Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.52996 * 109.46894 * 175.00377 * 4 2 1 6 6 C 1.53000 * 109.47246 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47449 * 179.97438 * 6 5 4 8 8 C 1.34775 * 120.00089 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.50705 * 120.00103 * 180.02562 * 8 7 6 11 11 S 1.81007 * 109.47181 * 180.02562 * 10 8 7 12 12 C 1.76200 * 99.99804 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00113 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99793 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00010 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00052 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46887 * 89.99780 * 16 14 12 18 18 H 1.48497 * 109.47308 * 209.99711 * 16 14 12 19 19 H 1.48495 * 109.47096 * 330.00126 * 16 14 12 20 20 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 21 21 C 1.34779 * 119.99741 * 275.00368 * 20 2 1 22 22 O 1.21694 * 120.00441 * 359.97438 * 21 20 2 23 23 C 1.46681 * 119.99801 * 179.97438 * 21 20 2 24 24 C 1.37874 * 126.23562 * 179.97438 * 23 21 20 25 25 C 1.39835 * 107.08817 * 179.97438 * 24 23 21 26 26 C 1.35453 * 107.86012 * 0.02562 * 25 24 23 27 27 N 1.35535 * 108.87743 * 359.76660 * 26 25 24 28 28 H 0.96994 * 125.67857 * 180.26133 * 27 26 25 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 33 33 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 34 34 H 1.09001 * 109.46995 * 299.99751 * 5 4 2 35 35 H 1.08998 * 109.47867 * 60.00073 * 5 4 2 36 36 H 1.09001 * 109.46952 * 299.99816 * 6 5 4 37 37 H 1.09004 * 109.47403 * 59.99668 * 6 5 4 38 38 H 0.96996 * 120.00131 * 0.02562 * 7 6 5 39 39 H 1.09001 * 109.46945 * 300.00091 * 10 8 7 40 40 H 1.08994 * 109.47240 * 59.99696 * 10 8 7 41 41 H 0.97001 * 120.00242 * 180.02562 * 15 14 12 42 42 H 0.96997 * 120.00110 * 94.99637 * 20 2 1 43 43 H 1.07997 * 126.45361 * 359.97438 * 24 23 21 44 44 H 1.07993 * 126.06691 * 179.97438 * 25 24 23 45 45 H 1.08011 * 125.56054 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0750 -1.3351 -2.5624 7 7 5.5350 -1.2313 -2.6244 8 6 6.2081 -1.7972 -3.6457 9 8 5.6051 -2.3921 -4.5137 10 6 7.7100 -1.6909 -3.7091 11 16 8.3135 -2.5447 -5.1867 12 6 10.0453 -2.2704 -5.0127 13 1 10.4215 -1.7123 -4.1680 14 6 10.9259 -2.7707 -5.9617 15 7 10.4674 -3.4504 -6.9915 16 14 12.7619 -2.4793 -5.7777 17 1 13.3633 -3.5896 -4.9962 18 1 13.3912 -2.4222 -7.1215 19 1 12.9906 -1.1946 -5.0689 20 7 2.0184 -0.6906 1.1962 21 6 2.1470 -0.0182 2.3572 22 8 1.8580 1.1627 2.4117 23 6 2.6354 -0.7098 3.5550 24 6 2.8159 -0.1506 4.8022 25 6 3.2926 -1.1627 5.6412 26 6 3.3932 -2.2971 4.9079 27 7 2.9923 -2.0365 3.6397 28 1 2.9631 -2.6778 2.9126 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6055 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3572 35 1 3.9995 -1.0728 -0.4259 36 1 3.7867 -2.3853 -2.5183 37 1 3.6405 -0.8760 -3.4504 38 1 6.0173 -0.7558 -1.9300 39 1 7.9983 -0.6407 -3.7536 40 1 8.1446 -2.1496 -2.8210 41 1 11.0828 -3.8003 -7.6545 42 1 2.2490 -1.6317 1.1527 43 1 2.6252 0.8757 5.0790 44 1 3.5379 -1.0581 6.6877 45 1 3.7332 -3.2543 5.2751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572077683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -75.379661 kcal Electronic energy + Delta-G solvation = -25368.384315 eV Core-core repulsion = 21510.958693 eV Total energy + Delta-G solvation = -3857.425622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.20692 -40.66176 -40.32476 -37.83126 -36.09301 -34.59276 -33.68187 -32.23132 -31.71800 -30.50595 -29.77888 -27.72319 -26.75613 -24.35875 -22.80041 -22.16964 -21.63780 -21.35700 -21.02888 -19.92705 -19.81119 -17.76999 -17.53503 -17.24306 -16.88521 -16.80882 -16.55232 -16.21821 -15.81837 -15.64905 -15.09816 -14.87009 -14.77564 -14.64092 -14.52133 -14.35023 -13.96884 -13.85311 -13.57745 -13.27003 -13.17436 -13.14883 -13.11284 -12.89201 -12.64768 -12.55163 -12.35459 -11.93766 -11.74721 -11.68487 -11.21317 -11.14984 -10.96409 -10.29035 -10.25270 -10.11170 -9.95278 -9.18149 -8.67609 -8.35457 -6.13594 0.46148 1.26693 1.42010 1.46780 1.57315 1.60430 1.84152 2.05078 2.25582 2.26587 2.30489 2.36913 2.98629 3.31203 3.57822 3.89299 3.91707 3.97940 4.05047 4.24713 4.29069 4.34213 4.38830 4.42038 4.49586 4.50225 4.53805 4.65761 4.70567 4.80387 4.89006 5.01404 5.11915 5.14519 5.24013 5.27131 5.31651 5.41132 5.46404 5.47891 5.74627 5.93164 6.19064 6.43461 6.49386 6.61579 7.05891 7.12844 7.23609 8.73676 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.001785 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.772166 B =15684.867040 C =17153.362675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.119 3.881 7 N -0.715 5.715 8 C 0.532 3.468 9 O -0.566 6.566 10 C -0.131 4.131 11 S -0.151 6.151 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.259 1.259 20 N -0.711 5.711 21 C 0.589 3.411 22 O -0.576 6.576 23 C -0.082 4.082 24 C -0.131 4.131 25 C -0.232 4.232 26 C 0.043 3.957 27 N -0.527 5.527 28 H 0.431 0.569 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.408 0.592 43 H 0.133 0.867 44 H 0.157 0.843 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.753 3.217 25.147 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.004 4.004 7 N -0.369 5.369 8 C 0.318 3.682 9 O -0.445 6.445 10 C -0.282 4.282 11 S 0.076 5.924 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.183 1.183 20 N -0.362 5.362 21 C 0.377 3.623 22 O -0.456 6.456 23 C -0.195 4.195 24 C -0.158 4.158 25 C -0.255 4.255 26 C -0.094 4.094 27 N -0.124 5.124 28 H 0.271 0.729 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.251 0.749 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.244 0.756 43 H 0.151 0.849 44 H 0.175 0.825 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.989 2.911 23.394 30.908 hybrid contribution 1.944 0.407 0.726 2.114 sum -18.045 3.318 24.119 30.305 Atomic orbital electron populations 1.22141 0.94511 1.02892 1.02310 1.20993 0.94419 0.96986 0.83474 0.90845 1.21778 0.94071 1.02495 0.97106 1.21717 0.96478 1.01153 0.96323 1.21445 0.78699 1.01066 0.99179 1.45798 1.08276 1.56674 1.26123 1.20047 0.88850 0.77875 0.81415 1.90689 1.70445 1.43354 1.39992 1.23387 0.94949 1.05815 1.04073 1.85556 1.05841 1.71694 1.29324 1.23200 0.91677 1.41231 1.13330 0.89959 1.26133 1.05233 0.93974 0.93875 1.70179 1.37389 1.34934 1.12196 0.84950 0.75836 0.79254 0.77924 1.19219 1.20321 1.18284 1.45884 1.67080 1.14179 1.09086 1.17264 0.76761 0.85758 0.82469 1.90822 1.52697 1.16862 1.85187 1.20277 1.16874 0.86033 0.96307 1.21521 1.02248 1.00145 0.91915 1.21212 1.10127 0.92887 1.01294 1.22700 1.01933 1.01603 0.83191 1.42013 1.49942 1.08432 1.11998 0.72931 0.94150 0.90249 0.91135 0.89242 0.88837 0.90978 0.90342 0.91830 0.92464 0.74859 0.87429 0.87188 0.91978 0.75582 0.84865 0.82533 0.77354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 71.98 0.68 -1.09 16 2 C 0.15 1.65 2.57 44.99 0.12 1.77 16 3 H 0.07 1.18 7.58 -2.39 -0.02 1.16 16 4 C -0.12 -0.95 4.75 30.59 0.15 -0.80 16 5 C -0.12 -1.30 5.21 30.59 0.16 -1.14 16 6 C 0.12 2.21 5.67 86.38 0.49 2.70 16 7 N -0.71 -16.56 5.56 -463.06 -2.57 -19.14 16 8 C 0.53 18.97 7.85 87.66 0.69 19.66 16 9 O -0.57 -25.61 15.86 -3.02 -0.05 -25.66 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.65 16 11 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 12 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 13 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 14 C 0.01 0.72 5.49 84.86 0.47 1.18 16 15 N -0.91 -55.63 13.22 21.65 0.29 -55.35 16 16 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 N -0.71 -7.75 4.53 -446.49 -2.02 -9.77 16 21 C 0.59 10.86 7.75 86.45 0.67 11.53 16 22 O -0.58 -15.68 16.55 -4.33 -0.07 -15.75 16 23 C -0.08 -1.29 7.06 40.35 0.28 -1.01 16 24 C -0.13 -2.30 10.65 22.57 0.24 -2.06 16 25 C -0.23 -2.79 10.81 22.01 0.24 -2.55 16 26 C 0.04 0.31 11.89 83.48 0.99 1.30 16 27 N -0.53 -4.13 5.99 -183.61 -1.10 -5.23 16 28 H 0.43 0.55 8.19 -92.71 -0.76 -0.21 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.72 7.75 -2.39 -0.02 0.70 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.41 6.96 8.47 -92.71 -0.79 6.18 16 39 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 40 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.41 1.97 7.73 -92.71 -0.72 1.26 16 43 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 44 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.21 -0.14 8.06 -2.90 -0.02 -0.16 16 Total: -1.00 -86.67 399.44 0.36 -86.31 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -1.24 Total: 14.28 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 6.26 Total: -5.52 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -5.41 Total: -89.49 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.12 Total: -41.41 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -86.67 0.36 -86.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572077683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.933 kcal (2) G-P(sol) polarization free energy of solvation -86.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds