Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47223 * 2 1 4 4 C 1.53000 * 109.47282 * 240.00477 * 2 1 3 5 5 C 1.53000 * 109.47165 * 175.00005 * 4 2 1 6 6 N 1.46500 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.34772 * 120.00222 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00172 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47075 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99882 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99715 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99852 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00252 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99682 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47277 * 60.00074 * 15 13 11 17 17 H 1.48500 * 109.46849 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47094 * 299.99919 * 15 13 11 19 19 N 1.46497 * 109.47236 * 120.00305 * 2 1 3 20 20 C 1.34781 * 119.99619 * 274.99953 * 19 2 1 21 21 O 1.21696 * 120.00216 * 354.41231 * 20 19 2 22 22 C 1.46673 * 119.99885 * 174.41158 * 20 19 2 23 23 C 1.37875 * 126.23329 * 4.72440 * 22 20 19 24 24 C 1.39834 * 107.08784 * 179.97438 * 23 22 20 25 25 C 1.35455 * 107.86292 * 359.97438 * 24 23 22 26 26 N 1.35534 * 108.87311 * 359.76943 * 25 24 23 27 27 C 1.46496 * 125.67772 * 180.25916 * 26 25 24 28 28 H 1.08997 * 109.46847 * 299.99712 * 1 2 3 29 29 H 1.09000 * 109.46840 * 60.00104 * 1 2 3 30 30 H 1.09006 * 109.46620 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47088 * 294.99535 * 4 2 1 32 32 H 1.09000 * 109.47216 * 54.99568 * 4 2 1 33 33 H 1.09003 * 109.46833 * 299.99252 * 5 4 2 34 34 H 1.09000 * 109.47410 * 59.99682 * 5 4 2 35 35 H 0.97002 * 119.99872 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.46557 * 299.99191 * 9 7 6 37 37 H 1.09000 * 109.47301 * 59.99385 * 9 7 6 38 38 H 0.96997 * 120.00512 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00710 * 95.00314 * 19 2 1 40 40 H 1.08005 * 126.45788 * 359.92064 * 23 22 20 41 41 H 1.07998 * 126.07090 * 180.02562 * 24 23 22 42 42 H 1.08008 * 125.56158 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.47354 * 270.87595 * 27 26 25 44 44 H 1.08998 * 109.47444 * 30.88275 * 27 26 25 45 45 H 1.09005 * 109.46823 * 150.87913 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0533 -1.3042 -2.5096 7 6 5.3742 -1.3405 -2.7747 8 8 6.1586 -0.8006 -2.0234 9 6 5.8766 -2.0508 -4.0052 10 16 7.6805 -1.9232 -4.0813 11 6 7.9876 -2.8131 -5.5707 12 1 7.1638 -3.2357 -6.1269 13 6 9.2880 -2.9700 -6.0298 14 7 10.2919 -2.4545 -5.3523 15 14 9.6135 -3.9128 -7.6093 16 1 8.9130 -3.2469 -8.7366 17 1 11.0735 -3.9369 -7.8794 18 1 9.1127 -5.3037 -7.4677 19 7 2.0184 -0.6907 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.9557 1.1831 2.3890 22 6 2.5178 -0.7345 3.5822 23 6 2.8519 -2.0689 3.6766 24 6 3.1336 -2.3277 5.0216 25 6 2.9709 -1.1725 5.7100 26 7 2.6021 -0.1955 4.8460 27 6 2.3343 1.2008 5.1989 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7518 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4372 -1.3574 34 1 3.9995 -1.0727 -0.4260 35 1 3.4261 -1.7363 -3.1102 36 1 5.5879 -3.1010 -3.9617 37 1 5.4424 -1.5910 -4.8929 38 1 11.2007 -2.5638 -5.6733 39 1 2.2491 -1.6317 1.1526 40 1 2.8883 -2.7804 2.8649 41 1 3.4293 -3.2795 5.4376 42 1 3.1150 -1.0493 6.7733 43 1 1.2829 1.3137 5.4630 44 1 2.9550 1.4864 6.0483 45 1 2.5661 1.8415 4.3480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580300078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -34.189248 kcal Electronic energy + Delta-G solvation = -25828.843795 eV Core-core repulsion = 21973.204323 eV Total energy + Delta-G solvation = -3855.639472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66037 -39.72825 -39.05412 -36.77713 -34.50426 -33.27732 -32.42345 -32.01261 -30.22071 -29.16038 -28.13493 -26.78941 -25.48789 -24.02203 -22.92065 -21.40515 -20.71882 -20.33019 -19.89135 -18.20111 -17.80390 -16.75296 -16.30791 -16.10965 -15.82909 -15.77571 -15.33673 -14.84377 -14.79707 -14.44690 -14.03013 -13.94953 -13.81837 -13.67346 -13.56451 -13.20841 -12.95957 -12.68941 -12.58566 -12.56166 -12.38992 -12.26415 -12.16404 -11.65216 -11.53401 -11.27213 -11.04114 -11.03435 -10.76339 -10.23296 -9.82155 -9.50658 -9.36855 -9.05917 -9.04494 -8.88774 -8.52078 -8.23143 -6.49487 -6.20841 -3.91619 1.18190 2.31439 2.45198 3.02661 3.04789 3.10839 3.12928 3.23787 3.27782 3.31102 3.69073 4.21043 4.36870 4.48705 4.51455 4.58544 4.68605 4.73855 4.89760 5.05356 5.07968 5.08543 5.11906 5.14045 5.22533 5.29569 5.30632 5.37205 5.57911 5.63380 5.73567 5.76263 5.83178 5.88865 5.90165 5.94161 6.13816 6.16143 6.44383 6.60108 6.67741 6.88547 7.18741 7.59629 7.70198 7.90397 8.35507 8.62136 9.24112 10.86507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.001888 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.183769 B =14825.300813 C =15780.421576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.096 0.904 4 C -0.139 4.139 5 C 0.120 3.880 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.714 5.714 20 C 0.594 3.406 21 O -0.550 6.550 22 C -0.056 4.056 23 C -0.138 4.138 24 C -0.207 4.207 25 C 0.014 3.986 26 N -0.411 5.411 27 C 0.063 3.937 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.404 0.596 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.169 0.831 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.421 2.129 18.542 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.114 0.886 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.366 5.366 20 C 0.382 3.618 21 O -0.429 6.429 22 C -0.169 4.169 23 C -0.165 4.165 24 C -0.231 4.231 25 C -0.122 4.122 26 N -0.084 5.084 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.239 0.761 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.135 4.336 19.897 30.077 hybrid contribution -0.855 -1.967 -2.068 2.979 sum -22.991 2.369 17.829 29.190 Atomic orbital electron populations 1.22173 0.94689 1.02394 1.02765 1.20915 0.94096 0.97919 0.82784 0.88643 1.22129 0.95517 1.02003 0.98123 1.21263 0.92559 0.98058 0.88514 1.45994 1.07822 1.58587 1.27103 1.20325 0.81490 0.79747 0.86817 1.90716 1.54950 1.44294 1.49055 1.23530 1.06865 1.02533 0.97455 1.85423 0.92180 1.72654 1.33129 1.22827 0.95443 1.40223 1.09947 0.90975 1.24998 0.95053 0.95661 0.97904 1.70006 0.99411 1.42537 1.38318 0.86221 0.77362 0.79934 0.81959 1.19952 1.20819 1.19935 1.45731 1.67529 1.14301 1.09023 1.16958 0.76320 0.86092 0.82414 1.90770 1.52022 1.14071 1.86084 1.20027 1.17004 0.93886 0.86009 1.21379 1.03931 0.93408 0.97757 1.20853 1.10129 0.98424 0.93675 1.22057 1.05876 0.88069 0.96151 1.43852 1.49258 1.09251 1.05990 1.22311 1.02310 0.79338 1.03802 0.92062 0.91240 0.92207 0.90422 0.89281 0.91527 0.91564 0.76856 0.89233 0.89238 0.92120 0.76106 0.83847 0.83895 0.81413 0.90756 0.89909 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.15 1.14 2.62 -67.93 -0.18 0.97 16 3 H 0.10 0.93 7.50 -51.93 -0.39 0.54 16 4 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 5 C 0.12 1.33 5.56 -4.04 -0.02 1.31 16 6 N -0.74 -9.38 5.56 -60.29 -0.33 -9.72 16 7 C 0.53 9.84 7.85 -10.99 -0.09 9.76 16 8 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 9 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 15 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.71 -6.01 4.51 -55.11 -0.25 -6.26 16 20 C 0.59 6.59 7.74 -12.85 -0.10 6.49 16 21 O -0.55 -7.47 14.26 5.19 0.07 -7.39 16 22 C -0.06 -0.59 6.89 -81.98 -0.56 -1.15 16 23 C -0.14 -1.26 10.36 -39.12 -0.41 -1.67 16 24 C -0.21 -1.74 10.81 -39.98 -0.43 -2.17 16 25 C 0.01 0.11 11.38 -16.91 -0.19 -0.08 16 26 N -0.41 -3.86 3.16 -120.23 -0.38 -4.24 16 27 C 0.06 0.46 10.65 59.84 0.64 1.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 35 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 36 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 39 H 0.40 2.68 7.50 -40.82 -0.31 2.38 16 40 H 0.14 1.00 7.45 -52.48 -0.39 0.61 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.11 0.99 6.19 -51.93 -0.32 0.67 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -37.91 395.90 -8.81 -46.72 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.77 Total: 2.80 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.70 Total: -3.05 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.23 Total: -45.73 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.16 Total: -19.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.91 -8.81 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580300078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.531 kcal (2) G-P(sol) polarization free energy of solvation -37.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds