Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47187 * 2 1 4 4 C 1.53004 * 109.46689 * 240.00122 * 2 1 3 5 5 N 1.46502 * 109.46864 * 65.00323 * 4 2 1 6 6 C 1.34782 * 119.99661 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00097 * 179.72239 * 6 5 4 9 9 S 1.80997 * 109.47430 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00274 * 179.97438 * 9 8 6 11 11 H 1.07996 * 119.99783 * 0.02562 * 10 9 8 12 12 C 1.38794 * 120.00028 * 180.02562 * 10 9 8 13 13 N 1.31633 * 119.99712 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00274 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46923 * 89.99993 * 14 12 10 16 16 H 1.48491 * 109.47330 * 209.99983 * 14 12 10 17 17 H 1.48502 * 109.46773 * 330.00549 * 14 12 10 18 18 C 1.52999 * 109.47227 * 120.00268 * 2 1 3 19 19 N 1.46498 * 109.46779 * 294.99910 * 18 2 1 20 20 C 1.34776 * 119.99658 * 180.02562 * 19 18 2 21 21 O 1.21697 * 120.00335 * 355.23404 * 20 19 18 22 22 C 1.46676 * 120.00334 * 175.23255 * 20 19 18 23 23 C 1.37880 * 126.23088 * 358.00442 * 22 20 19 24 24 C 1.39835 * 107.08744 * 180.02562 * 23 22 20 25 25 C 1.35457 * 107.86182 * 359.97438 * 24 23 22 26 26 N 1.35535 * 108.87196 * 359.73436 * 25 24 23 27 27 C 1.46497 * 125.67597 * 180.29914 * 26 25 24 28 28 H 1.09005 * 109.46919 * 300.00077 * 1 2 3 29 29 H 1.08997 * 109.47497 * 59.99555 * 1 2 3 30 30 H 1.08997 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47492 * 304.99902 * 4 2 1 32 32 H 1.09000 * 109.47074 * 185.00052 * 4 2 1 33 33 H 0.96995 * 120.00733 * 359.97438 * 5 4 2 34 34 H 1.08997 * 109.47081 * 299.99935 * 8 6 5 35 35 H 1.09003 * 109.47227 * 59.99733 * 8 6 5 36 36 H 0.97007 * 119.99461 * 179.97438 * 13 12 10 37 37 H 1.08997 * 109.47113 * 54.99808 * 18 2 1 38 38 H 1.09001 * 109.47129 * 174.99940 * 18 2 1 39 39 H 0.97001 * 120.00540 * 359.97438 * 19 18 2 40 40 H 1.07995 * 126.45337 * 359.95762 * 23 22 20 41 41 H 1.07994 * 126.06637 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.56240 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47460 * 265.98390 * 27 26 25 44 44 H 1.09005 * 109.47330 * 25.98942 * 27 26 25 45 45 H 1.09001 * 109.46996 * 145.98227 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 1.9954 -0.4135 -3.6661 7 8 2.6253 -1.4437 -3.7794 8 6 1.5913 0.3615 -4.8936 9 16 2.1959 -0.4908 -6.3715 10 6 1.5990 0.6002 -7.6197 11 1 1.0434 1.4842 -7.3436 12 6 1.8430 0.3236 -8.9577 13 7 1.3967 1.1384 -9.8902 14 14 2.8047 -1.2050 -9.4353 15 1 1.8665 -2.3398 -9.6285 16 1 3.5417 -0.9514 -10.6992 17 1 3.7703 -1.5390 -8.3576 18 6 2.0400 -0.7213 1.2492 19 7 1.6524 0.0353 2.4423 20 6 1.9965 -0.4132 3.6658 21 8 2.5526 -1.4890 3.7854 22 6 1.7007 0.3954 4.8533 23 6 1.1137 1.6430 4.8642 24 6 1.0221 2.0423 6.2012 25 6 1.5426 1.0534 6.9667 26 7 1.9528 0.0444 6.1602 27 6 2.5659 -1.2096 6.6050 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -1.7197 -1.2953 32 1 3.1262 -0.7995 -1.2057 33 1 1.1482 0.8592 -2.3518 34 1 0.5047 0.4354 -4.9354 35 1 2.0220 1.3619 -4.8499 36 1 1.5675 0.9452 -10.8254 37 1 1.6054 -1.7198 1.2951 38 1 3.1263 -0.7995 1.2055 39 1 1.1489 0.8594 2.3517 40 1 0.7873 2.2061 4.0024 41 1 0.6089 2.9734 6.5598 42 1 1.6151 1.0653 8.0443 43 1 3.6512 -1.1121 6.5806 44 1 2.2437 -1.4307 7.6226 45 1 2.2588 -2.0191 5.9428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532106950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -61.276762 kcal Electronic energy + Delta-G solvation = -25376.641585 eV Core-core repulsion = 21519.827510 eV Total energy + Delta-G solvation = -3856.814074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30511 -40.78696 -40.17059 -37.95828 -35.66727 -34.66412 -33.96142 -33.22421 -31.03912 -30.26693 -27.91495 -27.72146 -27.38265 -26.41442 -23.42446 -21.85489 -21.71242 -21.38328 -20.53792 -19.83391 -18.84389 -17.80661 -17.64012 -17.10695 -16.97055 -16.79953 -16.67369 -16.36757 -16.04457 -15.62732 -15.29879 -15.05704 -14.87366 -14.66167 -14.49113 -14.24813 -14.11664 -13.93880 -13.66469 -13.39869 -13.32747 -13.24519 -13.18544 -13.00309 -12.89646 -12.67310 -12.19085 -12.16445 -11.86937 -11.85852 -11.17214 -11.16453 -10.99875 -10.52003 -10.23322 -10.12610 -9.68466 -9.17088 -8.98615 -8.50938 -6.21473 0.46901 1.00011 1.31796 1.47197 1.54934 1.58344 1.67740 1.83081 2.18959 2.25867 2.36506 2.45999 2.73791 2.87559 3.63574 3.77832 3.81637 3.84410 3.96562 3.98262 4.19831 4.25516 4.35640 4.39889 4.48839 4.49368 4.50298 4.55740 4.70808 4.73471 4.77109 4.87981 4.96760 5.14749 5.18243 5.27870 5.29647 5.38934 5.44135 5.71493 5.81847 6.03035 6.12262 6.30800 6.47078 6.50087 6.94661 7.13655 7.21451 8.61307 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037724 B = 0.001527 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.048760 B =18338.083648 C =18883.542433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 H 0.108 0.892 4 C 0.127 3.873 5 N -0.707 5.707 6 C 0.534 3.466 7 O -0.565 6.565 8 C -0.111 4.111 9 S -0.180 6.180 10 C -0.528 4.528 11 H 0.064 0.936 12 C 0.047 3.953 13 N -0.916 5.916 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.259 1.259 17 H -0.238 1.238 18 C 0.133 3.867 19 N -0.702 5.702 20 C 0.583 3.417 21 O -0.589 6.589 22 C -0.092 4.092 23 C -0.135 4.135 24 C -0.222 4.222 25 C 0.020 3.980 26 N -0.423 5.423 27 C 0.068 3.932 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.418 0.582 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.277 0.723 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.200 0.800 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 3.187 37.987 38.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 H 0.127 0.873 4 C 0.003 3.997 5 N -0.361 5.361 6 C 0.319 3.681 7 O -0.444 6.444 8 C -0.262 4.262 9 S 0.047 5.953 10 C -0.676 4.676 11 H 0.082 0.918 12 C -0.159 4.159 13 N -0.554 5.554 14 Si 0.735 3.265 15 H -0.188 1.188 16 H -0.184 1.184 17 H -0.162 1.162 18 C 0.008 3.992 19 N -0.354 5.354 20 C 0.372 3.628 21 O -0.472 6.472 22 C -0.205 4.205 23 C -0.161 4.161 24 C -0.245 4.245 25 C -0.116 4.116 26 N -0.096 5.096 27 C -0.073 4.073 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.256 0.744 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.255 0.745 40 H 0.183 0.817 41 H 0.181 0.819 42 H 0.217 0.783 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.339 0.431 37.779 37.805 hybrid contribution -0.823 1.331 -0.738 1.730 sum -2.162 1.762 37.041 37.145 Atomic orbital electron populations 1.21927 0.92951 1.02687 1.03328 1.21428 0.97724 1.01135 0.91165 0.87338 1.21280 1.00007 0.95325 0.83124 1.45640 1.57959 1.28446 1.04103 1.19964 0.78579 0.84683 0.84829 1.90701 1.40956 1.25794 1.86906 1.23269 1.06013 1.03158 0.93714 1.84764 1.74429 1.36940 0.99212 1.22465 1.40649 1.11246 0.93239 0.91800 1.25536 0.95543 0.99398 0.95381 1.70018 1.45682 1.38415 1.01326 0.85885 0.80674 0.79867 0.80055 1.18765 1.18372 1.16161 1.21208 0.99962 0.95237 0.82760 1.45429 1.57411 1.28329 1.04203 1.17278 0.77878 0.84305 0.83305 1.90784 1.45510 1.23821 1.87098 1.20103 1.16287 0.99123 0.84982 1.21736 1.01554 0.93560 0.99281 1.21220 1.08860 1.01724 0.92738 1.22702 1.02402 0.88190 0.98332 1.44122 1.44664 1.15785 1.05013 1.22280 0.98985 0.83473 1.02567 0.90559 0.91220 0.92974 0.92081 0.91960 0.74409 0.86658 0.86636 0.91399 0.91803 0.91743 0.74520 0.81726 0.81920 0.78337 0.90645 0.86811 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.94 71.98 0.64 -0.71 16 2 C -0.10 -1.00 2.46 -10.79 -0.03 -1.03 16 3 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.13 2.32 5.06 86.38 0.44 2.76 16 5 N -0.71 -14.69 5.28 -463.06 -2.45 -17.14 16 6 C 0.53 17.51 7.85 87.65 0.69 18.19 16 7 O -0.57 -23.81 15.86 -3.03 -0.05 -23.86 16 8 C -0.11 -3.99 6.16 71.23 0.44 -3.56 16 9 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 10 C -0.53 -30.50 10.04 67.95 0.68 -29.81 16 11 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 12 C 0.05 2.74 5.50 84.86 0.47 3.20 16 13 N -0.92 -55.51 13.97 21.65 0.30 -55.20 16 14 Si 0.91 44.96 27.74 68.60 1.90 46.87 16 15 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 18 C 0.13 1.86 5.07 86.38 0.44 2.30 16 19 N -0.70 -9.02 5.26 -467.09 -2.46 -11.48 16 20 C 0.58 11.31 7.78 86.45 0.67 11.98 16 21 O -0.59 -15.67 14.80 -4.34 -0.06 -15.74 16 22 C -0.09 -1.53 6.89 40.35 0.28 -1.25 16 23 C -0.13 -1.58 10.35 22.57 0.23 -1.34 16 24 C -0.22 -2.22 10.81 22.01 0.24 -1.98 16 25 C 0.02 0.19 11.37 83.48 0.95 1.14 16 26 N -0.42 -6.06 3.16 -534.31 -1.69 -7.75 16 27 C 0.07 0.78 10.44 127.77 1.33 2.11 16 28 H 0.08 0.43 7.18 -2.38 -0.02 0.42 16 29 H 0.07 0.58 7.18 -2.39 -0.02 0.56 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.42 5.71 7.65 -92.71 -0.71 5.00 16 34 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 35 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.42 2.87 6.56 -92.71 -0.61 2.26 16 40 H 0.17 0.98 7.45 -2.91 -0.02 0.96 16 41 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 42 H 0.20 0.48 8.06 -2.91 -0.02 0.45 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 0.52 8.13 -2.38 -0.02 0.50 16 45 H 0.08 1.25 6.62 -2.39 -0.02 1.24 16 Total: -1.00 -83.07 390.80 1.58 -81.49 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -0.34 Total: 10.86 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 7.47 Total: 2.00 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -6.29 Total: -91.57 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.11 Total: -39.59 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -83.07 1.58 -81.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532106950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.212 kcal (2) G-P(sol) polarization free energy of solvation -83.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds