Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 C 1.52998 * 109.47555 * 120.00591 * 2 1 3 5 5 N 1.46503 * 109.46844 * 294.99711 * 4 2 1 6 6 C 1.34771 * 119.99881 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00133 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99873 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46965 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99882 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00067 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00088 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00235 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47031 * 90.00091 * 14 12 10 16 16 H 1.48500 * 109.47048 * 210.00250 * 14 12 10 17 17 H 1.48506 * 109.46833 * 329.99864 * 14 12 10 18 18 C 1.53002 * 109.46688 * 240.00434 * 2 1 3 19 19 N 1.46499 * 109.47468 * 64.99656 * 18 2 1 20 20 C 1.34771 * 120.00227 * 179.97438 * 19 18 2 21 21 O 1.21702 * 120.00101 * 5.15363 * 20 19 18 22 22 C 1.46679 * 120.00166 * 185.14551 * 20 19 18 23 23 C 1.37874 * 126.23117 * 5.69721 * 22 20 19 24 24 C 1.39835 * 107.08252 * 179.97438 * 23 22 20 25 25 C 1.35451 * 107.86848 * 0.02562 * 24 23 22 26 26 N 1.35533 * 108.87023 * 359.97438 * 25 24 23 27 27 C 1.46498 * 125.67890 * 179.73357 * 26 25 24 28 28 H 1.08995 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46495 * 299.99537 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99362 * 1 2 3 31 31 H 1.08998 * 109.47064 * 54.99160 * 4 2 1 32 32 H 1.09000 * 109.47140 * 174.99528 * 4 2 1 33 33 H 0.97004 * 120.00071 * 359.97438 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00005 * 8 6 5 35 35 H 1.09000 * 109.47296 * 60.00400 * 8 6 5 36 36 H 0.97000 * 120.00210 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46933 * 304.99837 * 18 2 1 38 38 H 1.09007 * 109.47303 * 185.00282 * 18 2 1 39 39 H 0.96998 * 119.99562 * 0.02562 * 19 18 2 40 40 H 1.08002 * 126.45767 * 0.02562 * 23 22 20 41 41 H 1.08005 * 126.06583 * 180.02562 * 24 23 22 42 42 H 1.07996 * 125.56682 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47118 * 86.02707 * 27 26 25 44 44 H 1.08996 * 109.47465 * 206.02722 * 27 26 25 45 45 H 1.09001 * 109.47349 * 326.03423 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6526 0.0352 2.4423 6 6 1.9958 -0.4138 3.6658 7 8 2.6258 -1.4440 3.7790 8 6 1.5977 0.3648 4.8932 9 16 2.2010 -0.4887 6.3710 10 6 1.6117 0.6067 7.6189 11 1 1.0597 1.4930 7.3428 12 6 1.8577 0.3312 8.9568 13 7 2.5318 -0.7482 9.2934 14 14 1.2335 1.4929 10.2799 15 1 -0.1282 1.0770 10.7015 16 1 2.1485 1.4493 11.4487 17 1 1.1843 2.8759 9.7411 18 6 2.0399 -0.7212 -1.2493 19 7 1.6523 0.0354 -2.4424 20 6 1.9962 -0.4129 -3.6660 21 8 2.5459 -1.4920 -3.7863 22 6 1.7077 0.3995 -4.8526 23 6 1.1941 1.6790 -4.8590 24 6 1.0805 2.0694 -6.1970 25 6 1.5165 1.0442 -6.9675 26 7 1.9006 0.0235 -6.1627 27 6 2.4271 -1.2675 -6.6123 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7198 1.2950 32 1 3.1264 -0.7996 1.2053 33 1 1.1490 0.8593 2.3518 34 1 2.0331 1.3630 4.8473 35 1 0.5114 0.4438 4.9369 36 1 2.7035 -0.9409 10.2284 37 1 1.6052 -1.7198 -1.2953 38 1 3.1263 -0.7995 -1.2058 39 1 1.1487 0.8595 -2.3517 40 1 0.9301 2.2689 -3.9938 41 1 0.7108 3.0197 -6.5529 42 1 1.5529 1.0409 -8.0468 43 1 3.5034 -1.1876 -6.7652 44 1 2.2228 -2.0263 -5.8570 45 1 1.9470 -1.5492 -7.5495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532106953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -61.556779 kcal Electronic energy + Delta-G solvation = -25329.454155 eV Core-core repulsion = 21472.627938 eV Total energy + Delta-G solvation = -3856.826217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.30671 -40.75235 -40.16449 -37.95114 -35.65851 -34.57252 -33.95201 -33.21154 -30.97839 -30.25208 -27.83946 -27.62077 -27.38054 -26.37845 -23.41800 -21.83160 -21.69241 -21.38383 -20.53356 -19.78553 -18.83152 -17.74679 -17.62638 -16.95615 -16.87484 -16.82561 -16.64429 -16.38360 -16.03187 -15.70361 -15.29573 -14.98510 -14.76507 -14.51375 -14.37367 -14.22825 -14.12457 -13.91089 -13.66184 -13.33739 -13.22957 -13.17635 -13.15229 -12.88977 -12.87816 -12.61132 -12.20329 -12.16350 -11.86864 -11.71340 -11.15533 -11.13113 -10.94913 -10.25630 -10.23377 -10.10495 -9.68149 -9.17067 -8.65535 -8.33436 -6.11613 0.47086 1.27938 1.43676 1.47857 1.57486 1.63387 1.67749 1.83133 2.21721 2.28955 2.36117 2.48568 3.00868 3.33611 3.64512 3.78147 3.83676 3.84678 3.98208 4.05373 4.20085 4.32395 4.35879 4.39887 4.49101 4.50266 4.53497 4.55979 4.71207 4.73860 4.77612 4.88048 4.96855 5.14933 5.18749 5.28129 5.29759 5.39709 5.43118 5.45891 5.82199 6.03325 6.21021 6.30995 6.48403 6.53093 7.07933 7.13540 7.26979 8.75763 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.001488 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.189850 B =18817.820170 C =19405.314949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.109 0.891 4 C 0.126 3.874 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.568 6.568 8 C -0.129 4.129 9 S -0.156 6.156 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.257 1.257 18 C 0.132 3.868 19 N -0.701 5.701 20 C 0.583 3.417 21 O -0.590 6.590 22 C -0.092 4.092 23 C -0.135 4.135 24 C -0.221 4.221 25 C 0.019 3.981 26 N -0.423 5.423 27 C 0.064 3.936 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.418 0.582 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.199 0.801 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 9.420 -35.480 37.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.127 0.873 4 C 0.002 3.998 5 N -0.362 5.362 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.280 4.280 9 S 0.071 5.929 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.181 1.181 18 C 0.008 3.992 19 N -0.353 5.353 20 C 0.372 3.628 21 O -0.472 6.472 22 C -0.204 4.204 23 C -0.161 4.161 24 C -0.245 4.245 25 C -0.117 4.117 26 N -0.096 5.096 27 C -0.077 4.077 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.255 0.745 40 H 0.183 0.817 41 H 0.181 0.819 42 H 0.216 0.784 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.257 6.488 -35.337 36.310 hybrid contribution -1.050 1.813 0.911 2.284 sum -6.307 8.301 -34.426 35.970 Atomic orbital electron populations 1.21924 0.92892 1.02661 1.03353 1.21421 0.97765 1.01113 0.91049 0.87261 1.21269 0.99886 0.95333 0.83317 1.45643 1.58123 1.28383 1.04064 1.20084 0.78447 0.84711 0.84946 1.90705 1.40952 1.26061 1.86956 1.23368 1.05826 1.03343 0.95448 1.85625 1.74324 1.35960 0.96951 1.23217 1.41500 1.11398 0.93275 0.89756 1.26134 0.94781 0.97567 1.00676 1.70190 1.38961 1.26915 1.18791 0.84948 0.78092 0.78310 0.76587 1.19324 1.20425 1.18083 1.21208 0.99943 0.95246 0.82796 1.45421 1.57357 1.28335 1.04175 1.17291 0.77811 0.84353 0.83311 1.90778 1.45721 1.23717 1.87015 1.20093 1.17494 0.98020 0.84830 1.21735 1.01978 0.93116 0.99299 1.21220 1.09527 1.01108 0.92629 1.22688 1.03041 0.87610 0.98341 1.44121 1.46513 1.14083 1.04857 1.22334 1.00512 0.82354 1.02522 0.93058 0.91194 0.90451 0.92320 0.92192 0.74437 0.87037 0.87013 0.92039 0.91844 0.91793 0.74483 0.81702 0.81889 0.78383 0.90298 0.90116 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.94 71.98 0.64 -0.83 16 2 C -0.09 -1.09 2.46 -10.79 -0.03 -1.12 16 3 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.13 2.55 5.06 86.38 0.44 2.99 16 5 N -0.71 -16.07 5.28 -463.06 -2.45 -18.52 16 6 C 0.53 19.01 7.85 87.66 0.69 19.70 16 7 O -0.57 -26.26 15.86 -3.05 -0.05 -26.31 16 8 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 9 S -0.16 -8.61 20.57 -56.49 -1.16 -9.78 16 10 C -0.55 -30.95 9.50 67.95 0.65 -30.31 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 14 Si 1.00 43.28 29.55 68.60 2.03 45.30 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 C 0.13 1.99 5.07 86.38 0.44 2.43 16 19 N -0.70 -9.43 5.26 -467.06 -2.46 -11.89 16 20 C 0.58 11.62 7.77 86.45 0.67 12.29 16 21 O -0.59 -16.06 14.67 -4.35 -0.06 -16.12 16 22 C -0.09 -1.55 6.88 40.35 0.28 -1.27 16 23 C -0.13 -1.61 10.35 22.57 0.23 -1.38 16 24 C -0.22 -2.26 10.81 22.01 0.24 -2.02 16 25 C 0.02 0.19 11.38 83.48 0.95 1.14 16 26 N -0.42 -6.22 3.16 -534.32 -1.69 -7.91 16 27 C 0.06 0.76 10.64 127.77 1.36 2.12 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.63 7.18 -2.39 -0.02 0.61 16 30 H 0.08 0.48 7.18 -2.39 -0.02 0.46 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.42 6.26 7.66 -92.71 -0.71 5.55 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 35 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.42 3.06 6.61 -92.71 -0.61 2.44 16 40 H 0.17 1.03 7.49 -2.91 -0.02 1.00 16 41 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.20 0.55 8.06 -2.91 -0.02 0.53 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.38 6.22 -2.39 -0.01 1.37 16 45 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -86.12 393.25 1.60 -84.52 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.31 Total: 16.05 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 7.46 Total: 0.44 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -6.30 Total: -94.11 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.11 Total: -42.43 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -86.12 1.60 -84.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532106953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.958 kcal (2) G-P(sol) polarization free energy of solvation -86.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds