Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 N 1.46900 * 109.47276 * 179.97438 * 8 7 6 10 10 C 1.46901 * 111.00247 * 66.04621 * 9 8 7 11 11 C 1.46908 * 111.00112 * 189.99652 * 9 8 7 12 12 C 1.50702 * 109.47006 * 169.99743 * 11 9 8 13 13 O 1.21293 * 119.99932 * 0.02562 * 12 11 9 14 14 N 1.34772 * 119.99754 * 180.02562 * 12 11 9 15 15 C 1.37097 * 119.99981 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99899 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00359 * 179.97438 * 15 14 12 18 18 N 1.31418 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00370 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46888 * 89.99971 * 19 17 15 21 21 H 1.48498 * 109.47327 * 210.00155 * 19 17 15 22 22 H 1.48496 * 109.47134 * 330.00710 * 19 17 15 23 23 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 24 24 C 1.33386 * 125.20196 * 120.00529 * 23 2 1 25 25 C 1.38420 * 114.92399 * 179.97438 * 24 23 2 26 26 C 1.33388 * 114.91890 * 0.02562 * 25 24 23 27 27 S 1.75882 * 125.20367 * 299.69442 * 23 2 1 28 28 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 29 29 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 32 32 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 33 33 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 34 34 H 1.09009 * 109.47378 * 299.99899 * 8 7 6 35 35 H 1.08993 * 109.47209 * 59.99808 * 8 7 6 36 36 H 1.09001 * 109.47001 * 59.99948 * 10 9 8 37 37 H 1.08995 * 109.47627 * 179.97438 * 10 9 8 38 38 H 1.09005 * 109.46833 * 300.00346 * 10 9 8 39 39 H 1.08994 * 109.47094 * 289.99971 * 11 9 8 40 40 H 1.09004 * 109.46420 * 50.00408 * 11 9 8 41 41 H 0.96996 * 119.99928 * 0.02562 * 14 12 11 42 42 H 0.96992 * 120.00060 * 179.97438 * 18 17 15 43 43 H 1.08004 * 122.54070 * 359.97438 * 24 23 2 44 44 H 1.08004 * 122.54162 * 180.02562 * 25 24 23 45 45 H 1.08002 * 125.20488 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 6 1.6714 -0.2294 4.8998 9 7 2.1556 -0.9258 6.0992 10 6 3.6166 -0.8236 6.2136 11 6 1.4959 -0.4137 7.3078 12 6 1.8272 -1.3051 8.4769 13 8 2.5428 -2.2715 8.3190 14 7 1.3282 -1.0283 9.6979 15 6 1.6291 -1.8394 10.7614 16 1 2.2664 -2.7000 10.6208 17 6 1.1152 -1.5538 12.0203 18 7 0.3401 -0.5064 12.1915 19 14 1.5258 -2.6586 13.4695 20 1 2.7588 -2.1654 14.1342 21 1 0.4007 -2.6426 14.4387 22 1 1.7445 -4.0462 12.9878 23 6 2.0322 -0.7104 -1.2306 24 6 2.8024 -0.1646 -2.1730 25 6 3.1403 -1.0125 -3.2135 26 6 2.6441 -2.2469 -3.1164 27 16 1.6989 -2.3881 -1.6398 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.1445 0.5353 2.5435 32 1 1.8217 -1.9751 3.6463 33 1 3.2755 -0.9481 3.6549 34 1 2.0356 0.7981 4.9040 35 1 0.5815 -0.2285 4.8958 36 1 3.9033 0.2259 6.2793 37 1 3.9484 -1.3473 7.1101 38 1 4.0820 -1.2733 5.3365 39 1 1.8458 0.5982 7.5117 40 1 0.4167 -0.4011 7.1549 41 1 0.7556 -0.2556 9.8240 42 1 -0.0189 -0.3072 13.0702 43 1 3.1370 0.8613 -2.1276 44 1 3.7589 -0.6985 -4.0414 45 1 2.8022 -3.0396 -3.8326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567303984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -30.498449 kcal Electronic energy + Delta-G solvation = -25837.141851 eV Core-core repulsion = 21981.662425 eV Total energy + Delta-G solvation = -3855.479427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22710 -38.69885 -37.98070 -36.80133 -34.74085 -34.23342 -33.78160 -31.26013 -29.68508 -28.71876 -27.69608 -25.61105 -25.01303 -24.05212 -23.01930 -21.26796 -20.51308 -19.65470 -19.17880 -17.89098 -17.77121 -16.95627 -16.19142 -16.01737 -16.00364 -15.60544 -15.16751 -14.67822 -14.61609 -14.33334 -13.94851 -13.82961 -13.60100 -13.36610 -13.21237 -13.01818 -12.97057 -12.60745 -12.48407 -12.14717 -12.12035 -11.87249 -11.82304 -11.52626 -11.41392 -11.28578 -11.06694 -10.95042 -10.85871 -10.39202 -10.22452 -10.05694 -9.48512 -9.23674 -8.92328 -8.56962 -8.49186 -7.99837 -7.90206 -6.42456 -3.83159 0.74999 1.44258 1.83749 2.40102 2.45521 2.91449 3.17553 3.26427 3.32657 3.89165 4.02965 4.11261 4.25345 4.42232 4.58421 4.75655 4.82198 4.87113 4.97040 5.10902 5.14798 5.23313 5.23890 5.30347 5.34673 5.37086 5.61532 5.62671 5.67557 5.82458 5.82517 5.87825 5.91383 5.99213 6.02814 6.20255 6.21511 6.26722 6.54694 7.16436 7.24729 7.31273 7.54885 7.98361 8.05729 8.61070 9.17657 9.53506 10.05420 10.75286 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034499 B = 0.001601 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.425903 B =17485.170091 C =17710.875798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 H 0.113 0.887 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.727 5.727 7 C 0.122 3.878 8 C 0.045 3.955 9 N -0.515 5.515 10 C 0.018 3.982 11 C 0.047 3.953 12 C 0.443 3.557 13 O -0.576 6.576 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.161 4.161 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.224 4.224 27 S 0.143 5.857 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.399 0.601 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.015 0.985 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 7.055 -28.515 29.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 H 0.131 0.869 4 C 0.297 3.703 5 O -0.397 6.397 6 N -0.379 5.379 7 C -0.002 4.002 8 C -0.084 4.084 9 N -0.239 5.239 10 C -0.130 4.130 11 C -0.084 4.084 12 C 0.229 3.771 13 O -0.460 6.460 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.279 4.279 24 C -0.169 4.169 25 C -0.169 4.169 26 C -0.360 4.360 27 S 0.408 5.592 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.030 4.036 -27.872 28.181 hybrid contribution 0.614 2.472 0.318 2.567 sum -0.416 6.508 -27.554 28.315 Atomic orbital electron populations 1.21868 0.91555 1.03426 1.03371 1.19816 0.97697 0.99854 0.88992 0.86866 1.20404 0.80665 0.84927 0.84332 1.90773 1.36865 1.25619 1.86426 1.45896 1.54071 1.32252 1.05712 1.21353 0.99681 0.97027 0.82118 1.22251 1.00630 0.95276 0.90269 1.61446 1.06504 1.55370 1.00593 1.22628 0.86770 0.98967 1.04597 1.21870 0.99737 0.96502 0.90301 1.19704 0.85653 0.88046 0.83735 1.90496 1.40816 1.30620 1.84064 1.41857 1.44652 1.26962 1.06613 1.19706 1.28662 1.08339 0.86109 0.87883 1.25257 0.96511 0.97193 0.98973 1.69611 1.33287 1.26894 1.24582 0.85856 0.77851 0.80240 0.80339 1.20443 1.20936 1.19396 1.23907 1.06048 0.97815 1.00133 1.20047 1.00501 1.01499 0.94881 1.20065 1.03108 0.93209 1.00477 1.25727 1.06467 1.01526 1.02292 1.84378 1.49997 1.09107 1.15703 0.90782 0.91675 0.91147 0.76710 0.90179 0.91132 0.94579 0.90279 0.96636 0.88357 0.91853 0.93353 0.89321 0.77512 0.91895 0.84548 0.84523 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.01 37.16 0.33 -0.48 16 2 C -0.04 -0.31 3.10 -92.92 -0.29 -0.59 16 3 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 4 C 0.51 5.50 7.13 -10.98 -0.08 5.42 16 5 O -0.52 -7.88 15.23 5.55 0.08 -7.80 16 6 N -0.73 -6.53 5.44 -60.30 -0.33 -6.86 16 7 C 0.12 1.42 5.60 -4.04 -0.02 1.40 16 8 C 0.04 0.51 5.07 -3.82 -0.02 0.50 16 9 N -0.51 -8.31 4.50 -244.36 -1.10 -9.41 16 10 C 0.02 0.29 8.96 60.07 0.54 0.83 16 11 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 12 C 0.44 10.32 7.47 -10.99 -0.08 10.24 16 13 O -0.58 -15.41 13.91 5.55 0.08 -15.33 16 14 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 19 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C -0.16 -1.50 4.61 -36.00 -0.17 -1.67 16 24 C -0.14 -1.18 10.01 -41.21 -0.41 -1.59 16 25 C -0.14 -1.13 10.18 -41.21 -0.42 -1.55 16 26 C -0.22 -1.91 11.23 29.04 0.33 -1.59 16 27 S 0.14 1.43 22.17 -107.50 -2.38 -0.95 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.45 8.01 -51.93 -0.42 0.03 16 30 H 0.07 0.28 7.55 -51.93 -0.39 -0.12 16 31 H 0.40 2.30 7.88 -40.82 -0.32 1.98 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 34 H 0.04 0.37 8.12 -51.92 -0.42 -0.05 16 35 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 38 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 39 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 40 H 0.09 1.36 7.93 -51.93 -0.41 0.94 16 41 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -34.08 387.92 -9.28 -43.36 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.57 Total: 9.19 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.56 Total: 3.78 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.76 Total: -54.05 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.38 Total: -0.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.08 -9.28 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567303984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.861 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds