Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.52996 * 109.46894 * 175.00377 * 4 2 1 6 6 C 1.53000 * 109.47246 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47449 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00089 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00103 * 180.02562 * 8 7 6 11 11 S 1.81007 * 109.47181 * 180.02562 * 10 8 7 12 12 C 1.76200 * 99.99804 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00113 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00010 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00052 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46887 * 89.99780 * 16 14 12 18 18 H 1.48497 * 109.47308 * 209.99711 * 16 14 12 19 19 H 1.48495 * 109.47096 * 330.00126 * 16 14 12 20 20 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 21 21 C 1.34779 * 119.99741 * 275.00368 * 20 2 1 22 22 O 1.21694 * 120.00441 * 359.97438 * 21 20 2 23 23 C 1.46681 * 119.99801 * 179.97438 * 21 20 2 24 24 C 1.37874 * 126.23562 * 179.97438 * 23 21 20 25 25 C 1.39835 * 107.08817 * 179.97438 * 24 23 21 26 26 C 1.35453 * 107.86012 * 0.02562 * 25 24 23 27 27 N 1.35535 * 108.87743 * 359.76660 * 26 25 24 28 28 H 0.96994 * 125.67857 * 180.26133 * 27 26 25 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 33 33 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 34 34 H 1.09001 * 109.46995 * 299.99751 * 5 4 2 35 35 H 1.08998 * 109.47867 * 60.00073 * 5 4 2 36 36 H 1.09001 * 109.46952 * 299.99816 * 6 5 4 37 37 H 1.09004 * 109.47403 * 59.99668 * 6 5 4 38 38 H 0.96996 * 120.00131 * 0.02562 * 7 6 5 39 39 H 1.09001 * 109.46945 * 300.00091 * 10 8 7 40 40 H 1.08994 * 109.47240 * 59.99696 * 10 8 7 41 41 H 0.97001 * 120.00242 * 180.02562 * 15 14 12 42 42 H 0.96997 * 120.00110 * 94.99637 * 20 2 1 43 43 H 1.07997 * 126.45361 * 359.97438 * 24 23 21 44 44 H 1.07993 * 126.06691 * 179.97438 * 25 24 23 45 45 H 1.08011 * 125.56054 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0750 -1.3351 -2.5624 7 7 5.5350 -1.2313 -2.6244 8 6 6.2081 -1.7972 -3.6457 9 8 5.6051 -2.3921 -4.5137 10 6 7.7100 -1.6909 -3.7091 11 16 8.3135 -2.5447 -5.1867 12 6 10.0453 -2.2704 -5.0127 13 1 10.4215 -1.7123 -4.1680 14 6 10.9259 -2.7707 -5.9617 15 7 10.4674 -3.4504 -6.9915 16 14 12.7619 -2.4793 -5.7777 17 1 13.3633 -3.5896 -4.9962 18 1 13.3912 -2.4222 -7.1215 19 1 12.9906 -1.1946 -5.0689 20 7 2.0184 -0.6906 1.1962 21 6 2.1470 -0.0182 2.3572 22 8 1.8580 1.1627 2.4117 23 6 2.6354 -0.7098 3.5550 24 6 2.8159 -0.1506 4.8022 25 6 3.2926 -1.1627 5.6412 26 6 3.3932 -2.2971 4.9079 27 7 2.9923 -2.0365 3.6397 28 1 2.9631 -2.6778 2.9126 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6055 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3572 35 1 3.9995 -1.0728 -0.4259 36 1 3.7867 -2.3853 -2.5183 37 1 3.6405 -0.8760 -3.4504 38 1 6.0173 -0.7558 -1.9300 39 1 7.9983 -0.6407 -3.7536 40 1 8.1446 -2.1496 -2.8210 41 1 11.0828 -3.8003 -7.6545 42 1 2.2490 -1.6317 1.1527 43 1 2.6252 0.8757 5.0790 44 1 3.5379 -1.0581 6.6877 45 1 3.7332 -3.2543 5.2751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572077683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -47.205090 kcal Electronic energy + Delta-G solvation = -25367.162574 eV Core-core repulsion = 21510.958693 eV Total energy + Delta-G solvation = -3856.203881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69501 -39.79229 -39.18320 -37.09983 -35.05524 -32.87241 -32.44846 -31.54468 -31.01829 -29.40220 -29.08375 -26.07552 -25.43446 -23.74513 -22.09224 -21.55088 -20.85498 -20.52501 -20.31439 -19.37412 -17.84966 -16.88451 -16.32777 -16.26882 -15.85449 -15.66561 -15.52127 -14.82237 -14.67355 -14.44895 -14.33797 -14.16483 -13.98521 -13.78448 -13.47995 -13.11423 -13.07810 -12.84932 -12.74269 -12.61919 -12.56378 -11.96012 -11.86102 -11.74839 -11.28290 -11.13565 -11.07818 -11.04337 -10.77518 -10.47981 -9.83792 -9.63853 -9.45745 -9.42912 -9.09146 -8.93148 -8.68115 -8.26309 -6.52507 -6.23669 -3.94469 1.04331 2.32843 2.58995 2.69194 3.00278 3.01438 3.06290 3.20838 3.26411 3.30566 3.66836 4.17209 4.18594 4.43852 4.50974 4.54668 4.62033 4.83939 4.91883 4.94410 5.02317 5.07356 5.11488 5.17004 5.22005 5.29775 5.32014 5.49296 5.56914 5.63303 5.65148 5.75105 5.76883 5.80161 5.87355 5.92454 6.02283 6.11211 6.25051 6.46628 6.57480 6.85222 7.05180 7.57604 7.66393 7.74823 8.33245 8.57479 9.21662 10.83737 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.001785 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.772166 B =15684.867040 C =17153.362675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.093 0.907 4 C -0.125 4.125 5 C -0.131 4.131 6 C 0.121 3.879 7 N -0.741 5.741 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.154 4.154 11 S -0.061 6.061 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 N -0.726 5.726 21 C 0.591 3.409 22 O -0.528 6.528 23 C -0.061 4.061 24 C -0.105 4.105 25 C -0.213 4.213 26 C 0.025 3.975 27 N -0.541 5.541 28 H 0.416 0.584 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.393 0.607 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.454 3.863 23.353 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.111 0.889 4 C -0.163 4.163 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.395 5.395 8 C 0.317 3.683 9 O -0.392 6.392 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 N -0.378 5.378 21 C 0.379 3.621 22 O -0.404 6.404 23 C -0.174 4.174 24 C -0.132 4.132 25 C -0.237 4.237 26 C -0.111 4.111 27 N -0.137 5.137 28 H 0.253 0.747 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.227 0.773 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.673 3.570 21.574 30.093 hybrid contribution 2.267 0.196 1.173 2.560 sum -18.406 3.767 22.747 29.502 Atomic orbital electron populations 1.22184 0.94889 1.02273 1.02911 1.21037 0.94168 0.97743 0.83142 0.88877 1.21841 0.95311 1.01571 0.97614 1.21805 0.95561 1.01664 0.97858 1.21268 0.80673 1.00614 0.97777 1.46015 1.07120 1.58690 1.27693 1.20321 0.89529 0.77715 0.80729 1.90700 1.69924 1.40799 1.37824 1.23535 0.93574 1.05876 1.07456 1.85390 1.04642 1.69568 1.23816 1.22865 0.91491 1.41138 1.12889 0.90926 1.24999 0.99630 0.94545 0.94450 1.70016 1.35415 1.33716 1.11128 0.86160 0.82867 0.78733 0.77698 1.20268 1.20731 1.19686 1.46015 1.68194 1.13625 1.09967 1.17067 0.77272 0.86235 0.81575 1.90853 1.50369 1.14792 1.84385 1.20454 1.15409 0.84636 0.96864 1.21366 1.01151 0.99916 0.90751 1.20947 1.09524 0.92762 1.00470 1.22099 1.04320 1.00817 0.83861 1.42039 1.50994 1.09378 1.11262 0.74716 0.91937 0.91217 0.92423 0.90898 0.89449 0.90913 0.91480 0.91767 0.91561 0.76865 0.89212 0.89279 0.92170 0.77313 0.83486 0.83812 0.81083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.48 37.16 0.35 -0.65 16 2 C 0.14 0.91 2.57 -67.93 -0.17 0.73 16 3 H 0.09 0.76 7.58 -51.93 -0.39 0.37 16 4 C -0.12 -0.67 4.75 -26.73 -0.13 -0.79 16 5 C -0.13 -0.89 5.21 -26.73 -0.14 -1.03 16 6 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 7 N -0.74 -9.44 5.56 -60.29 -0.33 -9.77 16 8 C 0.53 9.75 7.85 -10.98 -0.09 9.67 16 9 O -0.52 -11.65 15.86 5.56 0.09 -11.57 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 11 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 12 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 13 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 16 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 N -0.73 -4.49 4.53 -55.11 -0.25 -4.73 16 21 C 0.59 5.48 7.75 -12.85 -0.10 5.38 16 22 O -0.53 -6.85 16.55 5.19 0.09 -6.76 16 23 C -0.06 -0.50 7.06 -81.98 -0.58 -1.08 16 24 C -0.11 -0.90 10.65 -39.12 -0.42 -1.32 16 25 C -0.21 -1.41 10.81 -39.98 -0.43 -1.85 16 26 C 0.03 0.13 11.89 -16.91 -0.20 -0.07 16 27 N -0.54 -2.76 5.99 -9.39 -0.06 -2.82 16 28 H 0.42 0.93 8.19 -40.82 -0.33 0.59 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.42 7.75 -51.93 -0.40 0.02 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.39 1.47 7.73 -40.82 -0.32 1.15 16 43 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.17 0.33 8.06 -52.48 -0.42 -0.09 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -38.01 399.44 -9.29 -47.29 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.83 Total: 0.82 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.51 Total: -5.58 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.09 Total: -42.68 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.17 Total: -18.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.01 -9.29 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572077683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.088 kcal (2) G-P(sol) polarization free energy of solvation -38.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds