Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47223 * 2 1 4 4 C 1.53000 * 109.47282 * 240.00477 * 2 1 3 5 5 C 1.53000 * 109.47165 * 175.00005 * 4 2 1 6 6 N 1.46500 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.34772 * 120.00222 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00172 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47075 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99882 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99715 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99852 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00252 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99682 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47277 * 60.00074 * 15 13 11 17 17 H 1.48500 * 109.46849 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47094 * 299.99919 * 15 13 11 19 19 N 1.46497 * 109.47236 * 120.00305 * 2 1 3 20 20 C 1.34781 * 119.99619 * 274.99953 * 19 2 1 21 21 O 1.21696 * 120.00216 * 354.41231 * 20 19 2 22 22 C 1.46673 * 119.99885 * 174.41158 * 20 19 2 23 23 C 1.37875 * 126.23329 * 4.72440 * 22 20 19 24 24 C 1.39834 * 107.08784 * 179.97438 * 23 22 20 25 25 C 1.35455 * 107.86292 * 359.97438 * 24 23 22 26 26 N 1.35534 * 108.87311 * 359.76943 * 25 24 23 27 27 C 1.46496 * 125.67772 * 180.25916 * 26 25 24 28 28 H 1.08997 * 109.46847 * 299.99712 * 1 2 3 29 29 H 1.09000 * 109.46840 * 60.00104 * 1 2 3 30 30 H 1.09006 * 109.46620 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47088 * 294.99535 * 4 2 1 32 32 H 1.09000 * 109.47216 * 54.99568 * 4 2 1 33 33 H 1.09003 * 109.46833 * 299.99252 * 5 4 2 34 34 H 1.09000 * 109.47410 * 59.99682 * 5 4 2 35 35 H 0.97002 * 119.99872 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.46557 * 299.99191 * 9 7 6 37 37 H 1.09000 * 109.47301 * 59.99385 * 9 7 6 38 38 H 0.96997 * 120.00512 * 180.02562 * 14 13 11 39 39 H 0.96994 * 120.00710 * 95.00314 * 19 2 1 40 40 H 1.08005 * 126.45788 * 359.92064 * 23 22 20 41 41 H 1.07998 * 126.07090 * 180.02562 * 24 23 22 42 42 H 1.08008 * 125.56158 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.47354 * 270.87595 * 27 26 25 44 44 H 1.08998 * 109.47444 * 30.88275 * 27 26 25 45 45 H 1.09005 * 109.46823 * 150.87913 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0533 -1.3042 -2.5096 7 6 5.3742 -1.3405 -2.7747 8 8 6.1586 -0.8006 -2.0234 9 6 5.8766 -2.0508 -4.0052 10 16 7.6805 -1.9232 -4.0813 11 6 7.9876 -2.8131 -5.5707 12 1 7.1638 -3.2357 -6.1269 13 6 9.2880 -2.9700 -6.0298 14 7 10.2919 -2.4545 -5.3523 15 14 9.6135 -3.9128 -7.6093 16 1 8.9130 -3.2469 -8.7366 17 1 11.0735 -3.9369 -7.8794 18 1 9.1127 -5.3037 -7.4677 19 7 2.0184 -0.6907 1.1961 20 6 2.1471 -0.0183 2.3571 21 8 1.9557 1.1831 2.3890 22 6 2.5178 -0.7345 3.5822 23 6 2.8519 -2.0689 3.6766 24 6 3.1336 -2.3277 5.0216 25 6 2.9709 -1.1725 5.7100 26 7 2.6021 -0.1955 4.8460 27 6 2.3343 1.2008 5.1989 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7518 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4372 -1.3574 34 1 3.9995 -1.0727 -0.4260 35 1 3.4261 -1.7363 -3.1102 36 1 5.5879 -3.1010 -3.9617 37 1 5.4424 -1.5910 -4.8929 38 1 11.2007 -2.5638 -5.6733 39 1 2.2491 -1.6317 1.1526 40 1 2.8883 -2.7804 2.8649 41 1 3.4293 -3.2795 5.4376 42 1 3.1150 -1.0493 6.7733 43 1 1.2829 1.3137 5.4630 44 1 2.9550 1.4864 6.0483 45 1 2.5661 1.8415 4.3480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580300078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -61.587983 kcal Electronic energy + Delta-G solvation = -25830.031893 eV Core-core repulsion = 21973.204323 eV Total energy + Delta-G solvation = -3856.827570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32189 -40.72677 -40.23668 -37.65087 -35.64201 -34.57466 -33.95468 -32.82962 -31.44731 -29.87488 -29.18299 -27.64214 -27.38921 -24.82198 -23.73696 -22.17260 -21.69642 -21.27658 -20.64757 -19.82084 -18.84072 -17.77496 -17.50571 -17.24184 -16.86819 -16.69275 -16.66024 -16.39849 -15.83575 -15.52032 -15.33633 -14.93193 -14.76483 -14.50482 -14.45644 -14.33531 -14.15090 -13.64504 -13.54591 -13.28215 -13.17882 -13.16090 -13.00498 -12.86897 -12.85641 -12.65786 -12.42865 -12.40256 -11.94193 -11.73134 -11.11894 -11.06717 -10.96106 -10.26668 -10.24505 -10.08720 -9.69427 -9.18225 -8.66320 -8.33451 -6.11965 0.46394 1.27920 1.44987 1.48053 1.57637 1.62225 1.69237 1.81730 2.26328 2.30334 2.36438 2.40019 3.00504 3.32968 3.67646 3.77999 3.86605 3.96984 4.04214 4.09447 4.18296 4.32262 4.35437 4.42968 4.46739 4.47022 4.52737 4.54069 4.62456 4.70060 4.81904 4.88745 5.01963 5.11684 5.15939 5.26691 5.30660 5.42426 5.43637 5.49393 5.80620 6.01467 6.20634 6.30333 6.49037 6.53791 7.07506 7.15187 7.27236 8.75515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.001888 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.183769 B =14825.300813 C =15780.421576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.709 5.709 7 C 0.530 3.470 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.545 4.545 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 N -0.705 5.705 20 C 0.586 3.414 21 O -0.586 6.586 22 C -0.092 4.092 23 C -0.140 4.140 24 C -0.224 4.224 25 C 0.020 3.980 26 N -0.422 5.422 27 C 0.063 3.937 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.420 0.580 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.201 0.799 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.714 0.143 17.724 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.316 3.684 8 O -0.448 6.448 9 C -0.279 4.279 10 S 0.069 5.931 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.185 1.185 19 N -0.357 5.357 20 C 0.376 3.624 21 O -0.468 6.468 22 C -0.205 4.205 23 C -0.166 4.166 24 C -0.247 4.247 25 C -0.116 4.116 26 N -0.095 5.095 27 C -0.078 4.078 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.257 0.743 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.177 0.823 41 H 0.179 0.821 42 H 0.218 0.782 43 H 0.101 0.899 44 H 0.128 0.872 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.507 2.315 19.051 31.127 hybrid contribution -0.242 -1.329 -1.704 2.175 sum -24.749 0.986 17.347 30.239 Atomic orbital electron populations 1.22099 0.93195 1.03345 1.02544 1.20949 0.95128 0.96806 0.82901 0.91150 1.22050 0.91742 1.03843 0.98313 1.21362 0.95577 0.96393 0.87092 1.45680 1.05996 1.57162 1.27524 1.20140 0.83016 0.79294 0.85932 1.90708 1.56795 1.46753 1.50592 1.23367 1.00806 1.04509 0.99228 1.85647 0.99963 1.73363 1.34080 1.23175 0.96208 1.40060 1.09858 0.89717 1.26162 0.94710 0.96579 1.01895 1.70184 0.99931 1.44228 1.40531 0.84988 0.77309 0.78675 0.76923 1.18628 1.20550 1.18507 1.45717 1.66708 1.14657 1.08570 1.17226 0.76041 0.85826 0.83336 1.90743 1.53917 1.15497 1.86691 1.20177 1.19179 0.94695 0.86433 1.21709 1.02967 0.93134 0.98833 1.21209 1.10501 0.99535 0.93491 1.22679 1.03956 0.87496 0.97457 1.44116 1.49300 1.10073 1.05988 1.22358 1.03443 0.78328 1.03627 0.94123 0.89650 0.90585 0.87638 0.87043 0.93641 0.92776 0.74255 0.86876 0.87069 0.92034 0.74991 0.82299 0.82098 0.78198 0.89927 0.87232 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.48 71.98 0.68 -1.07 16 2 C 0.15 2.13 2.62 44.99 0.12 2.25 16 3 H 0.07 1.41 7.50 -2.38 -0.02 1.39 16 4 C -0.12 -1.30 4.87 30.59 0.15 -1.15 16 5 C 0.12 2.51 5.56 86.38 0.48 2.99 16 6 N -0.71 -16.37 5.56 -463.05 -2.57 -18.94 16 7 C 0.53 19.29 7.85 87.66 0.69 19.98 16 8 O -0.57 -26.94 15.86 -3.05 -0.05 -26.99 16 9 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 10 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 11 C -0.55 -31.00 9.50 67.96 0.65 -30.35 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.63 5.49 84.86 0.47 1.10 16 14 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 15 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 19 N -0.70 -11.67 4.51 -446.49 -2.02 -13.68 16 20 C 0.59 13.57 7.74 86.44 0.67 14.24 16 21 O -0.59 -17.03 14.26 -4.34 -0.06 -17.09 16 22 C -0.09 -1.97 6.89 40.35 0.28 -1.69 16 23 C -0.14 -2.47 10.36 22.57 0.23 -2.23 16 24 C -0.22 -3.46 10.81 22.01 0.24 -3.22 16 25 C 0.02 0.28 11.38 83.48 0.95 1.23 16 26 N -0.42 -7.83 3.16 -534.31 -1.69 -9.52 16 27 C 0.06 0.93 10.65 127.77 1.36 2.29 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.63 8.14 -2.38 -0.02 0.62 16 31 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.30 7.75 -2.39 -0.02 1.29 16 35 H 0.42 6.16 8.47 -92.71 -0.79 5.37 16 36 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 37 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.41 5.05 7.50 -92.71 -0.70 4.35 16 40 H 0.16 2.06 7.45 -2.91 -0.02 2.04 16 41 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.64 6.19 -2.38 -0.01 1.62 16 Total: -1.00 -87.46 395.90 1.69 -85.77 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.47 Total: 21.19 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 7.40 Total: -0.14 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -5.99 Total: -98.20 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.11 Total: -44.08 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -87.46 1.69 -85.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580300078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.179 kcal (2) G-P(sol) polarization free energy of solvation -87.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds