Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47521 * 67.49195 * 3 2 1 5 5 C 1.34777 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 3 8 8 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 9 9 C 1.52996 * 109.46842 * 299.72137 * 7 5 4 10 10 N 1.46902 * 109.47027 * 179.72353 * 7 5 4 11 11 C 1.47479 * 110.99603 * 275.97016 * 10 7 5 12 12 C 1.53514 * 87.92939 * 221.29709 * 11 10 7 13 13 N 1.46499 * 114.17118 * 272.37823 * 12 11 10 14 14 C 1.46500 * 120.00022 * 33.83716 * 13 12 11 15 15 C 1.34776 * 120.00175 * 213.84472 * 13 12 11 16 16 O 1.21278 * 120.00076 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.00125 * 180.02562 * 15 13 12 18 18 S 1.80998 * 109.47113 * 179.97438 * 17 15 13 19 19 C 1.76199 * 99.99979 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99960 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99834 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99977 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47333 * 89.99817 * 23 21 19 25 25 H 1.48504 * 109.46822 * 209.99648 * 23 21 19 26 26 H 1.48496 * 109.46752 * 329.99552 * 23 21 19 27 27 C 1.47478 * 110.99765 * 179.97438 * 10 7 5 28 28 H 4.40642 * 5.51406 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47441 * 307.48741 * 3 2 1 30 30 H 1.09002 * 109.47191 * 187.49157 * 3 2 1 31 31 H 0.97000 * 119.99484 * 359.97438 * 4 3 2 32 32 H 1.09003 * 109.47307 * 180.02562 * 9 7 5 33 33 H 1.09002 * 109.47575 * 299.99754 * 9 7 5 34 34 H 1.09001 * 109.47551 * 59.99933 * 9 7 5 35 35 H 1.09003 * 113.47830 * 336.06166 * 11 10 7 36 36 H 1.09001 * 113.47695 * 106.53290 * 11 10 7 37 37 H 1.08997 * 114.17078 * 139.67073 * 12 11 10 38 38 H 1.09010 * 109.46755 * 90.00429 * 14 13 12 39 39 H 1.08996 * 109.47404 * 209.99795 * 14 13 12 40 40 H 1.08996 * 109.47326 * 330.00726 * 14 13 12 41 41 H 1.09002 * 109.46732 * 299.99521 * 17 15 13 42 42 H 1.09003 * 109.47102 * 59.99374 * 17 15 13 43 43 H 0.97000 * 119.99440 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.47375 * 253.46734 * 27 10 7 45 45 H 1.09004 * 113.47700 * 23.87607 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5279 -1.2760 5 6 4.4598 -0.6220 -1.5032 6 8 5.2477 -0.2687 -0.6515 7 6 4.9624 -1.1599 -2.8182 8 1 4.5959 -0.5331 -3.6311 9 6 4.4571 -2.5912 -3.0102 10 7 6.4314 -1.1548 -2.8200 11 6 6.9548 0.1682 -3.2082 12 6 8.0125 -0.5591 -4.0502 13 7 9.2288 -0.9099 -3.3128 14 6 9.1475 -1.2723 -1.8957 15 6 10.4227 -0.8989 -3.9381 16 8 10.4901 -0.5992 -5.1113 17 6 11.6739 -1.2603 -3.1798 18 16 13.1022 -1.1534 -4.2864 19 6 14.3876 -1.6122 -3.1720 20 1 14.1524 -1.8522 -2.1456 21 6 15.7024 -1.6661 -3.6135 22 7 16.6626 -2.0093 -2.7811 23 14 16.1092 -1.2517 -5.3890 24 1 16.3908 0.2016 -5.5062 25 1 17.3040 -2.0234 -5.8162 26 1 14.9563 -1.6041 -6.2561 27 6 6.9602 -1.6765 -4.0940 28 1 -1.0499 0.0001 -0.0002 29 1 3.0097 -0.6246 0.8154 30 1 3.0089 1.0197 0.1340 31 1 2.5044 -0.8107 -1.9569 32 1 4.8210 -2.9805 -3.9611 33 1 4.8237 -3.2181 -2.1974 34 1 3.3671 -2.5951 -3.0089 35 1 6.2545 0.7548 -3.8030 36 1 7.3750 0.7307 -2.3745 37 1 8.2109 -0.0945 -5.0160 38 1 9.0004 -2.3485 -1.8039 39 1 10.0726 -0.9881 -1.3943 40 1 8.3091 -0.7504 -1.4347 41 1 11.8064 -0.5693 -2.3472 42 1 11.5861 -2.2773 -2.7975 43 1 17.5815 -2.0467 -3.0897 44 1 7.3849 -2.6768 -4.0107 45 1 6.2609 -1.5833 -4.9250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569483321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = 15.053260 kcal Electronic energy + Delta-G solvation = -26423.701698 eV Core-core repulsion = 22570.197542 eV Total energy + Delta-G solvation = -3853.504156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17989 -40.75195 -39.71583 -36.49850 -36.11177 -34.66686 -34.10325 -33.06697 -30.88171 -28.59191 -28.30265 -27.85717 -27.17231 -26.74621 -24.15687 -22.09145 -21.29228 -20.02961 -19.69014 -19.41037 -18.32601 -17.96338 -17.59352 -17.17914 -16.99857 -16.89490 -16.63832 -16.10134 -16.02445 -15.45776 -15.35070 -14.97497 -14.73512 -14.58079 -14.34952 -14.28891 -13.78187 -13.60258 -13.51085 -13.37756 -13.27527 -13.21715 -13.00344 -12.91354 -12.65636 -12.46924 -11.97386 -11.93221 -11.83674 -11.78351 -11.47786 -11.16346 -10.99273 -10.75451 -10.53260 -10.15203 -9.84255 -9.66782 -8.99615 -8.50704 -6.21998 0.97375 1.32451 1.38186 1.46094 1.48765 1.54481 1.59490 1.81610 2.04176 2.26105 2.39831 2.68657 2.87383 2.97220 3.33712 3.40827 3.61190 3.64089 3.80305 3.91903 4.08310 4.14812 4.25668 4.33749 4.36595 4.46773 4.48012 4.52605 4.58072 4.68667 4.76971 4.79611 4.84703 4.88821 4.98935 5.06071 5.10282 5.28670 5.30609 5.57444 5.71394 5.88617 6.11935 6.26498 6.49122 6.55828 6.94051 7.06889 7.20799 8.61829 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033715 B = 0.001894 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.297118 B =14783.552093 C =15195.973763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.247 4.247 3 C 0.233 3.767 4 N -0.719 5.719 5 C 0.521 3.479 6 O -0.560 6.560 7 C 0.030 3.970 8 H 0.104 0.896 9 C -0.140 4.140 10 N -0.459 5.459 11 C 0.002 3.998 12 C 0.104 3.896 13 N -0.584 5.584 14 C 0.085 3.915 15 C 0.537 3.463 16 O -0.558 6.558 17 C -0.107 4.107 18 S -0.170 6.170 19 C -0.531 4.531 20 H 0.060 0.940 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.236 1.236 27 C 0.002 3.998 28 H 0.253 0.747 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.415 0.585 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.277 0.723 44 H 0.084 0.916 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.918 1.933 0.853 37.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.248 4.248 3 C 0.110 3.890 4 N -0.373 5.373 5 C 0.307 3.693 6 O -0.437 6.437 7 C -0.082 4.082 8 H 0.121 0.879 9 C -0.197 4.197 10 N -0.183 5.183 11 C -0.128 4.128 12 C -0.001 4.001 13 N -0.316 5.316 14 C -0.057 4.057 15 C 0.325 3.675 16 O -0.437 6.437 17 C -0.257 4.257 18 S 0.056 5.944 19 C -0.679 4.679 20 H 0.078 0.922 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.160 1.160 27 C -0.127 4.127 28 H 0.269 0.731 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -36.907 2.268 0.484 36.980 hybrid contribution 0.032 -0.047 0.440 0.443 sum -36.875 2.221 0.924 36.953 Atomic orbital electron populations 1.25855 0.96711 0.98267 0.95735 1.22979 0.94464 1.02988 1.04356 1.17920 0.83827 1.00317 0.86905 1.45885 1.06903 1.66014 1.18505 1.20804 0.81806 0.77270 0.89407 1.90727 1.56210 1.49183 1.47570 1.22331 0.91002 1.00336 0.94529 0.87862 1.21817 1.02273 0.92217 1.03442 1.68990 1.07275 1.10560 1.31469 1.24254 0.96269 0.93339 0.98909 1.22151 0.83730 0.97736 0.96448 1.47344 1.04797 1.67319 1.12109 1.21907 1.03451 1.01486 0.78904 1.19959 0.84492 0.76430 0.86655 1.90658 1.86503 1.49178 1.17330 1.23279 0.94113 1.06274 1.02065 1.84599 1.00102 1.90838 1.18840 1.22463 0.93961 1.53175 0.98268 0.92193 1.25577 0.94955 0.93250 1.02145 1.70024 1.01206 1.46976 1.37278 0.85848 0.80333 0.79764 0.80296 1.18660 1.18214 1.15969 1.24298 0.96112 0.99900 0.92433 0.73126 0.89854 0.89744 0.74809 0.90052 0.92783 0.89330 0.87831 0.90323 0.87567 0.91895 0.91457 0.88795 0.87383 0.87315 0.91356 0.89734 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 19.25 74.32 1.43 0.49 16 2 C -0.25 -2.51 13.46 31.12 0.42 -2.09 16 3 C 0.23 2.78 6.15 84.57 0.52 3.30 16 4 N -0.72 -7.45 5.43 -472.14 -2.57 -10.02 16 5 C 0.52 8.25 7.10 87.66 0.62 8.87 16 6 O -0.56 -14.15 16.23 -3.04 -0.05 -14.20 16 7 C 0.03 0.33 2.14 44.17 0.09 0.43 16 8 H 0.10 0.63 7.52 -2.39 -0.02 0.61 16 9 C -0.14 -1.06 8.99 71.98 0.65 -0.42 16 10 N -0.46 -7.59 4.26 -906.35 -3.86 -11.46 16 11 C 0.00 0.03 6.38 83.62 0.53 0.56 16 12 C 0.10 2.27 4.66 45.46 0.21 2.48 16 13 N -0.58 -16.19 3.11 -821.53 -2.56 -18.75 16 14 C 0.08 2.04 9.33 127.77 1.19 3.24 16 15 C 0.54 19.75 7.69 87.66 0.67 20.43 16 16 O -0.56 -24.20 15.38 -3.02 -0.05 -24.24 16 17 C -0.11 -4.30 4.71 71.24 0.34 -3.96 16 18 S -0.17 -8.84 18.55 -56.49 -1.05 -9.89 16 19 C -0.53 -31.67 10.04 67.95 0.68 -30.98 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 21 C 0.05 2.75 5.50 84.86 0.47 3.22 16 22 N -0.92 -56.64 13.97 21.65 0.30 -56.34 16 23 Si 0.92 45.54 27.74 68.60 1.90 47.44 16 24 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 27 C 0.00 0.03 6.08 83.63 0.51 0.54 16 28 H 0.25 -0.36 7.80 -4.42 -0.03 -0.39 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.42 2.00 7.88 -92.71 -0.73 1.27 16 32 H 0.08 0.50 7.03 -2.39 -0.02 0.49 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.25 7.57 -2.39 -0.02 0.23 16 35 H 0.10 1.26 7.54 -2.39 -0.02 1.24 16 36 H 0.08 1.70 7.25 -2.39 -0.02 1.68 16 37 H 0.11 2.55 7.29 -2.39 -0.02 2.53 16 38 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.07 1.64 6.44 -2.39 -0.02 1.63 16 40 H 0.09 2.23 5.68 -2.39 -0.01 2.22 16 41 H 0.11 4.12 7.40 -2.39 -0.02 4.10 16 42 H 0.11 4.13 8.11 -2.39 -0.02 4.11 16 43 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.11 1.04 7.66 -2.38 -0.02 1.02 16 Total: -1.00 -80.99 389.34 0.65 -80.34 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.24 Total: 11.00 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 8.34 Total: 6.11 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -8.68 Total: -96.56 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.10 Total: -38.44 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -80.99 0.65 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.390 kcal (2) G-P(sol) polarization free energy of solvation -80.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds