Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35961 * 117.00287 * 2 1 4 4 C 1.37569 * 120.82952 * 180.29152 * 3 2 1 5 5 C 1.38038 * 114.25050 * 180.21286 * 4 3 2 6 6 C 1.47115 * 127.75816 * 179.80420 * 5 4 3 7 7 O 1.21633 * 119.99858 * 13.17012 * 6 5 4 8 8 N 1.34775 * 119.99913 * 193.17760 * 6 5 4 9 9 C 1.46925 * 120.63280 * 9.00793 * 8 6 5 10 10 C 1.53190 * 108.77479 * 126.39347 * 9 8 6 11 11 C 1.53040 * 109.31208 * 54.63974 * 10 9 8 12 12 C 1.53048 * 109.53669 * 298.63184 * 11 10 9 13 13 C 1.46931 * 120.62779 * 189.01622 * 8 6 5 14 14 H 1.08993 * 109.70430 * 113.74841 * 13 8 6 15 15 C 1.52995 * 109.58955 * 353.38996 * 13 8 6 16 16 H 1.09007 * 109.46818 * 311.05660 * 15 13 8 17 17 C 1.53003 * 109.47271 * 191.05929 * 15 13 8 18 18 N 1.46494 * 109.47276 * 71.05289 * 15 13 8 19 19 C 1.36934 * 120.00150 * 191.99449 * 18 15 13 20 20 H 1.07997 * 120.00457 * 0.02562 * 19 18 15 21 21 C 1.38813 * 120.00214 * 179.72602 * 19 18 15 22 22 N 1.31624 * 119.99414 * 0.27920 * 21 19 18 23 23 Si 1.86796 * 120.00300 * 180.27834 * 21 19 18 24 24 H 1.48495 * 109.47248 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47231 * 120.00343 * 23 21 19 26 26 H 1.48502 * 109.47123 * 240.00193 * 23 21 19 27 27 S 1.77231 * 104.48086 * 359.54690 * 5 4 3 28 28 N 1.30365 * 120.82436 * 359.97196 * 3 2 1 29 29 H 1.09001 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47060 * 300.00023 * 1 2 3 31 31 H 1.08996 * 109.46765 * 60.00088 * 1 2 3 32 32 H 1.08002 * 122.87138 * 0.04195 * 4 3 2 33 33 H 1.09003 * 109.58436 * 6.60964 * 9 8 6 34 34 H 1.08998 * 109.58665 * 246.18357 * 9 8 6 35 35 H 1.08995 * 109.50076 * 294.68313 * 10 9 8 36 36 H 1.09006 * 109.52167 * 174.60263 * 10 9 8 37 37 H 1.09001 * 109.45931 * 178.61286 * 11 10 9 38 38 H 1.09002 * 109.46248 * 58.65141 * 11 10 9 39 39 H 1.08993 * 109.49789 * 301.41578 * 12 11 10 40 40 H 1.08999 * 109.52375 * 181.33250 * 12 11 10 41 41 H 1.08993 * 109.47245 * 59.99840 * 17 15 13 42 42 H 1.08999 * 109.47013 * 180.02562 * 17 15 13 43 43 H 1.09002 * 109.46595 * 299.99842 * 17 15 13 44 44 H 0.97003 * 120.00068 * 12.00312 * 18 15 13 45 45 H 0.97004 * 119.99874 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3032 -0.0060 5 6 3.9007 2.5968 -0.0005 6 6 5.3050 3.0351 -0.0006 7 8 6.1907 2.2383 -0.2459 8 7 5.6101 4.3194 0.2712 9 6 4.5802 5.2462 0.7601 10 6 5.0759 5.8948 2.0564 11 6 6.4392 6.5444 1.8082 12 6 7.4478 5.4728 1.3879 13 6 6.9790 4.8194 0.0840 14 1 6.9947 5.5554 -0.7198 15 6 7.9066 3.6550 -0.2687 16 1 7.7493 2.8387 0.4365 17 6 9.3619 4.1212 -0.1927 18 7 7.6128 3.1904 -1.6266 19 6 8.1385 2.0080 -2.0745 20 1 8.7693 1.4176 -1.4266 21 6 7.8554 1.5650 -3.3592 22 7 7.0863 2.2844 -4.1488 23 14 8.5661 -0.0518 -3.9676 24 1 9.3911 -0.6644 -2.8956 25 1 7.4597 -0.9743 -4.3283 26 1 9.4121 0.1977 -5.1623 27 16 2.4472 3.6110 -0.0010 28 7 1.3522 2.3149 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0644 0.4373 -0.0116 33 1 3.6583 4.6982 0.9550 34 1 4.3979 6.0176 0.0120 35 1 5.1711 5.1337 2.8308 36 1 4.3641 6.6548 2.3788 37 1 6.7829 7.0279 2.7226 38 1 6.3484 7.2880 1.0165 39 1 7.5207 4.7156 2.1685 40 1 8.4243 5.9320 1.2341 41 1 9.5805 4.4667 0.8176 42 1 10.0228 3.2917 -0.4444 43 1 9.5192 4.9374 -0.8979 44 1 7.0460 3.7206 -2.2085 45 1 6.8888 1.9751 -5.0467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660442283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = 10.761997 kcal Electronic energy + Delta-G solvation = -28809.579852 eV Core-core repulsion = 24955.889613 eV Total energy + Delta-G solvation = -3853.690239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68200 -41.09084 -38.46352 -37.43627 -36.90187 -34.36633 -33.76570 -32.22078 -31.51770 -29.42226 -29.04278 -27.07865 -26.03778 -25.18918 -24.22350 -22.79718 -21.59657 -21.33047 -20.19775 -19.50964 -18.83124 -18.50018 -17.31357 -17.20541 -16.97072 -16.73191 -16.14892 -15.81448 -15.61980 -15.52630 -15.43738 -14.90480 -14.70823 -14.35194 -14.23816 -14.11609 -13.89724 -13.56552 -13.53124 -12.99964 -12.98803 -12.84145 -12.61960 -12.58883 -12.42063 -12.20637 -12.11015 -12.05170 -11.74492 -11.65192 -11.58023 -11.30572 -11.16132 -10.92367 -10.72770 -10.01029 -9.53287 -9.34433 -8.65425 -7.79624 -4.98242 -0.92443 0.05533 0.46774 1.15462 1.43509 1.45516 1.53803 1.72905 2.16944 2.28662 2.64490 3.36439 3.55355 3.68568 3.82631 3.89854 3.97910 4.08461 4.18220 4.29822 4.32026 4.33274 4.34591 4.40122 4.56864 4.57576 4.66013 4.67818 4.80429 4.89937 4.96057 5.02831 5.06623 5.12140 5.15240 5.23127 5.30961 5.47960 5.49372 5.56927 5.64476 5.87730 5.98181 6.40716 6.42922 7.26399 7.49441 8.27077 8.49020 9.45455 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.005730 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.819455 B = 4885.723623 C = 7701.703401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.312 6.312 3 C 0.306 3.694 4 C -0.153 4.153 5 C -0.179 4.179 6 C 0.557 3.443 7 O -0.474 6.474 8 N -0.603 5.603 9 C 0.094 3.906 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.122 4.122 13 C 0.153 3.847 14 H 0.069 0.931 15 C 0.168 3.832 16 H 0.050 0.950 17 C -0.158 4.158 18 N -0.705 5.705 19 C -0.172 4.172 20 H 0.059 0.941 21 C -0.089 4.089 22 N -0.977 5.977 23 Si 0.953 3.047 24 H -0.273 1.273 25 H -0.304 1.304 26 H -0.296 1.296 27 S 0.344 5.656 28 N -0.551 5.551 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.162 0.838 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.045 0.955 44 H 0.364 0.636 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 9.754 16.711 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.093 3.907 4 C -0.190 4.190 5 C -0.310 4.310 6 C 0.340 3.660 7 O -0.346 6.346 8 N -0.339 5.339 9 C -0.031 4.031 10 C -0.163 4.163 11 C -0.152 4.152 12 C -0.161 4.161 13 C 0.050 3.950 14 H 0.087 0.913 15 C 0.060 3.940 16 H 0.067 0.933 17 C -0.218 4.218 18 N -0.344 5.344 19 C -0.305 4.305 20 H 0.076 0.924 21 C -0.279 4.279 22 N -0.632 5.632 23 Si 0.786 3.214 24 H -0.198 1.198 25 H -0.233 1.233 26 H -0.224 1.224 27 S 0.495 5.505 28 N -0.391 5.391 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.180 0.820 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.195 0.805 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.749 10.405 16.598 22.843 hybrid contribution 0.831 -2.681 -1.332 3.107 sum -10.918 7.723 15.266 20.296 Atomic orbital electron populations 1.23216 0.75058 1.05405 1.02510 1.86297 1.24777 1.22634 1.88082 1.19743 0.89372 0.85706 0.95878 1.20784 0.93011 0.98850 1.06378 1.26342 1.00045 0.98202 1.06445 1.17103 0.85375 0.83804 0.79691 1.91153 1.45649 1.53633 1.44191 1.47766 1.11242 1.08429 1.66430 1.22362 0.89285 0.92996 0.98458 1.21900 0.98467 1.00758 0.95146 1.21541 0.93740 0.97068 1.02840 1.22006 1.00453 0.98710 0.94901 1.21537 0.79530 0.95278 0.98617 0.91289 1.20762 0.92082 0.93657 0.87523 0.93274 1.22422 0.98106 1.00191 1.01124 1.42422 1.58346 1.22630 1.11001 1.19277 1.19160 0.97240 0.94817 0.92350 1.25201 1.03088 1.01647 0.97938 1.69792 1.44970 1.40357 1.08073 0.85310 0.77120 0.81196 0.77817 1.19778 1.23253 1.22393 1.84547 0.87359 1.09904 1.68698 1.76222 1.29326 1.02501 1.31096 0.85265 0.91652 0.92528 0.82038 0.90592 0.89116 0.91759 0.87457 0.89251 0.90826 0.91811 0.88972 0.90360 0.95199 0.93620 0.80474 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.43 113.37 1.18 1.83 16 2 O -0.31 -8.99 10.51 -93.11 -0.98 -9.97 16 3 C 0.31 9.70 7.36 84.75 0.62 10.32 16 4 C -0.15 -5.35 10.12 22.06 0.22 -5.13 16 5 C -0.18 -6.09 6.35 24.55 0.16 -5.93 16 6 C 0.56 21.30 7.33 86.57 0.63 21.94 16 7 O -0.47 -22.80 10.33 -4.14 -0.04 -22.84 16 8 N -0.60 -18.10 2.97 -799.23 -2.38 -20.48 16 9 C 0.09 1.90 5.64 86.36 0.49 2.39 16 10 C -0.12 -1.76 6.08 30.67 0.19 -1.57 16 11 C -0.11 -1.61 5.88 30.62 0.18 -1.43 16 12 C -0.12 -2.52 4.49 30.68 0.14 -2.38 16 13 C 0.15 4.62 2.58 44.97 0.12 4.74 16 14 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.17 6.71 1.82 44.99 0.08 6.79 16 16 H 0.05 2.23 6.07 -2.73 -0.02 2.21 16 17 C -0.16 -5.55 8.67 71.98 0.62 -4.93 16 18 N -0.71 -36.48 3.33 -322.95 -1.08 -37.56 16 19 C -0.17 -10.08 8.44 84.03 0.71 -9.37 16 20 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 21 C -0.09 -5.43 5.50 84.86 0.47 -4.97 16 22 N -0.98 -63.14 13.06 21.65 0.28 -62.86 16 23 Si 0.95 50.27 29.55 68.60 2.03 52.30 16 24 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 S 0.34 9.00 19.72 -56.49 -1.11 7.88 16 28 N -0.55 -16.25 11.03 -175.20 -1.93 -18.19 16 29 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 32 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 33 H 0.08 1.54 3.34 -22.35 -0.07 1.47 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.69 6.69 -2.39 -0.02 1.68 16 41 H 0.08 2.10 6.44 -2.39 -0.02 2.08 16 42 H 0.03 1.17 7.95 -2.39 -0.02 1.15 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.36 20.42 7.70 -92.71 -0.71 19.70 16 45 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.06 364.45 0.84 -76.22 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.23 Total: 23.19 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.81 Total: 12.29 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -5.10 Total: -139.08 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.02 Total: -32.81 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.03 Total: 52.30 kcal Atomic # 16 Polarization: 9.00 SS G_CDS: -1.11 Total: 7.88 kcal Total: -77.06 0.84 -76.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660442283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.986 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds