Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46988 * 60.00440 * 14 12 10 16 16 H 1.48496 * 109.47065 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47452 * 300.00298 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 20 18 24 24 C 1.38422 * 122.53733 * 269.73848 * 23 22 20 25 25 C 1.33390 * 114.91881 * 179.76096 * 24 23 22 26 26 S 1.75881 * 109.59457 * 0.47131 * 25 24 23 27 27 C 1.33383 * 122.54004 * 90.02156 * 23 22 20 28 28 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 29 29 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 31 31 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 32 32 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 33 33 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 34 34 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 35 35 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 36 36 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 37 37 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 39 39 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 40 40 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 41 41 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 42 42 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 43 43 H 1.08001 * 122.54006 * 359.97438 * 24 23 22 44 44 H 1.08001 * 125.20140 * 180.21125 * 25 24 23 45 45 H 1.08001 * 125.20190 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.5626 -3.7634 -2.8511 16 1 10.7200 -3.7019 -5.2699 17 1 10.7609 -1.6366 -3.9991 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1328 0.2011 4.1341 24 6 5.5001 0.3276 3.9595 25 6 6.0898 1.2138 4.7634 26 16 4.8883 1.9404 5.8225 27 6 3.6138 0.9770 5.0869 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7517 -0.1582 -2.1369 32 1 1.6055 -1.7198 -1.2952 33 1 3.9280 0.0827 -1.0823 34 1 3.6097 -2.5197 -2.4295 35 1 3.7558 -0.9586 -3.2720 36 1 5.7757 -2.5718 -4.0324 37 1 8.2105 -3.8280 -5.9387 38 1 2.4159 -2.7376 0.9716 39 1 1.6238 -2.2853 2.5001 40 1 0.6905 -2.3002 0.9846 41 1 2.4470 -1.0881 3.9073 42 1 3.9004 -1.6025 3.0177 43 1 6.0475 -0.2453 3.2255 44 1 7.1445 1.4462 4.7665 45 1 2.5705 1.0085 5.3645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666849311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -31.279219 kcal Electronic energy + Delta-G solvation = -27050.931162 eV Core-core repulsion = 23195.417878 eV Total energy + Delta-G solvation = -3855.513283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14207 -38.35770 -37.93010 -36.51935 -34.63933 -33.77153 -32.18342 -31.18920 -30.64731 -27.95087 -27.57992 -26.86177 -24.97970 -23.57162 -23.07363 -21.42284 -19.46282 -19.02318 -18.53650 -17.85625 -17.57032 -17.25107 -16.42858 -15.85024 -15.61598 -15.23528 -14.95252 -14.53188 -14.34164 -13.94698 -13.69531 -13.59689 -13.39523 -13.17595 -13.01481 -12.75705 -12.62636 -12.59772 -12.39883 -12.22323 -12.01940 -11.94270 -11.73833 -11.60399 -11.47565 -11.39606 -11.00658 -10.87468 -10.78029 -10.43434 -10.20142 -9.67136 -9.48362 -8.75445 -8.58588 -8.38367 -8.34866 -8.01484 -7.93666 -6.40416 -3.81077 1.04122 1.68736 1.98902 2.64208 2.82885 3.18982 3.21033 3.26338 3.31041 3.93357 4.09947 4.31827 4.67253 4.80076 4.87395 4.94000 5.02304 5.09054 5.12942 5.21066 5.22272 5.27799 5.38512 5.40731 5.47479 5.52027 5.53953 5.58768 5.71681 5.80734 5.80937 5.90154 5.98987 6.03477 6.09907 6.28245 6.40031 6.50590 6.59974 7.25148 7.48014 7.56253 7.69201 8.07881 8.35423 8.63337 9.19551 9.56162 10.08189 10.77411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.002902 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.577720 B = 9645.561829 C =12046.138109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.048 3.952 5 N -0.662 5.662 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.580 6.580 9 N -0.565 5.565 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.595 5.595 19 C 0.078 3.922 20 C 0.525 3.475 21 O -0.534 6.534 22 C -0.080 4.080 23 C -0.076 4.076 24 C -0.116 4.116 25 C -0.210 4.210 26 S 0.078 5.922 27 C -0.204 4.204 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.351 0.649 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.163 0.837 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 3.511 15.734 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.117 0.883 4 C -0.082 4.082 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.464 6.464 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.328 5.328 19 C -0.065 4.065 20 C 0.313 3.687 21 O -0.411 6.411 22 C -0.123 4.123 23 C -0.089 4.089 24 C -0.146 4.146 25 C -0.345 4.345 26 S 0.341 5.659 27 C -0.339 4.339 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.162 0.838 44 H 0.181 0.819 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.198 4.878 17.659 23.804 hybrid contribution 0.486 -0.892 -2.533 2.729 sum -14.712 3.986 15.127 21.475 Atomic orbital electron populations 1.22089 0.94815 1.02309 1.02473 1.21052 0.93338 0.98044 0.84160 0.88307 1.22349 0.89709 1.00394 0.95771 1.60011 1.03032 1.26912 1.39528 1.21665 0.95270 0.99725 0.91465 1.19820 0.88036 0.84475 0.85000 1.90536 1.71100 1.51626 1.33153 1.41858 1.07362 1.51112 1.19857 1.19650 0.81559 1.35115 1.06507 0.88028 1.25248 1.00641 0.96801 0.95234 1.69603 1.36757 1.38689 1.09431 0.85928 0.82199 0.78599 0.77565 1.19887 1.20986 1.19914 1.47521 1.51007 1.12166 1.22150 1.21754 1.01170 0.82170 1.01394 1.20336 0.77500 0.86839 0.84033 1.90691 1.56676 1.17147 1.76557 1.20396 0.99787 0.98098 0.93970 1.18369 0.93859 0.99540 0.97170 1.20160 0.93904 1.00089 1.00443 1.25516 1.03059 1.03364 1.02530 1.84071 0.99042 1.43843 1.38955 1.25298 1.02517 1.02781 1.03340 0.91427 0.92136 0.92148 0.94630 0.90929 0.82960 0.89821 0.94100 0.77523 0.91858 0.91673 0.91491 0.91381 0.88469 0.87516 0.83804 0.81898 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.17 37.16 0.34 -0.96 16 2 C 0.14 1.57 2.88 -67.93 -0.20 1.37 16 3 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 4 C 0.05 0.58 4.98 -3.82 -0.02 0.56 16 5 N -0.66 -10.88 5.85 -115.06 -0.67 -11.55 16 6 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 7 C 0.44 10.54 7.82 -10.98 -0.09 10.46 16 8 O -0.58 -16.04 15.78 5.54 0.09 -15.95 16 9 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 10 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 14 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 N -0.60 -6.88 2.49 -173.93 -0.43 -7.31 16 19 C 0.08 0.67 9.40 59.85 0.56 1.23 16 20 C 0.53 7.29 7.67 -10.98 -0.08 7.21 16 21 O -0.53 -9.58 15.36 5.56 0.09 -9.49 16 22 C -0.08 -0.89 4.51 -29.03 -0.13 -1.02 16 23 C -0.08 -0.97 4.29 -106.25 -0.46 -1.43 16 24 C -0.12 -1.58 9.98 -41.21 -0.41 -1.99 16 25 C -0.21 -2.56 11.23 29.04 0.33 -2.24 16 26 S 0.08 0.86 23.34 -107.50 -2.51 -1.65 16 27 C -0.20 -2.34 10.98 29.04 0.32 -2.02 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.42 6.66 -51.93 -0.35 0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 33 H 0.35 6.54 8.43 -39.29 -0.33 6.21 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 40 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 41 H 0.10 0.77 7.38 -51.93 -0.38 0.38 16 42 H 0.11 1.14 8.09 -51.93 -0.42 0.72 16 43 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 44 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -34.36 390.85 -8.57 -42.92 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -6.55 Total: 15.44 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.11 Total: 4.00 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.44 Total: -57.39 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.17 Total: -25.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.36 -8.57 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666849311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.644 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds