Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 N 1.46903 * 109.47235 * 240.00228 * 2 1 3 5 5 C 1.46900 * 111.00001 * 85.00073 * 4 2 1 6 6 C 1.50700 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.41375 * 126.80615 * 94.99912 * 6 5 4 8 8 C 1.35450 * 103.98890 * 180.02562 * 7 6 5 9 9 O 1.34044 * 106.44322 * 359.97438 * 8 7 6 10 10 N 1.20920 * 111.56516 * 359.71457 * 9 8 7 11 11 C 1.52995 * 109.47289 * 120.00233 * 2 1 3 12 12 H 1.08999 * 110.91737 * 59.80856 * 11 2 1 13 13 C 1.55159 * 111.00605 * 183.71465 * 11 2 1 14 14 C 1.54336 * 103.02203 * 153.37820 * 13 11 2 15 15 N 1.47019 * 107.26559 * 338.14007 * 14 13 11 16 16 C 1.34775 * 125.64639 * 178.85010 * 15 14 13 17 17 O 1.21281 * 120.00077 * 179.69194 * 16 15 14 18 18 C 1.50696 * 120.00244 * 359.68590 * 16 15 14 19 19 S 1.81004 * 109.47269 * 179.97438 * 18 16 15 20 20 C 1.76208 * 100.00009 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99555 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99625 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00437 * 0.27607 * 22 20 19 24 24 Si 1.86808 * 119.99508 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47386 * 89.99882 * 24 22 20 26 26 H 1.48496 * 109.46791 * 210.00042 * 24 22 20 27 27 H 1.48498 * 109.47124 * 329.99666 * 24 22 20 28 28 C 1.47420 * 108.70287 * 358.58418 * 15 14 13 29 29 H 1.09006 * 109.47485 * 65.05801 * 1 2 3 30 30 H 1.08998 * 109.47704 * 185.05844 * 1 2 3 31 31 H 1.09000 * 109.47404 * 305.05639 * 1 2 3 32 32 H 1.00902 * 110.99880 * 321.04197 * 4 2 1 33 33 H 1.09006 * 109.47031 * 299.99688 * 5 4 2 34 34 H 1.08997 * 109.47347 * 60.00134 * 5 4 2 35 35 H 1.08001 * 128.00742 * 0.02917 * 7 6 5 36 36 H 1.08002 * 126.77890 * 180.02562 * 8 7 6 37 37 H 1.09002 * 110.71733 * 271.93674 * 13 11 2 38 38 H 1.08998 * 110.72155 * 35.21178 * 13 11 2 39 39 H 1.08999 * 109.99359 * 218.65938 * 14 13 11 40 40 H 1.09005 * 109.77408 * 97.49496 * 14 13 11 41 41 H 1.09006 * 109.47135 * 60.00636 * 18 16 15 42 42 H 1.09000 * 109.47484 * 300.00269 * 18 16 15 43 43 H 0.97004 * 119.99838 * 359.73199 * 23 22 20 44 44 H 1.09007 * 110.36735 * 143.19848 * 28 15 14 45 45 H 1.08997 * 110.36717 * 265.40935 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5873 -0.5217 -3.5560 7 6 1.8046 -1.1297 -4.5642 8 6 2.7178 -1.6589 -5.4132 9 8 3.9230 -1.3621 -4.9071 10 7 3.8307 -0.7273 -3.8821 11 6 2.0399 -0.7213 1.2492 12 1 1.6869 -1.7522 1.2746 13 6 3.5881 -0.6613 1.3329 14 6 3.8589 -0.7716 2.8483 15 7 2.6315 -0.3555 3.5424 16 6 2.4539 -0.3323 4.8782 17 8 1.3961 0.0363 5.3430 18 6 3.5697 -0.7644 5.7943 19 16 3.0275 -0.6202 7.5152 20 6 4.4827 -1.1718 8.3417 21 1 5.3494 -1.4678 7.7693 22 6 4.5149 -1.2260 9.7282 23 7 3.4567 -0.8705 10.4256 24 14 6.0579 -1.8101 10.6045 25 1 6.9422 -0.6486 10.8770 26 1 5.6833 -2.4587 11.8867 27 1 6.7746 -2.7873 9.7462 28 6 1.6294 0.0382 2.5354 29 1 -0.3634 0.4334 -0.9319 30 1 -0.3634 -1.0236 0.0906 31 1 -0.3634 0.5903 0.8412 32 1 1.4495 -1.4979 -1.4101 33 1 1.0870 0.6164 -2.5526 34 1 2.7588 1.0462 -2.1182 35 1 0.7278 -1.1641 -4.6401 36 1 2.5149 -2.2104 -6.3193 37 1 4.0360 -1.4980 0.7968 38 1 3.9587 0.2883 0.9468 39 1 4.6835 -0.1161 3.1282 40 1 4.0989 -1.8032 3.1059 41 1 4.4394 -0.1274 5.6332 42 1 3.8337 -1.8004 5.5818 43 1 2.6555 -0.5669 9.9706 44 1 0.6321 -0.2659 2.8536 45 1 1.6617 1.1149 2.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569804886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -3.249873 kcal Electronic energy + Delta-G solvation = -26015.147463 eV Core-core repulsion = 22160.849623 eV Total energy + Delta-G solvation = -3854.297840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.83183 -41.22756 -39.35093 -37.58868 -35.26599 -34.76826 -33.10525 -32.48501 -31.22445 -30.92067 -28.74149 -27.15565 -26.99904 -24.75624 -23.95459 -22.93614 -22.07729 -21.15792 -20.86188 -20.10331 -18.67172 -18.47800 -18.20538 -17.62017 -17.06901 -16.55463 -16.47922 -15.87620 -15.67824 -15.49687 -15.34779 -15.06521 -14.66908 -14.58961 -14.27933 -14.16436 -14.00447 -13.83336 -13.68649 -13.55606 -13.43702 -13.27346 -12.93165 -12.75876 -12.24065 -12.17621 -11.95373 -11.91104 -11.80132 -11.58110 -11.56404 -11.13667 -11.12118 -11.07973 -10.51470 -10.35852 -9.78531 -9.41839 -8.94810 -8.90683 -6.30443 0.68547 1.11775 1.30725 1.42652 1.50338 1.60543 1.79016 1.98246 2.31913 2.52302 3.00330 3.00908 3.07500 3.31423 3.48437 3.59203 3.72248 3.73264 3.98641 4.04754 4.19857 4.23821 4.26481 4.29214 4.30871 4.36350 4.44080 4.47164 4.52222 4.63875 4.75815 4.81066 4.83144 4.86069 4.96980 4.99773 5.11518 5.19783 5.24427 5.25586 5.39387 5.62240 5.94594 6.12773 6.28321 6.38119 6.98123 7.04297 7.42671 8.48653 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.001766 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.853767 B =15848.733016 C =16768.481541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.107 3.893 3 H 0.086 0.914 4 N -0.679 5.679 5 C 0.141 3.859 6 C 0.005 3.995 7 C -0.240 4.240 8 C -0.049 4.049 9 O 0.082 5.918 10 N -0.389 5.389 11 C -0.075 4.075 12 H 0.085 0.915 13 C -0.097 4.097 14 C 0.087 3.913 15 N -0.615 5.615 16 C 0.545 3.455 17 O -0.567 6.567 18 C -0.101 4.101 19 S -0.193 6.193 20 C -0.614 4.614 21 H 0.074 0.926 22 C -0.018 4.018 23 N -0.912 5.912 24 Si 1.140 2.860 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.263 1.263 28 C 0.109 3.891 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.349 0.651 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.194 0.806 36 H 0.257 0.743 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.260 0.740 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -1.372 -37.916 38.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.003 4.003 3 H 0.104 0.896 4 N -0.312 5.312 5 C 0.012 3.988 6 C -0.154 4.154 7 C -0.262 4.262 8 C -0.130 4.130 9 O 0.016 5.984 10 N -0.094 5.094 11 C -0.095 4.095 12 H 0.104 0.896 13 C -0.135 4.135 14 C -0.035 4.035 15 N -0.349 5.349 16 C 0.333 3.667 17 O -0.446 6.446 18 C -0.252 4.252 19 S 0.034 5.966 20 C -0.762 4.762 21 H 0.092 0.908 22 C -0.221 4.221 23 N -0.547 5.547 24 Si 0.957 3.043 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.013 4.013 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.212 0.788 36 H 0.272 0.728 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.930 -0.678 -34.998 35.058 hybrid contribution -1.446 -0.072 -2.007 2.475 sum -3.376 -0.749 -37.006 37.167 Atomic orbital electron populations 1.22510 0.95881 1.02894 1.02912 1.21335 0.93218 0.97538 0.88186 0.89591 1.60346 1.58347 1.09717 1.02753 1.20174 1.00372 0.93412 0.84860 1.23850 0.89014 1.02554 1.00009 1.23123 1.03374 1.04204 0.95462 1.26872 0.82419 1.01432 1.02285 1.84831 1.32524 1.52412 1.28594 1.73901 1.22601 1.12387 1.00545 1.22227 0.95874 0.99708 0.91662 0.89631 1.22453 0.95279 1.04154 0.91617 1.22419 0.86284 1.00809 0.93961 1.48433 1.17262 1.65577 1.03663 1.19687 0.87852 0.77276 0.81933 1.90679 1.29193 1.48992 1.75779 1.23156 1.00394 1.05603 0.96044 1.85018 1.24731 1.87803 0.99083 1.24052 1.00394 1.54663 0.97076 0.90768 1.27865 1.05905 0.93649 0.94725 1.70888 1.04136 1.40528 1.39132 0.82684 0.69665 0.77102 0.74842 1.19200 1.20276 1.18725 1.22372 0.92049 0.99614 0.87295 0.91180 0.91896 0.92171 0.83145 0.90761 0.90127 0.78838 0.72761 0.88671 0.90080 0.90687 0.90789 0.87535 0.87549 0.92865 0.91754 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.93 71.98 0.64 -1.11 16 2 C 0.11 1.18 2.09 44.91 0.09 1.27 16 3 H 0.09 0.96 7.80 -2.38 -0.02 0.94 16 4 N -0.68 -7.23 5.99 -495.58 -2.97 -10.20 16 5 C 0.14 1.44 6.07 85.56 0.52 1.96 16 6 C 0.00 0.06 6.84 43.58 0.30 0.36 16 7 C -0.24 -1.70 11.12 22.40 0.25 -1.45 16 8 C -0.05 -0.29 12.30 67.18 0.83 0.54 16 9 O 0.08 1.17 11.20 71.60 0.80 1.97 16 10 N -0.39 -7.09 12.07 -49.56 -0.60 -7.69 16 11 C -0.07 -1.15 2.77 -9.40 -0.03 -1.18 16 12 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 13 C -0.10 -1.53 6.18 31.79 0.20 -1.33 16 14 C 0.09 1.86 6.49 86.73 0.56 2.42 16 15 N -0.61 -17.88 3.33 -811.77 -2.70 -20.58 16 16 C 0.54 21.90 7.87 87.66 0.69 22.59 16 17 O -0.57 -27.75 16.12 -3.03 -0.05 -27.80 16 18 C -0.10 -4.29 5.35 71.23 0.38 -3.91 16 19 S -0.19 -11.01 19.60 -56.49 -1.11 -12.12 16 20 C -0.61 -36.32 9.50 67.95 0.65 -35.67 16 21 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 22 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 23 N -0.91 -58.74 13.67 21.65 0.30 -58.44 16 24 Si 1.14 50.14 29.92 68.60 2.05 52.19 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 28 C 0.11 2.49 5.52 86.86 0.48 2.97 16 29 H 0.07 0.48 7.35 -2.38 -0.02 0.47 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.71 7.60 -2.39 -0.02 0.70 16 32 H 0.35 3.22 8.47 -89.69 -0.76 2.46 16 33 H 0.07 0.46 7.36 -2.38 -0.02 0.44 16 34 H 0.08 0.99 8.05 -2.39 -0.02 0.97 16 35 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.26 -1.06 8.06 -2.91 -0.02 -1.08 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 42 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 43 H 0.26 17.47 7.13 -92.71 -0.66 16.81 16 44 H 0.06 1.66 8.04 -2.38 -0.02 1.64 16 45 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -84.10 388.52 2.10 -82.00 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.35 Total: 13.81 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 6.02 Total: -13.14 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -5.97 Total: -96.92 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: 0.75 Total: -25.82 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -1.11 Total: -12.12 kcal Total: -84.10 2.10 -82.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569804886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.752 kcal (2) G-P(sol) polarization free energy of solvation -84.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds