Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35678 * 117.00209 * 2 1 4 4 N 1.32277 * 119.68256 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64699 * 179.97438 * 4 3 2 6 6 C 1.38082 * 120.83308 * 0.02562 * 5 4 3 7 7 C 1.38791 * 119.28941 * 359.97438 * 6 5 4 8 8 C 1.38422 * 118.48140 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.43890 * 180.02562 * 8 7 6 10 10 N 1.46903 * 109.46868 * 259.99937 * 9 8 7 11 11 C 1.46895 * 110.99930 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47343 * 180.02562 * 11 10 9 13 13 H 1.09009 * 109.46843 * 294.99663 * 12 11 10 14 14 C 1.53000 * 109.47237 * 174.99751 * 12 11 10 15 15 N 1.46498 * 109.47240 * 54.99149 * 12 11 10 16 16 C 1.34772 * 120.00081 * 205.00249 * 15 12 11 17 17 O 1.21280 * 120.00320 * 0.02562 * 16 15 12 18 18 C 1.50701 * 120.00054 * 180.02562 * 16 15 12 19 19 S 1.80994 * 109.47331 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00271 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99804 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00291 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00276 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46943 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47028 * 119.99706 * 24 22 20 27 27 H 1.48498 * 109.47338 * 240.00302 * 24 22 20 28 28 H 1.09000 * 109.46890 * 299.99757 * 1 2 3 29 29 H 1.08999 * 109.46847 * 59.99975 * 1 2 3 30 30 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.58104 * 180.02562 * 5 4 3 32 32 H 1.08003 * 120.35802 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.75891 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46973 * 19.99730 * 9 8 7 35 35 H 1.08994 * 109.47004 * 140.00011 * 9 8 7 36 36 H 1.00901 * 110.99672 * 303.95139 * 10 9 8 37 37 H 1.09006 * 109.46732 * 299.99857 * 11 10 9 38 38 H 1.08997 * 109.47119 * 59.99483 * 11 10 9 39 39 H 1.08995 * 109.46966 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47155 * 299.99973 * 14 12 11 41 41 H 1.09002 * 109.47242 * 60.00151 * 14 12 11 42 42 H 0.97003 * 120.00097 * 25.00628 * 15 12 11 43 43 H 1.08995 * 109.46814 * 300.00207 * 18 16 15 44 44 H 1.09003 * 109.47287 * 60.00071 * 18 16 15 45 45 H 0.96996 * 120.00528 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5096 0.0000 6 6 3.2507 3.6491 0.0005 7 6 4.0484 2.5133 0.0011 8 6 3.4322 1.2738 0.0005 9 6 4.2558 0.0117 0.0017 10 7 4.3236 -0.5300 -1.3621 11 6 5.1199 -1.7638 -1.3995 12 6 5.1681 -2.2965 -2.8330 13 1 4.1659 -2.5906 -3.1451 14 6 6.0982 -3.5097 -2.8952 15 7 5.6702 -1.2497 -3.7264 16 6 5.3469 -1.2681 -5.0346 17 8 4.6399 -2.1510 -5.4723 18 6 5.8640 -0.1916 -5.9538 19 16 5.2609 -0.4917 -7.6337 20 6 5.9954 0.8736 -8.4710 21 1 6.6061 1.5771 -7.9245 22 6 5.7893 1.0451 -9.8329 23 7 5.0454 0.1874 -10.4990 24 14 6.5674 2.4929 -10.7204 25 1 7.3510 3.3030 -9.7535 26 1 7.4678 1.9920 -11.7898 27 1 5.5027 3.3342 -11.3234 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2515 4.3902 -0.0001 32 1 3.6996 4.6314 0.0005 33 1 5.1253 2.5948 0.0019 34 1 5.2627 0.2353 0.3543 35 1 3.7944 -0.7226 0.6618 36 1 3.3993 -0.6851 -1.7359 37 1 6.1329 -1.5529 -1.0565 38 1 4.6641 -2.5103 -0.7491 39 1 6.1321 -3.8895 -3.9163 40 1 7.1002 -3.2157 -2.5831 41 1 5.7245 -4.2886 -2.2305 42 1 6.2355 -0.5434 -3.3764 43 1 5.5116 0.7805 -5.6091 44 1 6.9539 -0.2046 -5.9517 45 1 4.9016 0.3070 -11.4508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669511500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -69.817879 kcal Electronic energy + Delta-G solvation = -26336.043024 eV Core-core repulsion = 22478.858579 eV Total energy + Delta-G solvation = -3857.184445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66506 -40.67576 -38.82225 -38.00176 -35.83545 -34.57516 -33.51955 -32.49125 -31.59302 -29.89323 -28.33092 -27.65231 -27.55621 -25.00577 -23.94475 -22.77604 -22.50792 -21.46029 -19.81859 -19.30725 -18.07581 -17.83637 -17.68374 -17.06004 -16.87446 -16.53400 -16.37894 -16.07288 -15.80125 -15.61392 -15.39366 -15.13444 -14.73052 -14.64120 -14.35460 -14.28736 -13.94071 -13.83279 -13.26301 -13.21548 -13.14281 -12.99393 -12.91492 -12.90296 -12.76894 -12.55974 -12.29921 -12.18587 -11.83846 -11.67565 -11.14868 -10.84535 -10.76588 -10.58737 -10.24974 -9.98169 -9.52216 -9.26981 -8.64721 -8.33651 -6.11253 0.15436 0.36384 1.29209 1.41877 1.48871 1.60257 1.72393 2.15078 2.27936 2.39936 2.75158 3.00300 3.28137 3.35861 3.40848 3.81920 3.92892 3.95107 4.09482 4.12232 4.19578 4.31935 4.35300 4.38383 4.40187 4.43319 4.54137 4.55920 4.66634 4.68922 4.74310 4.77936 4.80592 4.86051 5.09237 5.14492 5.30245 5.32709 5.42892 5.54640 5.63338 6.02727 6.21125 6.22938 6.28186 6.66309 6.88076 7.07546 7.38312 8.75904 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.002599 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.518674 B =10771.436942 C =12265.874563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.321 6.321 3 C 0.299 3.701 4 N -0.565 5.565 5 C 0.121 3.879 6 C -0.206 4.206 7 C -0.029 4.029 8 C -0.164 4.164 9 C 0.119 3.881 10 N -0.689 5.689 11 C 0.063 3.937 12 C 0.144 3.856 13 H 0.056 0.944 14 C -0.156 4.156 15 N -0.692 5.692 16 C 0.534 3.466 17 O -0.571 6.571 18 C -0.127 4.127 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.335 0.665 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.415 0.585 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 3.900 30.092 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.228 6.228 3 C 0.120 3.880 4 N -0.289 5.289 5 C -0.034 4.034 6 C -0.226 4.226 7 C -0.055 4.055 8 C -0.167 4.167 9 C -0.009 4.009 10 N -0.319 5.319 11 C -0.066 4.066 12 C 0.039 3.961 13 H 0.075 0.925 14 C -0.215 4.215 15 N -0.345 5.345 16 C 0.319 3.681 17 O -0.450 6.450 18 C -0.278 4.278 19 S 0.074 5.926 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.135 0.865 31 H 0.197 0.803 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.152 0.848 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.252 0.748 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.797 2.417 29.082 29.238 hybrid contribution 0.832 1.424 -0.004 1.649 sum -0.965 3.841 29.078 29.346 Atomic orbital electron populations 1.22954 0.76366 1.04221 1.01906 1.86184 1.23850 1.24867 1.87948 1.20025 0.89746 0.84943 0.93250 1.67308 1.41821 0.99660 1.20136 1.22922 0.94251 0.93614 0.92643 1.22362 0.94466 1.01185 1.04610 1.21739 1.02056 0.90127 0.91527 1.20036 0.90456 0.97958 1.08240 1.20624 0.99435 0.91504 0.89370 1.60566 1.20134 1.30135 1.21092 1.22233 1.00173 0.90718 0.93492 1.21005 0.97747 0.87822 0.89505 0.92546 1.22089 1.00397 0.97387 1.01632 1.45616 1.52767 1.29973 1.06135 1.19985 0.79539 0.85137 0.83410 1.90673 1.39043 1.38802 1.76524 1.23344 1.04992 1.01213 0.98256 1.85549 1.68448 1.38728 0.99840 1.23234 1.36453 1.12668 0.96883 0.90047 1.26144 0.95491 1.00283 0.97339 1.70193 1.37870 1.37426 1.09364 0.84895 0.78005 0.77041 0.77934 1.17986 1.19864 1.19933 0.92308 0.93314 0.86533 0.80318 0.81688 0.81565 0.87876 0.94051 0.84817 0.87989 0.92254 0.94860 0.90468 0.89749 0.74812 0.87869 0.87492 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 113.37 1.18 1.87 16 2 O -0.32 -6.90 9.70 -89.95 -0.87 -7.78 16 3 C 0.30 6.59 7.47 84.78 0.63 7.22 16 4 N -0.57 -12.48 9.22 -308.95 -2.85 -15.33 16 5 C 0.12 2.00 11.18 84.64 0.95 2.95 16 6 C -0.21 -2.74 10.11 22.36 0.23 -2.51 16 7 C -0.03 -0.40 9.81 22.45 0.22 -0.18 16 8 C -0.16 -2.94 5.42 -19.67 -0.11 -3.04 16 9 C 0.12 1.74 5.50 85.56 0.47 2.21 16 10 N -0.69 -12.15 6.21 -517.93 -3.22 -15.37 16 11 C 0.06 0.92 5.24 86.30 0.45 1.37 16 12 C 0.14 3.19 2.81 44.99 0.13 3.31 16 13 H 0.06 1.60 7.58 -2.38 -0.02 1.58 16 14 C -0.16 -3.12 9.48 71.98 0.68 -2.44 16 15 N -0.69 -18.06 4.80 -442.53 -2.12 -20.18 16 16 C 0.53 20.44 7.81 87.66 0.68 21.13 16 17 O -0.57 -27.28 15.52 -3.03 -0.05 -27.32 16 18 C -0.13 -5.24 6.16 71.24 0.44 -4.81 16 19 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 20 C -0.54 -31.75 9.50 67.95 0.65 -31.11 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 24 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 34 H 0.10 1.04 8.03 -2.39 -0.02 1.02 16 35 H 0.04 0.63 7.87 -2.39 -0.02 0.61 16 36 H 0.33 7.53 8.70 -89.69 -0.78 6.75 16 37 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.41 8.50 8.60 -92.71 -0.80 7.71 16 43 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 44 H 0.11 3.98 8.14 -2.39 -0.02 3.97 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -81.92 398.90 -1.47 -83.38 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.57 Total: 25.72 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 7.06 Total: -2.88 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -7.90 Total: -107.50 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.92 Total: -35.10 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -81.92 -1.47 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669511500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.565 kcal (2) G-P(sol) polarization free energy of solvation -81.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds