Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47367 * 316.98256 * 3 2 1 5 5 C 1.34777 * 120.00220 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99652 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00133 * 179.97438 * 5 4 3 8 8 H 1.08995 * 109.47059 * 300.00545 * 7 5 4 9 9 C 1.53000 * 109.46634 * 60.00564 * 7 5 4 10 10 N 1.46900 * 109.47138 * 180.02562 * 7 5 4 11 11 C 1.47482 * 110.99828 * 166.62930 * 10 7 5 12 12 C 1.53515 * 87.92996 * 221.29869 * 11 10 7 13 13 N 1.46503 * 114.17122 * 272.37583 * 12 11 10 14 14 C 1.46501 * 119.99494 * 33.84504 * 13 12 11 15 15 C 1.34775 * 120.00128 * 213.83984 * 13 12 11 16 16 O 1.21282 * 119.99627 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99896 * 179.97438 * 15 13 12 18 18 S 1.81000 * 109.46891 * 180.02562 * 17 15 13 19 19 C 1.76207 * 99.99903 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99926 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99798 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46831 * 60.00613 * 23 21 19 25 25 H 1.48501 * 109.46817 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47225 * 300.00457 * 23 21 19 27 27 C 1.47478 * 110.99916 * 70.65844 * 10 7 5 28 28 H 4.40642 * 5.51340 * 179.97438 * 4 1 2 29 29 H 1.09006 * 109.47104 * 196.98420 * 3 2 1 30 30 H 1.09003 * 109.47561 * 76.98398 * 3 2 1 31 31 H 0.97000 * 119.99546 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47187 * 182.13661 * 9 7 5 33 33 H 1.08998 * 109.47224 * 302.13281 * 9 7 5 34 34 H 1.08999 * 109.47533 * 62.14094 * 9 7 5 35 35 H 1.08999 * 113.47499 * 336.06199 * 11 10 7 36 36 H 1.09001 * 113.47600 * 106.53240 * 11 10 7 37 37 H 1.09000 * 114.34374 * 139.68287 * 12 11 10 38 38 H 1.08997 * 109.47221 * 90.00143 * 14 13 12 39 39 H 1.09005 * 109.46487 * 209.99653 * 14 13 12 40 40 H 1.08996 * 109.47314 * 329.99735 * 14 13 12 41 41 H 1.08996 * 109.47345 * 300.00547 * 17 15 13 42 42 H 1.09003 * 109.46902 * 60.00464 * 17 15 13 43 43 H 0.96999 * 119.99557 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.48187 * 253.47294 * 27 10 7 45 45 H 1.09001 * 113.47702 * 23.87551 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0090 0.9423 5 6 4.4600 -1.1888 1.1099 6 8 5.2478 -0.5144 0.4810 7 6 4.9628 -2.2270 2.0797 8 1 4.5998 -1.9951 3.0809 9 6 4.4529 -3.6069 1.6592 10 7 6.4318 -2.2264 2.0796 11 6 6.9607 -2.9879 3.2265 12 6 8.0164 -1.8869 3.3994 13 7 9.2308 -2.0902 2.6054 14 6 9.1465 -2.7249 1.2877 15 6 10.4252 -1.6932 3.0871 16 8 10.4948 -1.1681 4.1782 17 6 11.6744 -1.9029 2.2706 18 16 13.1043 -1.2700 3.1822 19 6 14.3869 -1.6329 2.0298 20 1 14.1497 -2.1105 1.0906 21 6 15.7019 -1.3050 2.3290 22 7 15.9910 -0.7233 3.4739 23 14 17.0617 -1.6904 1.1076 24 1 16.7963 -0.9796 -0.1690 25 1 18.3654 -1.2443 1.6613 26 1 17.1043 -3.1539 0.8598 27 6 6.9599 -1.0062 2.7177 28 1 -1.0498 -0.0001 0.0003 29 1 3.0089 0.9837 0.3002 30 1 3.0095 -0.2306 -1.0013 31 1 2.5047 -1.5486 1.4450 32 1 4.7849 -4.3526 2.3815 33 1 3.3636 -3.5961 1.6228 34 1 4.8469 -3.8551 0.6737 35 1 6.2633 -3.0556 4.0614 36 1 7.3823 -3.9540 2.9491 37 1 8.2200 -1.6183 4.4360 38 1 8.9952 -1.9608 0.5253 39 1 10.0723 -3.2631 1.0839 40 1 8.3097 -3.4231 1.2735 41 1 11.8085 -2.9674 2.0785 42 1 11.5827 -1.3714 1.3234 43 1 16.9101 -0.4945 3.6832 44 1 7.3807 -0.2928 2.0092 45 1 6.2618 -0.5446 3.4161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569483320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = 42.210853 kcal Electronic energy + Delta-G solvation = -26416.091327 eV Core-core repulsion = 22563.764813 eV Total energy + Delta-G solvation = -3852.326515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32858 -39.79361 -38.44082 -35.90264 -34.88047 -33.45437 -32.47303 -32.37897 -29.33525 -27.79951 -27.34137 -26.65246 -25.61171 -25.38107 -23.52145 -20.88330 -20.66193 -19.21801 -18.55229 -17.69444 -17.44444 -17.02372 -16.62274 -16.14618 -15.90843 -15.43056 -15.24885 -14.97032 -14.75795 -14.60871 -14.13957 -13.83938 -13.63462 -13.37462 -13.32871 -12.98214 -12.74374 -12.56203 -12.51465 -12.35795 -12.00328 -11.88619 -11.80019 -11.39152 -11.21454 -11.04845 -11.00148 -10.99198 -10.94233 -10.71433 -10.04242 -9.76457 -9.57430 -9.37179 -9.11623 -9.01031 -8.39929 -8.17289 -6.44513 -6.16689 -3.86854 1.82215 2.17178 2.27313 2.91138 2.96322 3.08194 3.27457 3.29462 3.32839 3.61746 3.68780 3.72098 4.15142 4.25395 4.35639 4.52974 4.57585 4.59455 4.97241 4.99944 5.03337 5.03814 5.10792 5.17916 5.18320 5.27479 5.28649 5.38852 5.42932 5.61044 5.62320 5.73009 5.74634 5.83700 5.86514 5.99827 6.03315 6.07028 6.22946 6.58098 6.77022 6.91756 7.00206 7.63758 7.65763 7.80044 8.40167 8.62157 9.28507 10.90698 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.001901 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.336443 B =14725.161484 C =15074.824582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.210 4.210 3 C 0.231 3.769 4 N -0.733 5.733 5 C 0.520 3.480 6 O -0.511 6.511 7 C 0.028 3.972 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.443 5.443 11 C -0.013 4.013 12 C 0.123 3.877 13 N -0.598 5.598 14 C 0.086 3.914 15 C 0.536 3.464 16 O -0.519 6.519 17 C -0.148 4.148 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.007 4.007 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.402 0.598 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.614 -5.406 -4.646 33.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.210 4.210 3 C 0.109 3.891 4 N -0.388 5.388 5 C 0.306 3.694 6 O -0.384 6.384 7 C -0.084 4.084 8 H 0.093 0.907 9 C -0.197 4.197 10 N -0.166 5.166 11 C -0.143 4.143 12 C 0.017 3.983 13 N -0.333 5.333 14 C -0.057 4.057 15 C 0.324 3.676 16 O -0.393 6.393 17 C -0.298 4.298 18 S 0.164 5.836 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.137 4.137 28 H 0.239 0.761 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.236 0.764 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -31.575 -4.227 -4.101 32.120 hybrid contribution -0.339 -0.858 -1.183 1.500 sum -31.914 -5.085 -5.284 32.746 Atomic orbital electron populations 1.25056 0.95973 0.98770 0.99021 1.22929 0.94261 1.01987 1.01854 1.18054 0.83052 0.93305 0.94714 1.45987 1.07340 1.40289 1.45150 1.20470 0.81591 0.83984 0.83389 1.90767 1.54875 1.46364 1.46403 1.22263 0.92572 0.95764 0.97799 0.90724 1.21730 1.00478 0.94041 1.03443 1.69080 1.05062 1.07345 1.35157 1.24346 0.96861 0.99926 0.93139 1.21890 0.84346 0.95194 0.96872 1.47424 1.05248 1.61590 1.19022 1.21762 1.02542 0.98058 0.83293 1.20369 0.83754 0.77022 0.86427 1.90681 1.85856 1.41699 1.21075 1.23546 0.97843 1.05133 1.03325 1.85361 0.94139 1.78778 1.25291 1.22831 0.93523 1.46367 1.05564 0.90974 1.24981 0.98018 0.94630 0.95909 1.70015 1.19935 1.38662 1.21737 0.86232 0.79940 0.78828 0.80547 1.19942 1.20845 1.19957 1.24288 0.96649 0.94920 0.97871 0.76105 0.88978 0.88929 0.76360 0.91151 0.91893 0.90928 0.90148 0.88680 0.86653 0.92623 0.91427 0.90233 0.89182 0.89149 0.92187 0.88453 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 19.25 29.55 0.57 -0.23 16 2 C -0.21 -1.28 13.46 -37.13 -0.50 -1.78 16 3 C 0.23 1.53 6.15 -6.83 -0.04 1.49 16 4 N -0.73 -4.67 5.42 -63.16 -0.34 -5.01 16 5 C 0.52 4.75 6.96 -10.99 -0.08 4.68 16 6 O -0.51 -6.89 15.51 5.56 0.09 -6.81 16 7 C 0.03 0.21 2.07 -68.86 -0.14 0.06 16 8 H 0.08 0.42 7.56 -51.93 -0.39 0.03 16 9 C -0.14 -0.73 9.18 37.16 0.34 -0.39 16 10 N -0.44 -4.30 4.39 -238.01 -1.05 -5.35 16 11 C -0.01 -0.11 6.02 -7.54 -0.05 -0.16 16 12 C 0.12 1.53 4.67 -67.72 -0.32 1.21 16 13 N -0.60 -8.98 3.11 -173.62 -0.54 -9.53 16 14 C 0.09 1.08 9.33 59.85 0.56 1.64 16 15 C 0.54 10.55 7.69 -10.99 -0.08 10.47 16 16 O -0.52 -12.02 15.37 5.56 0.09 -11.94 16 17 C -0.15 -3.12 4.71 36.00 0.17 -2.95 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 23 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.01 -0.08 6.15 -7.55 -0.05 -0.13 16 28 H 0.22 0.29 7.80 -54.10 -0.42 -0.13 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 1.60 7.84 -40.82 -0.32 1.28 16 32 H 0.07 0.32 7.70 -51.93 -0.40 -0.08 16 33 H 0.06 0.21 7.50 -51.93 -0.39 -0.18 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.52 7.71 -51.93 -0.40 0.12 16 36 H 0.09 0.82 7.25 -51.93 -0.38 0.44 16 37 H 0.12 1.56 7.28 -51.93 -0.38 1.18 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 40 H 0.08 0.86 5.68 -51.93 -0.29 0.56 16 41 H 0.09 1.75 7.40 -51.92 -0.38 1.37 16 42 H 0.09 1.81 8.11 -51.92 -0.42 1.39 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.10 1.39 8.03 -51.93 -0.42 0.97 16 45 H 0.07 0.71 7.76 -51.93 -0.40 0.31 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -37.23 391.86 -8.34 -45.57 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.57 Total: -0.60 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 0.58 Total: 0.76 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.19 Total: -45.64 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.23 -8.34 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.781 kcal (2) G-P(sol) polarization free energy of solvation -37.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds