Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47107 * 2 1 4 4 C 1.53003 * 109.47224 * 239.99910 * 2 1 3 5 5 N 1.46498 * 109.46990 * 185.00358 * 4 2 1 6 6 C 1.36939 * 119.99705 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00173 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99487 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00130 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47434 * 89.99894 * 10 8 6 12 12 H 1.48502 * 109.46893 * 210.00084 * 10 8 6 13 13 H 1.48501 * 109.47072 * 329.99679 * 10 8 6 14 14 N 1.46500 * 109.47186 * 119.99838 * 2 1 3 15 15 C 1.46502 * 120.00113 * 59.99948 * 14 2 1 16 16 C 1.34780 * 120.00188 * 240.00167 * 14 2 1 17 17 O 1.21285 * 119.99712 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00249 * 179.97438 * 16 14 2 19 19 H 1.09002 * 109.46959 * 59.99905 * 18 16 14 20 20 C 1.52997 * 109.47078 * 299.99993 * 18 16 14 21 21 N 1.46500 * 109.46939 * 179.97438 * 18 16 14 22 22 C 1.34780 * 119.99910 * 205.00060 * 21 18 16 23 23 O 1.21708 * 119.99905 * 0.02562 * 22 21 18 24 24 C 1.46578 * 119.99845 * 180.02562 * 22 21 18 25 25 C 1.36653 * 125.45230 * 179.97438 * 24 22 21 26 26 C 1.37472 * 113.29343 * 180.02562 * 25 24 22 27 27 C 1.33821 * 115.10066 * 359.97438 * 26 25 24 28 28 S 1.70615 * 110.95507 * 359.72621 * 27 26 25 29 29 H 1.08998 * 109.46659 * 60.00444 * 1 2 3 30 30 H 1.09005 * 109.46580 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46781 * 300.00215 * 1 2 3 32 32 H 1.09000 * 109.46886 * 304.99890 * 4 2 1 33 33 H 1.08998 * 109.46962 * 64.99413 * 4 2 1 34 34 H 0.96999 * 120.00297 * 359.97438 * 5 4 2 35 35 H 0.97005 * 119.99743 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46966 * 270.00020 * 15 14 2 37 37 H 1.09001 * 109.47307 * 30.00087 * 15 14 2 38 38 H 1.09000 * 109.47042 * 150.00072 * 15 14 2 39 39 H 1.09002 * 109.47153 * 299.99793 * 20 18 16 40 40 H 1.09001 * 109.46832 * 179.97438 * 20 18 16 41 41 H 1.09004 * 109.47261 * 59.99965 * 20 18 16 42 42 H 0.96994 * 119.99975 * 25.00437 * 21 18 16 43 43 H 1.07998 * 123.35345 * 359.97438 * 25 24 22 44 44 H 1.07999 * 122.45532 * 180.02562 * 26 25 24 45 45 H 1.07998 * 124.52256 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1839 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5674 -1.5373 -2.1518 9 7 6.2219 -1.0431 -1.1224 10 14 6.5001 -2.3721 -3.5382 11 1 6.8619 -1.3654 -4.5681 12 1 7.7358 -2.9946 -2.9989 13 1 5.6442 -3.4203 -4.1498 14 7 2.0184 -0.6906 1.1962 15 6 1.6645 -2.0932 1.4281 16 6 2.7933 -0.0356 2.0834 17 8 3.0866 1.1255 1.8912 18 6 3.2951 -0.7457 3.3142 19 1 3.9005 -1.6024 3.0178 20 6 2.1048 -1.2260 4.1468 21 7 4.1096 0.1749 4.1112 22 6 5.0527 -0.3081 4.9441 23 8 5.2280 -1.5092 5.0338 24 6 5.8672 0.6130 5.7420 25 6 6.8496 0.2466 6.6183 26 6 7.4550 1.3160 7.2345 27 6 6.9866 2.5173 6.8763 28 16 5.7421 2.3667 5.7190 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -1.7198 -1.2951 33 1 1.7516 -0.1584 -2.1370 34 1 3.9825 -0.4623 -0.4318 35 1 7.1887 -1.1121 -1.0838 36 1 0.7376 -2.1443 1.9995 37 1 1.5296 -2.5969 0.4709 38 1 2.4630 -2.5818 1.9865 39 1 1.4994 -0.3694 4.4432 40 1 2.4679 -1.7401 5.0368 41 1 1.4992 -1.9112 3.5536 42 1 3.9701 1.1321 4.0395 43 1 7.1226 -0.7808 6.8085 44 1 8.2510 1.1956 7.9544 45 1 7.3513 3.4570 7.2642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568291060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = -38.145580 kcal Electronic energy + Delta-G solvation = -27724.555919 eV Core-core repulsion = 23868.744887 eV Total energy + Delta-G solvation = -3855.811031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74518 -40.55232 -38.52006 -37.94621 -36.27012 -35.85658 -33.86735 -32.38891 -31.44402 -30.19818 -28.03654 -27.39979 -26.33611 -25.32348 -24.44822 -22.92616 -21.78708 -20.75951 -20.06236 -19.81214 -19.12533 -18.09993 -17.64886 -17.10696 -16.83038 -16.58581 -16.51711 -16.17475 -15.87804 -15.33541 -15.26145 -14.88516 -14.82501 -14.42738 -13.98403 -13.88627 -13.74001 -13.70504 -13.56207 -13.48174 -13.27728 -13.23052 -13.08336 -12.83480 -12.79702 -12.53909 -12.38275 -12.16012 -11.94657 -11.81585 -11.73821 -11.33996 -11.00325 -10.88356 -10.42466 -9.88854 -9.62974 -9.57596 -9.01613 -7.95658 -5.25463 -0.53021 0.45587 0.92316 1.35611 1.43638 1.45994 1.48358 1.54467 1.64373 2.09949 2.22063 2.53876 3.28120 3.38029 3.68071 3.85502 3.96702 4.03839 4.10033 4.12393 4.22528 4.31984 4.33433 4.46895 4.52628 4.55032 4.69781 4.76041 4.77921 4.86415 4.93310 4.98051 5.00030 5.12748 5.16124 5.17260 5.19200 5.33216 5.34806 5.46302 5.60520 6.23572 6.24765 6.32280 6.92440 7.04184 7.30569 8.07780 8.29731 9.27277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.003491 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.110645 B = 8018.389756 C = 9633.498813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 H 0.070 0.930 4 C 0.139 3.861 5 N -0.743 5.743 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.078 4.078 9 N -0.971 5.971 10 Si 0.974 3.026 11 H -0.288 1.288 12 H -0.299 1.299 13 H -0.264 1.264 14 N -0.587 5.587 15 C 0.068 3.932 16 C 0.510 3.490 17 O -0.576 6.576 18 C 0.130 3.870 19 H 0.095 0.905 20 C -0.156 4.156 21 N -0.705 5.705 22 C 0.590 3.410 23 O -0.567 6.567 24 C -0.306 4.306 25 C -0.054 4.054 26 C -0.158 4.158 27 C -0.214 4.214 28 S 0.218 5.782 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.370 0.630 35 H 0.247 0.753 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.408 0.592 43 H 0.151 0.849 44 H 0.175 0.825 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 4.724 17.945 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 H 0.089 0.911 4 C 0.012 3.988 5 N -0.385 5.385 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.621 5.621 10 Si 0.803 3.197 11 H -0.216 1.216 12 H -0.226 1.226 13 H -0.188 1.188 14 N -0.318 5.318 15 C -0.074 4.074 16 C 0.298 3.702 17 O -0.456 6.456 18 C 0.021 3.979 19 H 0.112 0.888 20 C -0.214 4.214 21 N -0.357 5.357 22 C 0.379 3.621 23 O -0.448 6.448 24 C -0.426 4.426 25 C -0.089 4.089 26 C -0.188 4.188 27 C -0.352 4.352 28 S 0.485 5.515 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.246 0.754 43 H 0.169 0.831 44 H 0.192 0.808 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.321 5.429 16.910 20.541 hybrid contribution 2.252 -0.852 -0.007 2.408 sum -8.069 4.576 16.903 19.281 Atomic orbital electron populations 1.21960 0.90787 1.03853 1.03298 1.21343 0.96340 0.96384 0.83280 0.91149 1.21257 0.83970 0.98079 0.95481 1.42532 1.02107 1.69832 1.24064 1.19655 0.89871 1.28264 0.99568 0.90193 1.25604 0.97634 1.03195 1.00526 1.69879 1.06783 1.52986 1.32500 0.85131 0.77903 0.78199 0.78478 1.21573 1.22633 1.18834 1.47659 1.49410 1.13352 1.21408 1.22211 1.01892 0.79831 1.03440 1.20735 0.77820 0.86721 0.84937 1.90647 1.58676 1.18789 1.77498 1.20782 0.94831 0.92464 0.89786 0.88752 1.22325 0.95565 1.02998 1.00529 1.45593 1.36854 1.10955 1.42327 1.17288 0.78658 0.87340 0.78846 1.90787 1.69788 1.16240 1.68004 1.24516 1.08900 0.98721 1.10452 1.21064 0.92596 1.02091 0.93162 1.20283 1.03994 0.90285 1.04243 1.25827 1.02231 1.04425 1.02685 1.83208 1.33407 0.97587 1.37273 0.90174 0.90278 0.91446 0.94259 0.95044 0.79875 0.94404 0.88129 0.90553 0.91317 0.90760 0.91153 0.87524 0.75433 0.83138 0.80767 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.20 71.98 0.66 -2.33 16 2 C 0.13 4.20 2.80 44.99 0.13 4.33 16 3 H 0.07 2.72 6.90 -2.39 -0.02 2.71 16 4 C 0.14 5.40 5.50 86.38 0.48 5.88 16 5 N -0.74 -38.83 5.43 -343.45 -1.87 -40.70 16 6 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 7 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 8 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 9 N -0.97 -62.87 13.06 21.65 0.28 -62.59 16 10 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 N -0.59 -18.44 2.24 -822.56 -1.85 -20.29 16 15 C 0.07 1.63 7.86 127.77 1.00 2.63 16 16 C 0.51 18.33 6.85 87.66 0.60 18.93 16 17 O -0.58 -24.59 15.16 -3.05 -0.05 -24.63 16 18 C 0.13 4.13 2.18 44.24 0.10 4.23 16 19 H 0.09 3.50 6.83 -2.39 -0.02 3.48 16 20 C -0.16 -3.48 9.12 71.98 0.66 -2.83 16 21 N -0.70 -22.87 4.95 -450.16 -2.23 -25.10 16 22 C 0.59 20.12 7.75 86.42 0.67 20.79 16 23 O -0.57 -22.55 16.50 -4.38 -0.07 -22.63 16 24 C -0.31 -8.51 6.45 24.08 0.16 -8.36 16 25 C -0.05 -1.30 10.01 21.72 0.22 -1.08 16 26 C -0.16 -2.70 10.15 21.08 0.21 -2.49 16 27 C -0.21 -3.32 10.92 66.82 0.73 -2.59 16 28 S 0.22 4.55 22.16 -56.49 -1.25 3.29 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.39 7.67 -2.38 -0.02 1.37 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.42 6.88 -2.39 -0.02 1.40 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.37 21.55 7.06 -92.71 -0.65 20.89 16 35 H 0.25 15.67 8.31 -92.70 -0.77 14.90 16 36 H 0.10 1.54 6.95 -2.38 -0.02 1.52 16 37 H 0.08 1.92 6.53 -2.39 -0.02 1.91 16 38 H 0.07 1.73 6.01 -2.39 -0.01 1.72 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.85 4.53 -2.38 -0.01 1.84 16 42 H 0.41 12.65 6.90 -92.71 -0.64 12.01 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -81.08 381.95 1.65 -79.43 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -0.26 Total: 43.53 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 6.91 Total: 20.03 kcal Atomic # 7 Polarization: -143.02 SS G_CDS: -5.66 Total: -148.68 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.12 Total: -47.26 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.25 Total: 3.29 kcal Total: -81.08 1.65 -79.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568291060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.283 kcal (2) G-P(sol) polarization free energy of solvation -81.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds