Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35961 * 117.00287 * 2 1 4 4 C 1.37569 * 120.82952 * 180.29152 * 3 2 1 5 5 C 1.38038 * 114.25050 * 180.21286 * 4 3 2 6 6 C 1.47115 * 127.75816 * 179.80420 * 5 4 3 7 7 O 1.21633 * 119.99858 * 13.17012 * 6 5 4 8 8 N 1.34775 * 119.99913 * 193.17760 * 6 5 4 9 9 C 1.46925 * 120.63280 * 9.00793 * 8 6 5 10 10 C 1.53190 * 108.77479 * 126.39347 * 9 8 6 11 11 C 1.53040 * 109.31208 * 54.63974 * 10 9 8 12 12 C 1.53048 * 109.53669 * 298.63184 * 11 10 9 13 13 C 1.46931 * 120.62779 * 189.01622 * 8 6 5 14 14 H 1.08993 * 109.70430 * 113.74841 * 13 8 6 15 15 C 1.52995 * 109.58955 * 353.38996 * 13 8 6 16 16 H 1.09007 * 109.46818 * 311.05660 * 15 13 8 17 17 C 1.53003 * 109.47271 * 191.05929 * 15 13 8 18 18 N 1.46494 * 109.47276 * 71.05289 * 15 13 8 19 19 C 1.36934 * 120.00150 * 191.99449 * 18 15 13 20 20 H 1.07997 * 120.00457 * 0.02562 * 19 18 15 21 21 C 1.38813 * 120.00214 * 179.72602 * 19 18 15 22 22 N 1.31624 * 119.99414 * 0.27920 * 21 19 18 23 23 Si 1.86796 * 120.00300 * 180.27834 * 21 19 18 24 24 H 1.48495 * 109.47248 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47231 * 120.00343 * 23 21 19 26 26 H 1.48502 * 109.47123 * 240.00193 * 23 21 19 27 27 S 1.77231 * 104.48086 * 359.54690 * 5 4 3 28 28 N 1.30365 * 120.82436 * 359.97196 * 3 2 1 29 29 H 1.09001 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47060 * 300.00023 * 1 2 3 31 31 H 1.08996 * 109.46765 * 60.00088 * 1 2 3 32 32 H 1.08002 * 122.87138 * 0.04195 * 4 3 2 33 33 H 1.09003 * 109.58436 * 6.60964 * 9 8 6 34 34 H 1.08998 * 109.58665 * 246.18357 * 9 8 6 35 35 H 1.08995 * 109.50076 * 294.68313 * 10 9 8 36 36 H 1.09006 * 109.52167 * 174.60263 * 10 9 8 37 37 H 1.09001 * 109.45931 * 178.61286 * 11 10 9 38 38 H 1.09002 * 109.46248 * 58.65141 * 11 10 9 39 39 H 1.08993 * 109.49789 * 301.41578 * 12 11 10 40 40 H 1.08999 * 109.52375 * 181.33250 * 12 11 10 41 41 H 1.08993 * 109.47245 * 59.99840 * 17 15 13 42 42 H 1.08999 * 109.47013 * 180.02562 * 17 15 13 43 43 H 1.09002 * 109.46595 * 299.99842 * 17 15 13 44 44 H 0.97003 * 120.00068 * 12.00312 * 18 15 13 45 45 H 0.97004 * 119.99874 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3032 -0.0060 5 6 3.9007 2.5968 -0.0005 6 6 5.3050 3.0351 -0.0006 7 8 6.1907 2.2383 -0.2459 8 7 5.6101 4.3194 0.2712 9 6 4.5802 5.2462 0.7601 10 6 5.0759 5.8948 2.0564 11 6 6.4392 6.5444 1.8082 12 6 7.4478 5.4728 1.3879 13 6 6.9790 4.8194 0.0840 14 1 6.9947 5.5554 -0.7198 15 6 7.9066 3.6550 -0.2687 16 1 7.7493 2.8387 0.4365 17 6 9.3619 4.1212 -0.1927 18 7 7.6128 3.1904 -1.6266 19 6 8.1385 2.0080 -2.0745 20 1 8.7693 1.4176 -1.4266 21 6 7.8554 1.5650 -3.3592 22 7 7.0863 2.2844 -4.1488 23 14 8.5661 -0.0518 -3.9676 24 1 9.3911 -0.6644 -2.8956 25 1 7.4597 -0.9743 -4.3283 26 1 9.4121 0.1977 -5.1623 27 16 2.4472 3.6110 -0.0010 28 7 1.3522 2.3149 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0644 0.4373 -0.0116 33 1 3.6583 4.6982 0.9550 34 1 4.3979 6.0176 0.0120 35 1 5.1711 5.1337 2.8308 36 1 4.3641 6.6548 2.3788 37 1 6.7829 7.0279 2.7226 38 1 6.3484 7.2880 1.0165 39 1 7.5207 4.7156 2.1685 40 1 8.4243 5.9320 1.2341 41 1 9.5805 4.4667 0.8176 42 1 10.0228 3.2917 -0.4444 43 1 9.5192 4.9374 -0.8979 44 1 7.0460 3.7206 -2.2085 45 1 6.8888 1.9751 -5.0467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660442283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = 35.025123 kcal Electronic energy + Delta-G solvation = -28808.527724 eV Core-core repulsion = 24955.889613 eV Total energy + Delta-G solvation = -3852.638111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.35224 -39.88485 -37.21462 -36.16745 -35.33087 -32.86035 -32.32800 -30.87697 -29.98454 -28.04382 -27.87801 -25.82361 -24.40256 -23.98103 -22.82294 -21.55144 -20.34574 -20.06899 -18.87949 -18.09959 -17.49724 -16.79054 -16.16101 -15.95513 -15.65653 -15.11180 -14.84554 -14.64782 -14.48432 -14.09634 -13.82623 -13.57374 -13.36424 -13.09563 -12.97313 -12.91041 -12.51537 -12.26439 -12.05886 -11.98618 -11.47059 -11.41260 -11.19873 -11.17435 -10.96353 -10.89594 -10.74831 -10.70872 -10.58259 -10.25647 -10.11603 -9.78491 -9.53276 -9.42849 -8.84031 -8.46934 -8.20786 -8.14300 -6.67220 -5.62215 -2.78391 0.39336 1.35842 1.71733 2.47702 2.96140 3.42720 3.52238 3.58595 3.60300 3.60348 4.58556 4.69308 4.74470 4.86836 4.92509 5.06270 5.11078 5.14511 5.17996 5.33267 5.42094 5.43616 5.53405 5.57048 5.68635 5.73324 5.79346 5.84634 5.89689 5.99590 6.04564 6.06625 6.09158 6.25877 6.31877 6.40246 6.42011 6.70648 6.81232 7.01148 7.13530 7.33175 7.73267 7.86586 8.54884 8.68800 9.66605 10.22245 10.56995 11.61127 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.005730 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.819455 B = 4885.723623 C = 7701.703401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.299 6.299 3 C 0.311 3.689 4 C -0.146 4.146 5 C -0.153 4.153 6 C 0.555 3.445 7 O -0.418 6.418 8 N -0.609 5.609 9 C 0.102 3.898 10 C -0.130 4.130 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.151 3.849 14 H 0.071 0.929 15 C 0.170 3.830 16 H 0.073 0.927 17 C -0.169 4.169 18 N -0.692 5.692 19 C -0.187 4.187 20 H 0.068 0.932 21 C -0.025 4.025 22 N -0.935 5.935 23 Si 0.901 3.099 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.296 1.296 27 S 0.265 5.735 28 N -0.546 5.546 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.174 0.826 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.378 0.622 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 7.435 14.212 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.205 6.205 3 C 0.098 3.902 4 C -0.182 4.182 5 C -0.285 4.285 6 C 0.338 3.662 7 O -0.286 6.286 8 N -0.346 5.346 9 C -0.024 4.024 10 C -0.168 4.168 11 C -0.157 4.157 12 C -0.168 4.168 13 C 0.048 3.952 14 H 0.089 0.911 15 C 0.061 3.939 16 H 0.091 0.909 17 C -0.229 4.229 18 N -0.332 5.332 19 C -0.319 4.319 20 H 0.086 0.914 21 C -0.219 4.219 22 N -0.586 5.586 23 Si 0.734 3.266 24 H -0.207 1.207 25 H -0.222 1.222 26 H -0.223 1.223 27 S 0.415 5.585 28 N -0.385 5.385 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.191 0.809 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.145 8.040 14.018 19.081 hybrid contribution 0.623 -2.053 -0.813 2.294 sum -9.523 5.987 13.205 17.347 Atomic orbital electron populations 1.22902 0.77246 1.03181 1.02310 1.86301 1.22589 1.23253 1.88330 1.19882 0.89768 0.85063 0.95511 1.20683 0.92230 0.98828 1.06483 1.26319 0.99229 0.96960 1.06017 1.16703 0.85113 0.83119 0.81219 1.91164 1.44126 1.51913 1.41385 1.47591 1.10188 1.08926 1.67931 1.22010 0.90498 0.93471 0.96444 1.21878 0.97629 1.00210 0.97117 1.21534 0.94790 0.97957 1.01396 1.22034 0.98924 0.98184 0.97628 1.21551 0.80217 0.97101 0.96330 0.91092 1.20691 0.89960 0.92808 0.90488 0.90949 1.22567 1.00235 1.01269 0.98854 1.42431 1.58023 1.23524 1.09190 1.19169 1.20755 0.96586 0.95412 0.91363 1.24633 1.01290 0.98797 0.97205 1.69658 1.41960 1.38798 1.08174 0.86162 0.78059 0.84094 0.78293 1.20728 1.22224 1.22329 1.84840 0.90492 1.12152 1.71049 1.76309 1.28484 1.01957 1.31785 0.88356 0.92409 0.92302 0.80858 0.90449 0.90849 0.91391 0.90784 0.91790 0.91722 0.91404 0.90267 0.94202 0.92559 0.93673 0.78832 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.43 101.05 1.05 1.48 16 2 O -0.30 -4.43 10.51 -19.62 -0.21 -4.63 16 3 C 0.31 5.03 7.36 -18.42 -0.14 4.90 16 4 C -0.15 -2.51 10.12 -39.90 -0.40 -2.91 16 5 C -0.15 -2.62 6.35 -36.05 -0.23 -2.85 16 6 C 0.56 10.45 7.33 -12.66 -0.09 10.35 16 7 O -0.42 -9.57 10.33 5.25 0.05 -9.51 16 8 N -0.61 -9.45 2.97 -166.60 -0.50 -9.95 16 9 C 0.10 1.19 5.64 -3.71 -0.02 1.17 16 10 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 11 C -0.12 -1.12 5.88 -26.69 -0.16 -1.27 16 12 C -0.13 -1.52 4.49 -26.61 -0.12 -1.64 16 13 C 0.15 2.35 2.58 -67.60 -0.17 2.18 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C 0.17 3.33 1.82 -67.93 -0.12 3.21 16 16 H 0.07 1.57 6.07 -51.95 -0.32 1.26 16 17 C -0.17 -2.97 8.67 37.16 0.32 -2.65 16 18 N -0.69 -17.14 3.33 -53.43 -0.18 -17.32 16 19 C -0.19 -5.23 8.44 -15.06 -0.13 -5.36 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 22 N -0.94 -28.81 13.06 55.49 0.72 -28.09 16 23 Si 0.90 23.35 29.55 -169.99 -5.02 18.33 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 26 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 27 S 0.27 3.77 19.72 -107.50 -2.12 1.65 16 28 N -0.55 -8.56 11.03 29.19 0.32 -8.24 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.17 2.99 8.06 -52.49 -0.42 2.57 16 33 H 0.08 0.91 3.34 -20.53 -0.07 0.84 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.87 6.69 -51.93 -0.35 0.53 16 41 H 0.04 0.57 6.44 -51.93 -0.33 0.23 16 42 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.38 10.14 7.70 -40.82 -0.31 9.83 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -33.01 364.45 -8.31 -41.31 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.41 Total: 6.53 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.46 Total: 4.42 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.37 Total: -63.59 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.15 Total: -14.14 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.12 Total: 1.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.01 -8.31 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660442283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.337 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds