Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46977 * 2 1 4 4 C 1.47203 * 109.46773 * 119.99773 * 2 1 3 5 5 N 2.60796 * 109.46869 * 119.99659 * 2 1 3 6 6 C 1.50698 * 109.47120 * 239.99818 * 2 1 3 7 7 O 1.21280 * 119.99659 * 274.86464 * 6 2 1 8 8 N 1.34779 * 120.00205 * 94.86503 * 6 2 1 9 9 C 1.47021 * 125.64217 * 4.76948 * 8 6 2 10 10 C 1.54321 * 107.27226 * 180.96693 * 9 8 6 11 11 C 1.55160 * 102.86219 * 22.52993 * 10 9 8 12 12 H 1.08998 * 111.03865 * 82.39116 * 11 10 9 13 13 C 1.52995 * 111.00554 * 206.22537 * 11 10 9 14 14 N 1.46498 * 109.47338 * 287.19692 * 13 11 10 15 15 C 1.46497 * 119.99849 * 89.99738 * 14 13 11 16 16 C 1.34773 * 119.99746 * 269.99739 * 14 13 11 17 17 O 1.21279 * 120.00340 * 359.97438 * 16 14 13 18 18 C 1.50704 * 119.99747 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47003 * 179.97438 * 18 16 14 20 20 C 1.76204 * 99.99856 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99789 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99575 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99419 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00294 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47117 * 89.99606 * 24 22 20 26 26 H 1.48504 * 109.46876 * 209.99759 * 24 22 20 27 27 H 1.48495 * 109.47094 * 329.99554 * 24 22 20 28 28 C 1.47417 * 125.64916 * 185.08148 * 8 6 2 29 29 H 1.08996 * 109.46949 * 175.03261 * 1 2 3 30 30 H 1.09002 * 109.46933 * 55.03844 * 1 2 3 31 31 H 1.09003 * 109.46815 * 295.03773 * 1 2 3 32 32 H 1.08993 * 109.88706 * 300.51158 * 9 8 6 33 33 H 1.09000 * 109.88468 * 61.68190 * 9 8 6 34 34 H 1.08992 * 110.92936 * 264.11497 * 10 9 8 35 35 H 1.09005 * 110.74215 * 140.85256 * 10 9 8 36 36 H 1.09008 * 109.46546 * 47.19684 * 13 11 10 37 37 H 1.09000 * 109.47414 * 167.18958 * 13 11 10 38 38 H 1.09004 * 109.47368 * 90.00120 * 15 14 13 39 39 H 1.09002 * 109.46912 * 210.00211 * 15 14 13 40 40 H 1.08999 * 109.47693 * 329.99843 * 15 14 13 41 41 H 1.08998 * 109.47045 * 300.00189 * 18 16 14 42 42 H 1.09004 * 109.46952 * 60.00576 * 18 16 14 43 43 H 0.96999 * 119.99592 * 180.02562 * 23 22 20 44 44 H 1.09007 * 110.36451 * 274.67076 * 28 8 6 45 45 H 1.08995 * 110.36803 * 36.99461 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0324 -0.7104 -1.2304 7 8 2.1505 -1.9175 -1.2279 8 7 2.3504 -0.0045 -2.3336 9 6 2.3497 1.4617 -2.4423 10 6 2.7539 1.8141 -3.8893 11 6 2.4015 0.5210 -4.6710 12 1 1.3421 0.4945 -4.9262 13 6 3.2680 0.3846 -5.9245 14 7 2.8312 1.3579 -6.9285 15 6 3.4276 2.6957 -6.9598 16 6 1.8808 1.0227 -7.8233 17 8 1.3874 -0.0850 -7.7977 18 6 1.4310 2.0241 -8.8557 19 16 0.1559 1.2799 -9.9028 20 6 -0.1761 2.6292 -10.9863 21 1 0.3604 3.5593 -10.8705 22 6 -1.1265 2.4963 -11.9891 23 7 -1.3749 3.5045 -12.7982 24 14 -2.0539 0.8873 -12.1897 25 1 -3.2892 0.9219 -11.3661 26 1 -2.4160 0.6993 -13.6176 27 1 -1.1938 -0.2386 -11.7448 28 6 2.7501 -0.5747 -3.6329 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3633 0.5889 -0.8422 31 1 -0.3633 0.4349 0.9311 32 1 1.3534 1.8488 -2.2290 33 1 3.0716 1.8855 -1.7442 34 1 3.8211 2.0256 -3.9549 35 1 2.1714 2.6585 -4.2581 36 1 4.3108 0.5709 -5.6673 37 1 3.1678 -0.6232 -6.3277 38 1 4.3012 2.6889 -7.6116 39 1 2.6970 3.4103 -7.3388 40 1 3.7282 2.9832 -5.9523 41 1 1.0240 2.9032 -8.3560 42 1 2.2810 2.3174 -9.4719 43 1 -2.0393 3.4117 -13.4988 44 1 3.8205 -0.7806 -3.6437 45 1 2.1859 -1.4845 -3.8377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530190957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = -65.898790 kcal Electronic energy + Delta-G solvation = -26403.123987 eV Core-core repulsion = 22546.109487 eV Total energy + Delta-G solvation = -3857.014501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52740 -40.79890 -38.93649 -37.68288 -36.53701 -34.65052 -34.55114 -33.11958 -31.09273 -30.23953 -28.06501 -27.82717 -26.80494 -25.68429 -24.07999 -21.88170 -21.05418 -20.56124 -19.49673 -18.57882 -18.50693 -17.91115 -17.59052 -17.11546 -16.93077 -16.58401 -16.35679 -15.78266 -15.50289 -15.19397 -14.89644 -14.72897 -14.57929 -14.31905 -14.28761 -14.08297 -13.85538 -13.68439 -13.56654 -13.50631 -13.33968 -13.22610 -13.07413 -13.01983 -12.93669 -12.78597 -12.58423 -12.50794 -12.22750 -11.85832 -11.73847 -11.53113 -11.15348 -11.03820 -10.86553 -10.48092 -9.75201 -9.62258 -8.97230 -8.49795 -6.19845 1.01666 1.23303 1.32019 1.37682 1.48425 1.57275 1.59983 1.62826 2.03957 2.18883 2.26366 2.72391 2.78302 2.88715 3.31745 3.61186 3.66463 3.73687 3.88461 3.93580 4.02860 4.22652 4.33644 4.35165 4.41157 4.41559 4.51439 4.57679 4.70440 4.74912 4.75994 4.82609 4.85407 4.95030 5.02192 5.07195 5.13531 5.20549 5.26605 5.36641 5.64407 5.72852 6.13584 6.29666 6.30725 6.44490 6.92896 6.96086 7.17000 8.62303 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.002083 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.026064 B =13436.480944 C =13974.800643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.003 3.997 3 H 0.183 0.817 4 C 0.240 3.760 5 N -0.471 5.471 6 C 0.533 3.467 7 O -0.585 6.585 8 N -0.609 5.609 9 C 0.085 3.915 10 C -0.120 4.120 11 C -0.110 4.110 12 H 0.063 0.937 13 C 0.127 3.873 14 N -0.603 5.603 15 C 0.066 3.934 16 C 0.530 3.470 17 O -0.564 6.564 18 C -0.105 4.105 19 S -0.184 6.184 20 C -0.525 4.525 21 H 0.064 0.936 22 C 0.047 3.953 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.239 1.239 28 C 0.113 3.887 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.276 0.724 44 H 0.085 0.915 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.271 3.783 24.297 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 H 0.200 0.800 4 C -0.079 4.079 5 N -0.147 5.147 6 C 0.320 3.680 7 O -0.465 6.465 8 N -0.341 5.341 9 C -0.036 4.036 10 C -0.158 4.158 11 C -0.130 4.130 12 H 0.082 0.918 13 C 0.004 3.996 14 N -0.336 5.336 15 C -0.076 4.076 16 C 0.317 3.683 17 O -0.442 6.442 18 C -0.255 4.255 19 S 0.043 5.957 20 C -0.672 4.672 21 H 0.083 0.917 22 C -0.159 4.159 23 N -0.554 5.554 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.186 1.186 27 H -0.163 1.163 28 C -0.010 4.010 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.109 0.794 25.660 27.973 hybrid contribution -0.276 0.686 -1.176 1.390 sum 10.832 1.481 24.484 26.814 Atomic orbital electron populations 1.21817 0.87553 1.03919 1.06486 1.19100 1.00118 1.00954 0.81924 0.80001 1.28843 0.92392 0.92633 0.93991 1.81230 1.09913 1.09617 1.13948 1.20163 0.77118 0.86562 0.84178 1.90781 1.55375 1.16562 1.83767 1.48487 1.65885 1.09351 1.10357 1.22580 1.04477 0.77406 0.99112 1.22838 1.04055 0.96539 0.92328 1.22626 1.00275 0.96189 0.93948 0.91846 1.21448 0.99018 0.92733 0.86399 1.47743 1.38648 1.16175 1.31061 1.22216 0.99024 0.81072 1.05254 1.20035 0.79370 0.87264 0.81603 1.90695 1.56520 1.23830 1.73198 1.23285 1.01897 1.01527 0.98818 1.84795 1.50475 1.22811 1.37655 1.22442 1.26892 0.99740 1.18170 0.91733 1.25522 0.96526 0.99780 0.94066 1.70012 1.33941 1.32578 1.18850 0.85903 0.80580 0.81148 0.78963 1.18725 1.18558 1.16266 1.22161 1.00769 0.96508 0.81570 0.93066 0.87600 0.88066 0.88477 0.87522 0.87767 0.88466 0.86327 0.92115 0.91377 0.90860 0.87089 0.86753 0.87272 0.91441 0.89686 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.13 71.98 0.66 -0.10 16 2 C 0.00 0.02 2.81 -13.34 -0.04 -0.01 16 3 H 0.18 -0.37 6.99 -2.39 -0.02 -0.39 16 4 C 0.24 4.09 14.14 89.44 1.27 5.36 16 5 N -0.47 -11.37 18.54 20.01 0.37 -11.00 16 6 C 0.53 8.61 6.82 87.66 0.60 9.20 16 7 O -0.59 -16.27 16.73 -3.03 -0.05 -16.32 16 8 N -0.61 -6.95 3.33 -811.82 -2.70 -9.65 16 9 C 0.09 0.19 5.95 86.73 0.52 0.70 16 10 C -0.12 -0.43 5.03 31.78 0.16 -0.27 16 11 C -0.11 -1.39 3.25 -9.40 -0.03 -1.42 16 12 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 13 C 0.13 1.88 4.91 86.38 0.42 2.30 16 14 N -0.60 -11.39 2.84 -846.76 -2.41 -13.80 16 15 C 0.07 0.68 10.05 127.77 1.28 1.96 16 16 C 0.53 16.54 7.69 87.66 0.67 17.21 16 17 O -0.56 -22.73 15.44 -3.03 -0.05 -22.78 16 18 C -0.10 -3.64 4.71 71.24 0.34 -3.30 16 19 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 20 C -0.52 -29.60 10.04 67.95 0.68 -28.92 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.05 2.67 5.50 84.86 0.47 3.14 16 23 N -0.92 -54.54 13.97 21.65 0.30 -54.24 16 24 Si 0.91 44.30 27.74 68.60 1.90 46.20 16 25 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 28 C 0.11 1.64 6.36 86.86 0.55 2.20 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.11 -0.33 7.99 -2.39 -0.02 -0.35 16 34 H 0.10 -0.05 7.58 -2.39 -0.02 -0.07 16 35 H 0.10 0.27 8.07 -2.38 -0.02 0.25 16 36 H 0.12 0.87 7.90 -2.38 -0.02 0.85 16 37 H 0.06 1.29 7.42 -2.39 -0.02 1.27 16 38 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.07 0.87 6.44 -2.39 -0.02 0.85 16 40 H 0.11 0.30 6.41 -2.39 -0.02 0.29 16 41 H 0.11 3.56 7.40 -2.40 -0.02 3.54 16 42 H 0.11 3.53 8.11 -2.39 -0.02 3.51 16 43 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.08 1.05 8.04 -2.38 -0.02 1.03 16 45 H 0.05 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -89.66 390.12 4.83 -84.83 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: 0.96 Total: -1.27 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 7.55 Total: 8.05 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -4.44 Total: -88.69 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.10 Total: -39.10 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -89.66 4.83 -84.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530190957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.935 kcal (2) G-P(sol) polarization free energy of solvation -89.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds