Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47107 * 2 1 4 4 C 1.53003 * 109.47224 * 239.99910 * 2 1 3 5 5 N 1.46498 * 109.46990 * 185.00358 * 4 2 1 6 6 C 1.36939 * 119.99705 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00173 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99487 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00130 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47434 * 89.99894 * 10 8 6 12 12 H 1.48502 * 109.46893 * 210.00084 * 10 8 6 13 13 H 1.48501 * 109.47072 * 329.99679 * 10 8 6 14 14 N 1.46500 * 109.47186 * 119.99838 * 2 1 3 15 15 C 1.46502 * 120.00113 * 59.99948 * 14 2 1 16 16 C 1.34780 * 120.00188 * 240.00167 * 14 2 1 17 17 O 1.21285 * 119.99712 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00249 * 179.97438 * 16 14 2 19 19 H 1.09002 * 109.46959 * 59.99905 * 18 16 14 20 20 C 1.52997 * 109.47078 * 299.99993 * 18 16 14 21 21 N 1.46500 * 109.46939 * 179.97438 * 18 16 14 22 22 C 1.34780 * 119.99910 * 205.00060 * 21 18 16 23 23 O 1.21708 * 119.99905 * 0.02562 * 22 21 18 24 24 C 1.46578 * 119.99845 * 180.02562 * 22 21 18 25 25 C 1.36653 * 125.45230 * 179.97438 * 24 22 21 26 26 C 1.37472 * 113.29343 * 180.02562 * 25 24 22 27 27 C 1.33821 * 115.10066 * 359.97438 * 26 25 24 28 28 S 1.70615 * 110.95507 * 359.72621 * 27 26 25 29 29 H 1.08998 * 109.46659 * 60.00444 * 1 2 3 30 30 H 1.09005 * 109.46580 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46781 * 300.00215 * 1 2 3 32 32 H 1.09000 * 109.46886 * 304.99890 * 4 2 1 33 33 H 1.08998 * 109.46962 * 64.99413 * 4 2 1 34 34 H 0.96999 * 120.00297 * 359.97438 * 5 4 2 35 35 H 0.97005 * 119.99743 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46966 * 270.00020 * 15 14 2 37 37 H 1.09001 * 109.47307 * 30.00087 * 15 14 2 38 38 H 1.09000 * 109.47042 * 150.00072 * 15 14 2 39 39 H 1.09002 * 109.47153 * 299.99793 * 20 18 16 40 40 H 1.09001 * 109.46832 * 179.97438 * 20 18 16 41 41 H 1.09004 * 109.47261 * 59.99965 * 20 18 16 42 42 H 0.96994 * 119.99975 * 25.00437 * 21 18 16 43 43 H 1.07998 * 123.35345 * 359.97438 * 25 24 22 44 44 H 1.07999 * 122.45532 * 180.02562 * 26 25 24 45 45 H 1.07998 * 124.52256 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1839 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5674 -1.5373 -2.1518 9 7 6.2219 -1.0431 -1.1224 10 14 6.5001 -2.3721 -3.5382 11 1 6.8619 -1.3654 -4.5681 12 1 7.7358 -2.9946 -2.9989 13 1 5.6442 -3.4203 -4.1498 14 7 2.0184 -0.6906 1.1962 15 6 1.6645 -2.0932 1.4281 16 6 2.7933 -0.0356 2.0834 17 8 3.0866 1.1255 1.8912 18 6 3.2951 -0.7457 3.3142 19 1 3.9005 -1.6024 3.0178 20 6 2.1048 -1.2260 4.1468 21 7 4.1096 0.1749 4.1112 22 6 5.0527 -0.3081 4.9441 23 8 5.2280 -1.5092 5.0338 24 6 5.8672 0.6130 5.7420 25 6 6.8496 0.2466 6.6183 26 6 7.4550 1.3160 7.2345 27 6 6.9866 2.5173 6.8763 28 16 5.7421 2.3667 5.7190 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -1.7198 -1.2951 33 1 1.7516 -0.1584 -2.1370 34 1 3.9825 -0.4623 -0.4318 35 1 7.1887 -1.1121 -1.0838 36 1 0.7376 -2.1443 1.9995 37 1 1.5296 -2.5969 0.4709 38 1 2.4630 -2.5818 1.9865 39 1 1.4994 -0.3694 4.4432 40 1 2.4679 -1.7401 5.0368 41 1 1.4992 -1.9112 3.5536 42 1 3.9701 1.1321 4.0395 43 1 7.1226 -0.7808 6.8085 44 1 8.2510 1.1956 7.9544 45 1 7.3513 3.4570 7.2642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568291060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -12.764024 kcal Electronic energy + Delta-G solvation = -27723.455292 eV Core-core repulsion = 23868.744887 eV Total energy + Delta-G solvation = -3854.710404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46094 -39.31594 -37.60418 -36.51488 -34.97010 -34.04351 -32.34877 -30.86042 -30.02657 -29.22782 -26.88496 -25.66372 -25.36155 -24.20168 -22.63537 -21.71305 -20.50112 -19.65012 -19.00274 -18.64690 -17.08737 -16.78459 -16.50565 -15.86937 -15.69069 -15.26486 -15.01929 -14.85030 -14.51835 -13.87938 -13.77019 -13.59887 -13.31132 -13.25413 -12.93070 -12.91532 -12.55191 -12.50127 -12.37574 -12.28630 -12.17191 -12.12285 -11.67181 -11.48065 -11.38129 -11.10726 -10.84590 -10.74337 -10.49407 -10.09270 -10.03893 -9.68576 -9.56183 -9.19876 -8.96750 -8.85416 -8.74744 -8.34425 -6.89050 -5.71506 -3.01427 0.37944 1.32834 1.73731 2.26693 2.80318 2.85685 3.21470 3.42462 3.45762 3.50076 3.52545 4.50192 4.62051 4.73240 4.83735 5.06281 5.13583 5.17503 5.22898 5.29754 5.31245 5.39041 5.51042 5.55152 5.61333 5.66072 5.75221 5.81453 5.86924 5.99658 6.01260 6.06382 6.12069 6.15604 6.17225 6.31368 6.34786 6.48300 6.69697 6.92069 7.44373 7.61243 7.71694 8.13871 8.37674 8.45592 9.57166 10.15141 10.50089 11.50427 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.003491 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.110645 B = 8018.389756 C = 9633.498813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.101 0.899 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.069 0.931 8 C -0.011 4.011 9 N -0.928 5.928 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.589 5.589 15 C 0.075 3.925 16 C 0.518 3.482 17 O -0.537 6.537 18 C 0.128 3.872 19 H 0.120 0.880 20 C -0.169 4.169 21 N -0.705 5.705 22 C 0.595 3.405 23 O -0.528 6.528 24 C -0.262 4.262 25 C -0.057 4.057 26 C -0.151 4.151 27 C -0.235 4.235 28 S 0.212 5.788 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.029 0.971 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.406 0.594 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 4.657 17.440 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.014 3.986 5 N -0.373 5.373 6 C -0.374 4.374 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.321 5.321 15 C -0.068 4.068 16 C 0.305 3.695 17 O -0.414 6.414 18 C 0.020 3.980 19 H 0.138 0.862 20 C -0.228 4.228 21 N -0.358 5.358 22 C 0.381 3.619 23 O -0.406 6.406 24 C -0.382 4.382 25 C -0.091 4.091 26 C -0.182 4.182 27 C -0.373 4.373 28 S 0.479 5.521 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.243 0.757 43 H 0.172 0.828 44 H 0.162 0.838 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.796 5.379 16.440 19.405 hybrid contribution 1.834 -0.892 0.158 2.046 sum -6.962 4.487 16.598 18.550 Atomic orbital electron populations 1.22047 0.94991 1.02139 1.02064 1.21434 0.93334 0.98536 0.84460 0.88131 1.21008 0.87186 0.96787 0.93569 1.42294 0.99624 1.70183 1.25155 1.19187 0.89415 1.29685 0.99151 0.91290 1.24750 0.96460 1.01578 0.97975 1.69683 1.07181 1.50607 1.30093 0.86217 0.79578 0.78997 0.81531 1.21758 1.21801 1.20803 1.47540 1.50125 1.12256 1.22190 1.21955 0.99994 0.81878 1.03004 1.20344 0.78044 0.86976 0.84180 1.90678 1.57192 1.17055 1.76506 1.20756 0.93877 0.93627 0.89740 0.86211 1.22384 0.97022 1.02249 1.01101 1.45534 1.36807 1.10800 1.42629 1.16867 0.78775 0.87293 0.78946 1.90833 1.68588 1.14641 1.66528 1.24609 1.07465 0.97319 1.08818 1.20803 0.93229 1.01230 0.93824 1.20038 1.03333 0.91061 1.03774 1.25362 1.04122 1.03116 1.04675 1.83241 1.32490 0.99836 1.36540 0.91364 0.92316 0.92652 0.96101 0.95379 0.78021 0.93528 0.92615 0.90092 0.90852 0.92021 0.90944 0.89688 0.75727 0.82824 0.83758 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.20 37.16 0.34 -1.52 16 2 C 0.13 2.07 2.80 -67.93 -0.19 1.88 16 3 H 0.10 1.90 6.90 -51.93 -0.36 1.54 16 4 C 0.14 2.83 5.50 -4.04 -0.02 2.81 16 5 N -0.73 -18.77 5.43 -59.91 -0.33 -19.09 16 6 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -29.07 13.06 55.49 0.72 -28.34 16 10 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.59 -9.36 2.24 -173.92 -0.39 -9.75 16 15 C 0.07 0.96 7.86 59.85 0.47 1.43 16 16 C 0.52 9.04 6.85 -10.98 -0.08 8.96 16 17 O -0.54 -10.95 15.16 5.55 0.08 -10.86 16 18 C 0.13 1.96 2.18 -69.08 -0.15 1.81 16 19 H 0.12 2.07 6.83 -51.93 -0.35 1.71 16 20 C -0.17 -1.94 9.12 37.16 0.34 -1.61 16 21 N -0.70 -10.80 4.95 -56.27 -0.28 -11.08 16 22 C 0.60 9.54 7.75 -12.90 -0.10 9.44 16 23 O -0.53 -9.84 16.50 5.18 0.09 -9.75 16 24 C -0.26 -3.52 6.45 -36.79 -0.24 -3.76 16 25 C -0.06 -0.68 10.01 -40.43 -0.40 -1.09 16 26 C -0.15 -1.43 10.15 -41.41 -0.42 -1.85 16 27 C -0.23 -2.11 10.92 29.18 0.32 -1.79 16 28 S 0.21 2.25 22.16 -107.50 -2.38 -0.13 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.40 6.88 -51.93 -0.36 0.05 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 10.84 7.06 -40.82 -0.29 10.55 16 35 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.06 0.53 6.95 -51.93 -0.36 0.17 16 37 H 0.08 1.10 6.53 -51.93 -0.34 0.76 16 38 H 0.07 0.94 6.01 -51.93 -0.31 0.63 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.83 4.53 -51.93 -0.24 0.59 16 42 H 0.41 5.92 6.90 -40.82 -0.28 5.64 16 43 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -35.62 381.95 -8.34 -43.96 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.21 Total: 14.20 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.38 Total: 7.24 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -0.27 Total: -68.27 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.38 Total: -0.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.62 -8.34 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568291060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.196 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds