Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47367 * 316.98256 * 3 2 1 5 5 C 1.34777 * 120.00220 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99652 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00133 * 179.97438 * 5 4 3 8 8 H 1.08995 * 109.47059 * 300.00545 * 7 5 4 9 9 C 1.53000 * 109.46634 * 60.00564 * 7 5 4 10 10 N 1.46900 * 109.47138 * 180.02562 * 7 5 4 11 11 C 1.47482 * 110.99828 * 166.62930 * 10 7 5 12 12 C 1.53515 * 87.92996 * 221.29869 * 11 10 7 13 13 N 1.46503 * 114.17122 * 272.37583 * 12 11 10 14 14 C 1.46501 * 119.99494 * 33.84504 * 13 12 11 15 15 C 1.34775 * 120.00128 * 213.83984 * 13 12 11 16 16 O 1.21282 * 119.99627 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99896 * 179.97438 * 15 13 12 18 18 S 1.81000 * 109.46891 * 180.02562 * 17 15 13 19 19 C 1.76207 * 99.99903 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99926 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99798 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46831 * 60.00613 * 23 21 19 25 25 H 1.48501 * 109.46817 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47225 * 300.00457 * 23 21 19 27 27 C 1.47478 * 110.99916 * 70.65844 * 10 7 5 28 28 H 4.40642 * 5.51340 * 179.97438 * 4 1 2 29 29 H 1.09006 * 109.47104 * 196.98420 * 3 2 1 30 30 H 1.09003 * 109.47561 * 76.98398 * 3 2 1 31 31 H 0.97000 * 119.99546 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47187 * 182.13661 * 9 7 5 33 33 H 1.08998 * 109.47224 * 302.13281 * 9 7 5 34 34 H 1.08999 * 109.47533 * 62.14094 * 9 7 5 35 35 H 1.08999 * 113.47499 * 336.06199 * 11 10 7 36 36 H 1.09001 * 113.47600 * 106.53240 * 11 10 7 37 37 H 1.09000 * 114.34374 * 139.68287 * 12 11 10 38 38 H 1.08997 * 109.47221 * 90.00143 * 14 13 12 39 39 H 1.09005 * 109.46487 * 209.99653 * 14 13 12 40 40 H 1.08996 * 109.47314 * 329.99735 * 14 13 12 41 41 H 1.08996 * 109.47345 * 300.00547 * 17 15 13 42 42 H 1.09003 * 109.46902 * 60.00464 * 17 15 13 43 43 H 0.96999 * 119.99557 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.48187 * 253.47294 * 27 10 7 45 45 H 1.09001 * 113.47702 * 23.87551 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0090 0.9423 5 6 4.4600 -1.1888 1.1099 6 8 5.2478 -0.5144 0.4810 7 6 4.9628 -2.2270 2.0797 8 1 4.5998 -1.9951 3.0809 9 6 4.4529 -3.6069 1.6592 10 7 6.4318 -2.2264 2.0796 11 6 6.9607 -2.9879 3.2265 12 6 8.0164 -1.8869 3.3994 13 7 9.2308 -2.0902 2.6054 14 6 9.1465 -2.7249 1.2877 15 6 10.4252 -1.6932 3.0871 16 8 10.4948 -1.1681 4.1782 17 6 11.6744 -1.9029 2.2706 18 16 13.1043 -1.2700 3.1822 19 6 14.3869 -1.6329 2.0298 20 1 14.1497 -2.1105 1.0906 21 6 15.7019 -1.3050 2.3290 22 7 15.9910 -0.7233 3.4739 23 14 17.0617 -1.6904 1.1076 24 1 16.7963 -0.9796 -0.1690 25 1 18.3654 -1.2443 1.6613 26 1 17.1043 -3.1539 0.8598 27 6 6.9599 -1.0062 2.7177 28 1 -1.0498 -0.0001 0.0003 29 1 3.0089 0.9837 0.3002 30 1 3.0095 -0.2306 -1.0013 31 1 2.5047 -1.5486 1.4450 32 1 4.7849 -4.3526 2.3815 33 1 3.3636 -3.5961 1.6228 34 1 4.8469 -3.8551 0.6737 35 1 6.2633 -3.0556 4.0614 36 1 7.3823 -3.9540 2.9491 37 1 8.2200 -1.6183 4.4360 38 1 8.9952 -1.9608 0.5253 39 1 10.0723 -3.2631 1.0839 40 1 8.3097 -3.4231 1.2735 41 1 11.8085 -2.9674 2.0785 42 1 11.5827 -1.3714 1.3234 43 1 16.9101 -0.4945 3.6832 44 1 7.3807 -0.2928 2.0092 45 1 6.2618 -0.5446 3.4161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569483320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = 13.846911 kcal Electronic energy + Delta-G solvation = -26417.321280 eV Core-core repulsion = 22563.764813 eV Total energy + Delta-G solvation = -3853.556467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19088 -40.75868 -39.66897 -36.53333 -36.06037 -34.57800 -34.14227 -33.07621 -30.82255 -28.55096 -28.14703 -27.71053 -27.45807 -26.47630 -24.20736 -22.05804 -21.32086 -19.98369 -19.70851 -19.39015 -18.30147 -17.97894 -17.54449 -17.08707 -16.87119 -16.83556 -16.66348 -16.12741 -16.09489 -15.49084 -15.35409 -14.78823 -14.55978 -14.49490 -14.33750 -14.25072 -13.85264 -13.54534 -13.40578 -13.26752 -13.22503 -13.15050 -12.90533 -12.86264 -12.62889 -12.48360 -12.10861 -11.89423 -11.77152 -11.69097 -11.49161 -11.12206 -10.93682 -10.73831 -10.27581 -10.18499 -9.88655 -9.63649 -8.66631 -8.33704 -6.12197 1.25155 1.36925 1.44557 1.45261 1.53589 1.56054 1.56331 1.80504 2.07840 2.28311 2.39530 2.93532 3.00122 3.26940 3.32424 3.45582 3.59201 3.75914 3.81349 3.95426 4.08433 4.21438 4.28597 4.32624 4.40741 4.45680 4.49239 4.51450 4.59088 4.69792 4.81322 4.81690 4.87949 4.88958 4.97940 5.05828 5.12513 5.26410 5.32373 5.42132 5.61276 5.88152 6.20335 6.30430 6.46606 6.54735 7.07150 7.12999 7.17928 8.75354 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.001901 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.336443 B =14725.161484 C =15074.824582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.248 4.248 3 C 0.233 3.767 4 N -0.717 5.717 5 C 0.517 3.483 6 O -0.564 6.564 7 C 0.029 3.971 8 H 0.102 0.898 9 C -0.134 4.134 10 N -0.456 5.456 11 C 0.009 3.991 12 C 0.102 3.898 13 N -0.585 5.585 14 C 0.086 3.914 15 C 0.534 3.466 16 O -0.564 6.564 17 C -0.123 4.123 18 S -0.148 6.148 19 C -0.549 4.549 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.001 3.999 28 H 0.254 0.746 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.416 0.584 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.271 0.729 44 H 0.061 0.939 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.228 -7.573 -5.737 36.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.249 4.249 3 C 0.110 3.890 4 N -0.371 5.371 5 C 0.304 3.696 6 O -0.441 6.441 7 C -0.083 4.083 8 H 0.119 0.881 9 C -0.191 4.191 10 N -0.180 5.180 11 C -0.120 4.120 12 C -0.003 4.003 13 N -0.317 5.317 14 C -0.056 4.056 15 C 0.322 3.678 16 O -0.442 6.442 17 C -0.274 4.274 18 S 0.079 5.921 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.129 4.129 28 H 0.270 0.730 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.253 0.747 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -34.285 -6.435 -5.207 35.271 hybrid contribution 0.221 -0.170 -0.876 0.919 sum -34.064 -6.605 -6.082 35.227 Atomic orbital electron populations 1.25859 0.96684 0.96771 0.97022 1.22943 0.94403 1.03831 1.03698 1.17910 0.83954 0.92868 0.94277 1.45869 1.06848 1.39846 1.44567 1.20906 0.81898 0.83742 0.83096 1.90754 1.56265 1.48462 1.48612 1.22378 0.90935 0.96401 0.98538 0.88096 1.21738 1.01871 0.92666 1.02852 1.69021 1.07126 1.06212 1.35597 1.24297 0.95373 0.98555 0.93795 1.22158 0.83997 0.98371 0.95795 1.47370 1.04673 1.59899 1.19795 1.21914 1.03852 0.98168 0.81647 1.20123 0.84733 0.77198 0.85762 1.90660 1.86582 1.44130 1.22845 1.23366 0.95569 1.05845 1.02612 1.85511 0.98154 1.80171 1.28292 1.23172 0.94046 1.46619 1.05788 0.90029 1.26123 1.00858 0.94040 0.97989 1.70180 1.20676 1.39818 1.24007 0.85004 0.76044 0.79233 0.77713 1.18839 1.20238 1.18529 1.24131 0.96653 0.94870 0.97224 0.73021 0.90012 0.89830 0.74697 0.89700 0.89604 0.92509 0.86895 0.87775 0.88144 0.93157 0.90881 0.87815 0.87201 0.88095 0.91966 0.91992 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 19.25 74.32 1.43 0.42 16 2 C -0.25 -2.72 13.46 31.12 0.42 -2.30 16 3 C 0.23 3.07 6.15 84.57 0.52 3.59 16 4 N -0.72 -8.21 5.42 -472.12 -2.56 -10.77 16 5 C 0.52 8.92 6.96 87.66 0.61 9.53 16 6 O -0.56 -15.52 15.51 -3.03 -0.05 -15.57 16 7 C 0.03 0.35 2.07 44.17 0.09 0.44 16 8 H 0.10 0.72 7.56 -2.39 -0.02 0.70 16 9 C -0.13 -0.92 9.18 71.98 0.66 -0.26 16 10 N -0.46 -7.95 4.39 -906.92 -3.98 -11.94 16 11 C 0.01 0.13 6.02 83.58 0.50 0.63 16 12 C 0.10 2.46 4.67 45.45 0.21 2.68 16 13 N -0.59 -17.39 3.11 -821.59 -2.56 -19.95 16 14 C 0.09 2.04 9.33 127.77 1.19 3.23 16 15 C 0.53 21.47 7.69 87.66 0.67 22.14 16 16 O -0.56 -27.26 15.37 -3.03 -0.05 -27.31 16 17 C -0.12 -5.25 4.71 71.24 0.34 -4.91 16 18 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 19 C -0.55 -32.20 9.50 67.95 0.65 -31.56 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.86 5.49 84.86 0.47 1.32 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 23 Si 1.00 44.47 29.55 68.60 2.03 46.50 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 C 0.00 0.03 6.15 83.58 0.51 0.54 16 28 H 0.25 -0.26 7.80 -4.43 -0.03 -0.30 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.42 2.30 7.84 -92.71 -0.73 1.57 16 32 H 0.08 0.39 7.70 -2.39 -0.02 0.37 16 33 H 0.09 0.21 7.50 -2.39 -0.02 0.20 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.11 0.95 7.71 -2.39 -0.02 0.94 16 36 H 0.10 1.39 7.25 -2.39 -0.02 1.38 16 37 H 0.10 2.75 7.28 -2.39 -0.02 2.73 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.66 6.44 -2.38 -0.02 1.65 16 40 H 0.10 1.98 5.68 -2.39 -0.01 1.97 16 41 H 0.11 4.22 7.40 -2.40 -0.02 4.20 16 42 H 0.10 4.07 8.11 -2.39 -0.02 4.05 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.06 1.84 8.03 -2.39 -0.02 1.82 16 45 H 0.09 1.65 7.76 -2.39 -0.02 1.64 16 Total: -1.00 -85.79 391.86 0.51 -85.28 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.28 Total: 14.51 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 8.28 Total: 5.50 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -8.81 Total: -99.21 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.09 Total: -42.88 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -85.79 0.51 -85.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.125 kcal (2) G-P(sol) polarization free energy of solvation -85.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds