Wall clock time and date at job start Sat Apr 11 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47521 * 67.49195 * 3 2 1 5 5 C 1.34777 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 3 8 8 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 9 9 C 1.52996 * 109.46842 * 299.72137 * 7 5 4 10 10 N 1.46902 * 109.47027 * 179.72353 * 7 5 4 11 11 C 1.47479 * 110.99603 * 275.97016 * 10 7 5 12 12 C 1.53514 * 87.92939 * 221.29709 * 11 10 7 13 13 N 1.46499 * 114.17118 * 272.37823 * 12 11 10 14 14 C 1.46500 * 120.00022 * 33.83716 * 13 12 11 15 15 C 1.34776 * 120.00175 * 213.84472 * 13 12 11 16 16 O 1.21278 * 120.00076 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.00125 * 180.02562 * 15 13 12 18 18 S 1.80998 * 109.47113 * 179.97438 * 17 15 13 19 19 C 1.76199 * 99.99979 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99960 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99834 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99977 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47333 * 89.99817 * 23 21 19 25 25 H 1.48504 * 109.46822 * 209.99648 * 23 21 19 26 26 H 1.48496 * 109.46752 * 329.99552 * 23 21 19 27 27 C 1.47478 * 110.99765 * 179.97438 * 10 7 5 28 28 H 4.40642 * 5.51406 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47441 * 307.48741 * 3 2 1 30 30 H 1.09002 * 109.47191 * 187.49157 * 3 2 1 31 31 H 0.97000 * 119.99484 * 359.97438 * 4 3 2 32 32 H 1.09003 * 109.47307 * 180.02562 * 9 7 5 33 33 H 1.09002 * 109.47575 * 299.99754 * 9 7 5 34 34 H 1.09001 * 109.47551 * 59.99933 * 9 7 5 35 35 H 1.09003 * 113.47830 * 336.06166 * 11 10 7 36 36 H 1.09001 * 113.47695 * 106.53290 * 11 10 7 37 37 H 1.08997 * 114.17078 * 139.67073 * 12 11 10 38 38 H 1.09010 * 109.46755 * 90.00429 * 14 13 12 39 39 H 1.08996 * 109.47404 * 209.99795 * 14 13 12 40 40 H 1.08996 * 109.47326 * 330.00726 * 14 13 12 41 41 H 1.09002 * 109.46732 * 299.99521 * 17 15 13 42 42 H 1.09003 * 109.47102 * 59.99374 * 17 15 13 43 43 H 0.97000 * 119.99440 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.47375 * 253.46734 * 27 10 7 45 45 H 1.09004 * 113.47700 * 23.87607 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5279 -1.2760 5 6 4.4598 -0.6220 -1.5032 6 8 5.2477 -0.2687 -0.6515 7 6 4.9624 -1.1599 -2.8182 8 1 4.5959 -0.5331 -3.6311 9 6 4.4571 -2.5912 -3.0102 10 7 6.4314 -1.1548 -2.8200 11 6 6.9548 0.1682 -3.2082 12 6 8.0125 -0.5591 -4.0502 13 7 9.2288 -0.9099 -3.3128 14 6 9.1475 -1.2723 -1.8957 15 6 10.4227 -0.8989 -3.9381 16 8 10.4901 -0.5992 -5.1113 17 6 11.6739 -1.2603 -3.1798 18 16 13.1022 -1.1534 -4.2864 19 6 14.3876 -1.6122 -3.1720 20 1 14.1524 -1.8522 -2.1456 21 6 15.7024 -1.6661 -3.6135 22 7 16.6626 -2.0093 -2.7811 23 14 16.1092 -1.2517 -5.3890 24 1 16.3908 0.2016 -5.5062 25 1 17.3040 -2.0234 -5.8162 26 1 14.9563 -1.6041 -6.2561 27 6 6.9602 -1.6765 -4.0940 28 1 -1.0499 0.0001 -0.0002 29 1 3.0097 -0.6246 0.8154 30 1 3.0089 1.0197 0.1340 31 1 2.5044 -0.8107 -1.9569 32 1 4.8210 -2.9805 -3.9611 33 1 4.8237 -3.2181 -2.1974 34 1 3.3671 -2.5951 -3.0089 35 1 6.2545 0.7548 -3.8030 36 1 7.3750 0.7307 -2.3745 37 1 8.2109 -0.0945 -5.0160 38 1 9.0004 -2.3485 -1.8039 39 1 10.0726 -0.9881 -1.3943 40 1 8.3091 -0.7504 -1.4347 41 1 11.8064 -0.5693 -2.3472 42 1 11.5861 -2.2773 -2.7975 43 1 17.5815 -2.0467 -3.0897 44 1 7.3849 -2.6768 -4.0107 45 1 6.2609 -1.5833 -4.9250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569483321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:38 Heat of formation + Delta-G solvation = 42.546825 kcal Electronic energy + Delta-G solvation = -26422.509488 eV Core-core repulsion = 22570.197542 eV Total energy + Delta-G solvation = -3852.311946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36708 -39.85114 -38.57425 -35.91771 -34.99157 -33.45596 -32.49562 -32.39600 -29.46571 -27.80453 -27.63056 -26.26174 -26.00083 -25.55228 -23.49082 -20.98856 -20.67677 -19.24877 -18.63844 -17.70355 -17.47310 -17.08730 -16.72367 -16.18450 -15.96870 -15.54591 -15.29683 -15.05186 -14.90336 -14.64656 -14.09068 -13.86227 -13.66512 -13.49028 -13.42086 -12.96294 -12.79231 -12.71353 -12.63996 -12.47832 -12.09690 -11.91066 -11.81568 -11.41678 -11.25317 -11.19777 -11.09175 -11.04109 -10.97159 -10.54144 -10.11093 -9.82177 -9.59157 -9.48028 -9.16173 -8.96522 -8.50171 -8.44202 -6.87446 -6.24914 -3.96282 1.80168 2.15276 2.25815 2.72926 2.89679 2.94217 3.21373 3.36187 3.53463 3.60443 3.66520 3.68197 4.11532 4.30433 4.36605 4.44632 4.51024 4.55527 4.72176 4.95053 4.96211 4.98759 5.02779 5.10775 5.14015 5.15502 5.26258 5.27873 5.43638 5.47235 5.50751 5.60476 5.71304 5.79117 5.81156 5.87930 5.90050 6.05446 6.13464 6.52768 6.67992 6.89775 6.98558 7.54516 7.78727 7.98240 8.46268 8.48149 9.21343 10.84343 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033715 B = 0.001894 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.297118 B =14783.552093 C =15195.973763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.210 4.210 3 C 0.231 3.769 4 N -0.734 5.734 5 C 0.523 3.477 6 O -0.511 6.511 7 C 0.028 3.972 8 H 0.076 0.924 9 C -0.144 4.144 10 N -0.442 5.442 11 C -0.010 4.010 12 C 0.124 3.876 13 N -0.596 5.596 14 C 0.082 3.918 15 C 0.535 3.465 16 O -0.521 6.521 17 C -0.119 4.119 18 S -0.145 6.145 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C -0.014 4.014 28 H 0.222 0.778 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.402 0.598 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.270 0.730 44 H 0.094 0.906 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.695 1.952 2.128 34.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.211 4.211 3 C 0.109 3.891 4 N -0.388 5.388 5 C 0.308 3.692 6 O -0.384 6.384 7 C -0.084 4.084 8 H 0.094 0.906 9 C -0.202 4.202 10 N -0.165 5.165 11 C -0.140 4.140 12 C 0.018 3.982 13 N -0.331 5.331 14 C -0.061 4.061 15 C 0.323 3.677 16 O -0.396 6.396 17 C -0.269 4.269 18 S 0.082 5.918 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.144 4.144 28 H 0.239 0.761 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -33.607 2.303 1.742 33.731 hybrid contribution -0.734 -0.052 -0.111 0.744 sum -34.341 2.251 1.631 34.453 Atomic orbital electron populations 1.25063 0.95982 1.00151 0.97594 1.22932 0.94271 1.01259 1.02622 1.18048 0.83046 1.00907 0.87090 1.45998 1.07374 1.67175 1.18297 1.20437 0.81506 0.77986 0.89266 1.90744 1.54917 1.46803 1.45953 1.22245 0.92489 0.98850 0.94814 0.90608 1.21815 1.00766 0.93848 1.03784 1.69044 1.05320 1.10948 1.31161 1.24328 0.96722 0.93117 0.99824 1.21879 0.84231 0.95384 0.96716 1.47404 1.05094 1.69040 1.11523 1.21847 1.03286 1.00931 0.80033 1.20342 0.83884 0.76230 0.87272 1.90675 1.85959 1.46935 1.16052 1.23303 0.95542 1.05139 1.02939 1.84742 0.98595 1.90883 1.17623 1.22321 0.92393 1.53296 0.98739 0.89372 1.24709 0.95066 0.93440 0.98070 1.69945 1.00536 1.46005 1.35255 0.86733 0.80171 0.79618 0.85314 1.19243 1.19994 1.15931 1.24383 0.96909 1.01661 0.91464 0.76108 0.88929 0.89010 0.76376 0.90966 0.90921 0.91728 0.90414 0.88458 0.86625 0.92735 0.91311 0.89363 0.88425 0.88411 0.91992 0.88798 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 19.25 29.55 0.57 -0.18 16 2 C -0.21 -1.21 13.46 -37.13 -0.50 -1.71 16 3 C 0.23 1.43 6.15 -6.83 -0.04 1.39 16 4 N -0.73 -4.36 5.43 -63.16 -0.34 -4.71 16 5 C 0.52 4.50 7.10 -10.98 -0.08 4.42 16 6 O -0.51 -6.49 16.23 5.55 0.09 -6.40 16 7 C 0.03 0.20 2.14 -68.86 -0.15 0.05 16 8 H 0.08 0.39 7.52 -51.93 -0.39 0.00 16 9 C -0.14 -0.76 8.99 37.16 0.33 -0.43 16 10 N -0.44 -4.09 4.26 -237.83 -1.01 -5.10 16 11 C -0.01 -0.10 6.38 -7.48 -0.05 -0.15 16 12 C 0.12 1.44 4.66 -67.70 -0.32 1.12 16 13 N -0.60 -8.50 3.11 -173.60 -0.54 -9.04 16 14 C 0.08 1.02 9.33 59.85 0.56 1.58 16 15 C 0.53 9.91 7.69 -10.98 -0.08 9.82 16 16 O -0.52 -11.31 15.38 5.56 0.09 -11.22 16 17 C -0.12 -2.39 4.71 36.01 0.17 -2.22 16 18 S -0.14 -3.74 18.55 -107.50 -1.99 -5.73 16 19 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 20 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.84 13.97 55.49 0.78 -26.07 16 23 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 C -0.01 -0.13 6.08 -7.46 -0.05 -0.17 16 28 H 0.22 0.24 7.80 -54.10 -0.42 -0.18 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 1.48 7.88 -40.82 -0.32 1.15 16 32 H 0.07 0.35 7.03 -51.93 -0.36 -0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.21 7.57 -51.93 -0.39 -0.18 16 35 H 0.08 0.59 7.54 -51.93 -0.39 0.20 16 36 H 0.10 1.09 7.25 -51.93 -0.38 0.71 16 37 H 0.12 1.45 7.29 -51.93 -0.38 1.07 16 38 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 40 H 0.09 1.07 5.68 -51.93 -0.29 0.78 16 41 H 0.10 1.86 7.40 -51.92 -0.38 1.47 16 42 H 0.10 1.86 8.11 -51.91 -0.42 1.44 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 0.53 7.66 -51.93 -0.40 0.14 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -36.54 389.34 -7.76 -44.30 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.56 Total: -0.56 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 0.59 Total: 1.36 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -1.12 Total: -44.91 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.18 Total: -17.62 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.54 -7.76 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.847 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds