Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00464 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99431 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46988 * 60.00440 * 14 12 10 16 16 H 1.48496 * 109.47065 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47452 * 300.00298 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.46506 * 119.99649 * 60.00148 * 18 2 1 20 20 C 1.34777 * 120.00185 * 240.00699 * 18 2 1 21 21 O 1.21274 * 120.00112 * 359.97438 * 20 18 2 22 22 C 1.50700 * 119.99615 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.46953 * 179.97438 * 22 20 18 24 24 C 1.38422 * 122.53733 * 269.73848 * 23 22 20 25 25 C 1.33390 * 114.91881 * 179.76096 * 24 23 22 26 26 S 1.75881 * 109.59457 * 0.47131 * 25 24 23 27 27 C 1.33383 * 122.54004 * 90.02156 * 23 22 20 28 28 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 29 29 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 31 31 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 32 32 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 33 33 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 34 34 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 35 35 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 36 36 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 37 37 H 0.96997 * 119.99770 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.46574 * 90.00048 * 19 18 2 39 39 H 1.08998 * 109.46996 * 210.00432 * 19 18 2 40 40 H 1.09001 * 109.46821 * 330.00269 * 19 18 2 41 41 H 1.09001 * 109.47030 * 299.99252 * 22 20 18 42 42 H 1.08995 * 109.47333 * 59.99635 * 22 20 18 43 43 H 1.08001 * 122.54006 * 359.97438 * 24 23 22 44 44 H 1.08001 * 125.20140 * 180.21125 * 25 24 23 45 45 H 1.08001 * 125.20190 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 7.7040 -3.3993 -5.2313 14 14 10.1880 -3.0047 -4.0715 15 1 10.5626 -3.7634 -2.8511 16 1 10.7200 -3.7019 -5.2699 17 1 10.7609 -1.6366 -3.9991 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.7932 -0.0356 2.0834 21 8 3.0864 1.1254 1.8913 22 6 3.2950 -0.7459 3.3141 23 6 4.1328 0.2011 4.1341 24 6 5.5001 0.3276 3.9595 25 6 6.0898 1.2138 4.7634 26 16 4.8883 1.9404 5.8225 27 6 3.6138 0.9770 5.0869 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7517 -0.1582 -2.1369 32 1 1.6055 -1.7198 -1.2952 33 1 3.9280 0.0827 -1.0823 34 1 3.6097 -2.5197 -2.4295 35 1 3.7558 -0.9586 -3.2720 36 1 5.7757 -2.5718 -4.0324 37 1 8.2105 -3.8280 -5.9387 38 1 2.4159 -2.7376 0.9716 39 1 1.6238 -2.2853 2.5001 40 1 0.6905 -2.3002 0.9846 41 1 2.4470 -1.0881 3.9073 42 1 3.9004 -1.6025 3.0177 43 1 6.0475 -0.2453 3.2255 44 1 7.1445 1.4462 4.7665 45 1 2.5705 1.0085 5.3645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666849311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -55.720431 kcal Electronic energy + Delta-G solvation = -27051.991012 eV Core-core repulsion = 23195.417878 eV Total energy + Delta-G solvation = -3856.573134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12834 -40.14343 -38.96785 -37.64796 -36.14815 -35.51868 -33.34208 -33.07900 -31.56042 -28.99687 -28.80863 -27.64666 -26.67098 -24.72869 -24.24508 -22.37127 -21.12456 -20.20613 -19.87037 -19.47951 -18.48699 -18.21322 -17.89213 -17.14630 -16.78123 -16.45481 -16.38422 -16.05806 -15.82697 -15.27312 -15.13805 -14.78231 -14.49598 -14.16211 -14.09842 -13.91622 -13.61824 -13.55001 -13.51900 -13.35656 -13.15694 -13.04856 -12.89230 -12.82499 -12.74992 -12.59234 -12.46409 -12.40295 -12.13499 -11.74558 -11.69700 -11.51997 -10.74749 -10.36843 -10.02985 -9.69277 -9.48220 -9.29798 -9.24317 -8.48148 -5.96874 0.10453 0.79051 1.05764 1.38079 1.39833 1.50775 1.66572 1.81456 2.04507 2.27295 2.31882 2.92176 3.18997 3.50740 3.74961 3.90523 3.99760 4.10005 4.20042 4.32835 4.36218 4.39174 4.40899 4.49886 4.50879 4.55121 4.59899 4.67243 4.73306 4.77166 4.82986 4.86038 5.08481 5.12970 5.13829 5.31921 5.38933 5.45723 5.55911 5.72808 5.88657 6.10854 6.30146 6.56123 6.59288 7.11441 7.36319 7.54988 8.11253 8.69113 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.002902 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.577720 B = 9645.561829 C =12046.138109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.136 3.864 3 H 0.067 0.933 4 C 0.051 3.949 5 N -0.675 5.675 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.271 1.271 16 H -0.268 1.268 17 H -0.274 1.274 18 N -0.592 5.592 19 C 0.073 3.927 20 C 0.515 3.485 21 O -0.586 6.586 22 C -0.074 4.074 23 C -0.096 4.096 24 C -0.143 4.143 25 C -0.222 4.222 26 S 0.107 5.893 27 C -0.206 4.206 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.334 0.666 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.176 0.824 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 2.495 15.936 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.078 4.078 5 N -0.306 5.306 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.210 5.210 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.199 1.199 18 N -0.324 5.324 19 C -0.069 4.069 20 C 0.304 3.696 21 O -0.467 6.467 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.173 4.173 25 C -0.357 4.357 26 S 0.370 5.630 27 C -0.341 4.341 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.152 0.848 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.193 0.807 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.231 3.809 17.833 25.088 hybrid contribution 1.064 -0.549 -2.584 2.848 sum -16.167 3.260 15.249 22.462 Atomic orbital electron populations 1.22003 0.91757 1.03779 1.02982 1.21084 0.95517 0.96316 0.83906 0.91480 1.22471 0.86744 1.01908 0.96679 1.60038 1.05630 1.25856 1.39055 1.21530 0.90404 1.01639 0.92923 1.20933 0.90654 0.82435 0.83545 1.90510 1.72830 1.52975 1.34710 1.41916 1.06803 1.51755 1.20547 1.19604 0.83134 1.37031 1.06698 0.90616 1.26010 1.04835 0.95752 0.94495 1.69658 1.38339 1.38410 1.09652 0.85023 0.76884 0.78578 0.78070 1.19654 1.19256 1.19895 1.47668 1.49957 1.13270 1.21509 1.21979 1.01826 0.79792 1.03303 1.20873 0.77246 0.86465 0.85029 1.90660 1.58718 1.19440 1.77854 1.20427 1.00768 0.97289 0.93145 1.18545 0.93608 1.00700 0.98051 1.20247 0.94917 1.01117 1.01022 1.25796 1.04247 1.03056 1.02586 1.83910 0.98134 1.43055 1.37853 1.25646 1.03768 1.01975 1.02700 0.90292 0.90069 0.92349 0.93230 0.88816 0.84909 0.87340 0.92001 0.76952 0.91239 0.93223 0.89057 0.88821 0.84772 0.87562 0.85643 0.80696 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.17 71.98 0.66 -1.34 16 2 C 0.14 2.93 2.88 44.99 0.13 3.06 16 3 H 0.07 1.90 6.90 -2.39 -0.02 1.88 16 4 C 0.05 1.14 4.98 86.31 0.43 1.57 16 5 N -0.67 -21.91 5.85 -517.92 -3.03 -24.94 16 6 C 0.07 2.32 6.17 85.56 0.53 2.85 16 7 C 0.44 21.27 7.82 87.66 0.69 21.95 16 8 O -0.62 -35.91 15.78 -3.08 -0.05 -35.96 16 9 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 10 C -0.34 -19.40 9.68 84.04 0.81 -18.58 16 11 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 13 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 14 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 N -0.59 -13.03 2.49 -822.58 -2.04 -15.07 16 19 C 0.07 1.05 9.40 127.77 1.20 2.25 16 20 C 0.51 14.37 7.67 87.66 0.67 15.04 16 21 O -0.59 -21.92 15.36 -3.01 -0.05 -21.96 16 22 C -0.07 -1.61 4.51 29.10 0.13 -1.48 16 23 C -0.10 -2.47 4.29 -20.92 -0.09 -2.56 16 24 C -0.14 -4.10 9.98 21.22 0.21 -3.89 16 25 C -0.22 -5.59 11.23 66.72 0.75 -4.84 16 26 S 0.11 2.30 23.34 -56.49 -1.32 0.98 16 27 C -0.21 -4.54 10.98 66.72 0.73 -3.81 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.78 6.66 -2.39 -0.02 0.77 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.70 7.84 -2.39 -0.02 1.68 16 33 H 0.33 12.84 8.43 -89.69 -0.76 12.09 16 34 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 37 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.87 6.44 -2.39 -0.02 0.85 16 40 H 0.09 0.88 6.43 -2.39 -0.02 0.86 16 41 H 0.13 1.78 7.38 -2.39 -0.02 1.76 16 42 H 0.11 2.27 8.09 -2.39 -0.02 2.25 16 43 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 44 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 45 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.91 390.85 1.06 -76.86 By element: Atomic # 1 Polarization: 46.07 SS G_CDS: -0.46 Total: 45.61 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.32 Total: 10.09 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.41 Total: -121.16 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -0.09 Total: -57.92 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.98 kcal Total: -77.91 1.06 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666849311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.137 kcal (2) G-P(sol) polarization free energy of solvation -77.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds