Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 C 1.52998 * 109.47555 * 120.00591 * 2 1 3 5 5 N 1.46503 * 109.46844 * 294.99711 * 4 2 1 6 6 C 1.34771 * 119.99881 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00133 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99873 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46965 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99882 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00067 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00088 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00235 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47031 * 90.00091 * 14 12 10 16 16 H 1.48500 * 109.47048 * 210.00250 * 14 12 10 17 17 H 1.48506 * 109.46833 * 329.99864 * 14 12 10 18 18 C 1.53002 * 109.46688 * 240.00434 * 2 1 3 19 19 N 1.46499 * 109.47468 * 64.99656 * 18 2 1 20 20 C 1.34771 * 120.00227 * 179.97438 * 19 18 2 21 21 O 1.21702 * 120.00101 * 5.15363 * 20 19 18 22 22 C 1.46679 * 120.00166 * 185.14551 * 20 19 18 23 23 C 1.37874 * 126.23117 * 5.69721 * 22 20 19 24 24 C 1.39835 * 107.08252 * 179.97438 * 23 22 20 25 25 C 1.35451 * 107.86848 * 0.02562 * 24 23 22 26 26 N 1.35533 * 108.87023 * 359.97438 * 25 24 23 27 27 C 1.46498 * 125.67890 * 179.73357 * 26 25 24 28 28 H 1.08995 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46495 * 299.99537 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99362 * 1 2 3 31 31 H 1.08998 * 109.47064 * 54.99160 * 4 2 1 32 32 H 1.09000 * 109.47140 * 174.99528 * 4 2 1 33 33 H 0.97004 * 120.00071 * 359.97438 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00005 * 8 6 5 35 35 H 1.09000 * 109.47296 * 60.00400 * 8 6 5 36 36 H 0.97000 * 120.00210 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46933 * 304.99837 * 18 2 1 38 38 H 1.09007 * 109.47303 * 185.00282 * 18 2 1 39 39 H 0.96998 * 119.99562 * 0.02562 * 19 18 2 40 40 H 1.08002 * 126.45767 * 0.02562 * 23 22 20 41 41 H 1.08005 * 126.06583 * 180.02562 * 24 23 22 42 42 H 1.07996 * 125.56682 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47118 * 86.02707 * 27 26 25 44 44 H 1.08996 * 109.47465 * 206.02722 * 27 26 25 45 45 H 1.09001 * 109.47349 * 326.03423 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6526 0.0352 2.4423 6 6 1.9958 -0.4138 3.6658 7 8 2.6258 -1.4440 3.7790 8 6 1.5977 0.3648 4.8932 9 16 2.2010 -0.4887 6.3710 10 6 1.6117 0.6067 7.6189 11 1 1.0597 1.4930 7.3428 12 6 1.8577 0.3312 8.9568 13 7 2.5318 -0.7482 9.2934 14 14 1.2335 1.4929 10.2799 15 1 -0.1282 1.0770 10.7015 16 1 2.1485 1.4493 11.4487 17 1 1.1843 2.8759 9.7411 18 6 2.0399 -0.7212 -1.2493 19 7 1.6523 0.0354 -2.4424 20 6 1.9962 -0.4129 -3.6660 21 8 2.5459 -1.4920 -3.7863 22 6 1.7077 0.3995 -4.8526 23 6 1.1941 1.6790 -4.8590 24 6 1.0805 2.0694 -6.1970 25 6 1.5165 1.0442 -6.9675 26 7 1.9006 0.0235 -6.1627 27 6 2.4271 -1.2675 -6.6123 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7198 1.2950 32 1 3.1264 -0.7996 1.2053 33 1 1.1490 0.8593 2.3518 34 1 2.0331 1.3630 4.8473 35 1 0.5114 0.4438 4.9369 36 1 2.7035 -0.9409 10.2284 37 1 1.6052 -1.7198 -1.2953 38 1 3.1263 -0.7995 -1.2058 39 1 1.1487 0.8595 -2.3517 40 1 0.9301 2.2689 -3.9938 41 1 0.7108 3.0197 -6.5529 42 1 1.5529 1.0409 -8.0468 43 1 3.5034 -1.1876 -6.7652 44 1 2.2228 -2.0263 -5.8570 45 1 1.9470 -1.5492 -7.5495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532106953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -34.406680 kcal Electronic energy + Delta-G solvation = -25328.276839 eV Core-core repulsion = 21472.627938 eV Total energy + Delta-G solvation = -3855.648900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78766 -39.72067 -39.14708 -37.05673 -34.70059 -33.31261 -32.43588 -32.35262 -29.96678 -29.27308 -27.13125 -26.91569 -25.71868 -25.27389 -22.75323 -21.08560 -20.91057 -20.40147 -19.85122 -18.32526 -17.79524 -16.72225 -16.39462 -16.20414 -16.03191 -15.72514 -15.44530 -15.12104 -14.80551 -14.44320 -14.36105 -14.00083 -13.82517 -13.72990 -13.58291 -13.15323 -13.03075 -12.93276 -12.80940 -12.69067 -12.56057 -12.42948 -11.93593 -11.57943 -11.39191 -11.24276 -11.06542 -11.02584 -10.76534 -10.37922 -9.81908 -9.52891 -9.42436 -9.19261 -9.07307 -8.90661 -8.65903 -8.23741 -6.50220 -6.21777 -3.92472 1.05376 2.18143 2.30704 2.86755 2.99895 3.09097 3.09316 3.22228 3.28251 3.32657 3.71397 4.20225 4.27257 4.39476 4.42973 4.48701 4.51585 4.55830 4.79660 4.93753 4.97977 5.02879 5.13333 5.13502 5.19029 5.28441 5.34325 5.44942 5.53874 5.60613 5.61902 5.67289 5.73902 5.87042 5.88675 5.90959 6.00588 6.12951 6.30057 6.53604 6.58163 6.74601 7.07072 7.59262 7.67934 7.78820 8.34931 8.60198 9.23499 10.85628 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.001488 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.189850 B =18817.820170 C =19405.314949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.129 3.871 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.129 3.871 19 N -0.716 5.716 20 C 0.589 3.411 21 O -0.548 6.548 22 C -0.054 4.054 23 C -0.141 4.141 24 C -0.207 4.207 25 C 0.014 3.986 26 N -0.410 5.410 27 C 0.064 3.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.403 0.597 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.169 0.831 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 6.094 -33.839 34.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 H 0.104 0.896 4 C 0.004 3.996 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.005 3.995 19 N -0.367 5.367 20 C 0.377 3.623 21 O -0.427 6.427 22 C -0.168 4.168 23 C -0.168 4.168 24 C -0.231 4.231 25 C -0.122 4.122 26 N -0.083 5.083 27 C -0.077 4.077 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.239 0.761 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.362 3.094 -33.662 33.970 hybrid contribution -1.603 2.820 0.600 3.299 sum -4.966 5.914 -33.062 33.952 Atomic orbital electron populations 1.21903 0.93926 1.02954 1.02052 1.21599 0.97196 1.00810 0.93808 0.89584 1.21159 1.00309 0.95415 0.82720 1.45962 1.59761 1.28102 1.05456 1.20309 0.78689 0.85493 0.83773 1.90713 1.38306 1.23856 1.86176 1.23528 1.04790 1.03451 0.98624 1.85417 1.72801 1.32982 0.92167 1.22869 1.41544 1.11239 0.92800 0.90924 1.24991 0.94825 0.95807 0.97931 1.70019 1.37394 1.24671 1.18178 0.86169 0.78666 0.80400 0.80263 1.20273 1.20746 1.19707 1.21334 1.00610 0.95445 0.82102 1.45590 1.57904 1.28151 1.05101 1.16971 0.78336 0.84695 0.82329 1.90802 1.43645 1.21907 1.86387 1.20040 1.14942 0.97091 0.84694 1.21359 1.03531 0.93885 0.97995 1.20848 1.09304 1.00124 0.92846 1.22063 1.04821 0.88367 0.96929 1.43879 1.46249 1.13348 1.04816 1.22314 1.00049 0.83223 1.02148 0.91878 0.91799 0.92462 0.91133 0.91214 0.76823 0.89227 0.89232 0.92175 0.90564 0.90701 0.76132 0.83868 0.83906 0.81381 0.90457 0.87701 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.94 37.16 0.33 -0.60 16 2 C -0.11 -0.78 2.46 -90.62 -0.22 -1.00 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 4 C 0.13 1.36 5.06 -4.04 -0.02 1.34 16 5 N -0.74 -9.09 5.28 -60.29 -0.32 -9.41 16 6 C 0.53 9.65 7.85 -10.99 -0.09 9.57 16 7 O -0.52 -11.64 15.86 5.55 0.09 -11.55 16 8 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 14 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.13 1.00 5.07 -4.04 -0.02 0.98 16 19 N -0.72 -5.20 5.26 -61.61 -0.32 -5.52 16 20 C 0.59 5.85 7.77 -12.86 -0.10 5.75 16 21 O -0.55 -7.08 14.67 5.19 0.08 -7.01 16 22 C -0.05 -0.48 6.88 -81.98 -0.56 -1.04 16 23 C -0.14 -1.00 10.35 -39.12 -0.40 -1.40 16 24 C -0.21 -1.33 10.81 -39.98 -0.43 -1.76 16 25 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 26 N -0.41 -3.22 3.16 -120.24 -0.38 -3.60 16 27 C 0.06 0.39 10.64 59.85 0.64 1.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.40 7.18 -51.93 -0.37 0.03 16 30 H 0.06 0.28 7.18 -51.93 -0.37 -0.10 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.68 7.66 -40.82 -0.31 3.36 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 1.96 6.61 -40.82 -0.27 1.69 16 40 H 0.14 0.66 7.49 -52.49 -0.39 0.27 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.83 6.22 -51.93 -0.32 0.51 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -37.64 393.25 -8.75 -46.39 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.66 Total: 0.71 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.66 Total: -2.99 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.29 Total: -43.92 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.56 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.64 -8.75 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532106953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.981 kcal (2) G-P(sol) polarization free energy of solvation -37.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds