.81851 0.84873 0.78419 1.19209 1.19939 1.15922 1.22245 1.00630 0.97356 0.80610 0.90610 0.89696 0.90068 0.90560 0.90799 0.90147 0.89370 0.90287 0.89252 0.92533 0.90500 0.91127 0.88562 0.88532 0.91924 0.90819 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.13 37.16 0.34 -0.21 16 2 C -0.01 -0.04 2.81 -94.56 -0.27 -0.30 16 3 H 0.13 0.22 6.99 -51.93 -0.36 -0.14 16 4 C 0.22 1.98 14.14 -20.76 -0.29 1.68 16 5 N -0.41 -4.93 18.54 42.15 0.78 -4.15 16 6 C 0.54 4.69 6.82 -10.99 -0.07 4.62 16 7 O -0.52 -7.04 16.73 5.56 0.09 -6.95 16 8 N -0.61 -4.24 3.33 -170.53 -0.57 -4.81 16 9 C 0.09 0.34 5.95 -3.07 -0.02 0.32 16 10 C -0.13 -0.54 5.03 -24.90 -0.13 -0.67 16 11 C -0.12 -0.86 3.25 -88.47 -0.29 -1.15 16 12 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 13 C 0.13 1.10 4.91 -4.04 -0.02 1.08 16 14 N -0.62 -6.66 2.84 -181.57 -0.52 -7.18 16 15 C 0.08 0.56 10.05 59.85 0.60 1.16 16 16 C 0.53 8.53 7.69 -10.99 -0.08 8.44 16 17 O -0.51 -10.22 15.44 5.56 0.09 -10.13 16 18 C -0.12 -2.17 4.71 36.01 0.17 -2.00 16 19 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 20 C -0.52 -14.53 10.04 30.94 0.31 -14.22 16 21 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 22 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 23 N -0.88 -25.92 13.97 55.49 0.78 -25.15 16 24 Si 0.86 21.30 27.74 -169.99 -4.71 16.59 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 28 C 0.11 0.88 6.36 -2.53 -0.02 0.87 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.14 7.99 -51.93 -0.42 -0.28 16 34 H 0.08 0.25 7.58 -51.93 -0.39 -0.14 16 35 H 0.09 0.37 8.07 -51.93 -0.42 -0.05 16 36 H 0.08 0.46 7.90 -51.92 -0.41 0.05 16 37 H 0.09 0.95 7.42 -51.93 -0.39 0.57 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.60 6.44 -51.93 -0.33 0.27 16 40 H 0.07 0.32 6.41 -51.93 -0.33 -0.02 16 41 H 0.10 1.58 7.40 -51.92 -0.38 1.19 16 42 H 0.10 1.63 8.11 -51.91 -0.42 1.21 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 0.51 8.04 -51.92 -0.42 0.09 16 45 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -37.90 390.12 -6.85 -44.74 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -6.81 Total: -5.61 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 0.14 Total: 2.26 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.47 Total: -41.28 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.18 Total: -17.08 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.90 -6.85 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530190957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.516 kcal (2) G-P(sol) polarization free energy of solvation -37.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds