Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46868 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46930 * 119.99745 * 13 11 9 16 16 H 1.48500 * 109.46906 * 239.99741 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47235 * 59.99744 * 17 2 1 21 21 C 1.34773 * 120.00082 * 204.99815 * 20 17 2 22 22 O 1.21279 * 119.99976 * 0.02562 * 21 20 17 23 23 C 1.50703 * 119.99847 * 180.02562 * 21 20 17 24 24 C 1.50695 * 109.47099 * 180.02562 * 23 21 20 25 25 C 1.38431 * 122.53696 * 269.73985 * 24 23 21 26 26 C 1.33391 * 114.91820 * 179.76514 * 25 24 23 27 27 S 1.75881 * 109.59406 * 0.46878 * 26 25 24 28 28 C 1.33385 * 122.53982 * 90.02324 * 24 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 33 33 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 34 34 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 35 35 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 36 36 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 38 38 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 39 39 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 40 40 H 0.97000 * 119.99510 * 25.00567 * 20 17 2 41 41 H 1.09003 * 109.46851 * 300.00227 * 23 21 20 42 42 H 1.09002 * 109.47083 * 59.99915 * 23 21 20 43 43 H 1.07999 * 122.54165 * 359.97438 * 25 24 23 44 44 H 1.07997 * 125.20219 * 180.20867 * 26 25 24 45 45 H 1.08001 * 125.20449 * 0.02618 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 4.2302 -2.2309 8.1775 15 1 5.2134 -0.1829 9.0267 16 1 2.9363 -0.7711 9.6178 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 7 1.5517 -0.0305 -2.4455 21 6 1.4230 -0.7028 -3.6064 22 8 1.7111 -1.8796 -3.6608 23 6 0.9212 0.0078 -4.8370 24 6 0.8698 -0.9606 -5.9905 25 6 1.9390 -1.1542 -6.8483 26 6 1.7298 -2.0506 -7.8137 27 16 0.1008 -2.6990 -7.6736 28 6 -0.2111 -1.6921 -6.2655 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.9173 -1.1205 1.0287 33 1 2.7588 1.0461 2.1183 34 1 1.0871 0.6161 2.5526 35 1 2.5041 1.0615 4.8011 36 1 3.1291 1.8421 7.9855 37 1 3.9330 0.3072 -1.2497 38 1 3.9338 -1.2342 -0.3596 39 1 3.9334 -1.2340 -2.1398 40 1 1.3210 0.9107 -2.4018 41 1 -0.0780 0.4003 -4.6478 42 1 1.5941 0.8297 -5.0818 43 1 2.8729 -0.6223 -6.7418 44 1 2.4490 -2.3318 -8.5686 45 1 -1.1364 -1.6694 -5.7090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674624774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = -40.748351 kcal Electronic energy + Delta-G solvation = -26066.722790 eV Core-core repulsion = 22210.798894 eV Total energy + Delta-G solvation = -3855.923896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32812 -38.68927 -38.09669 -37.06734 -34.43848 -33.79704 -31.94086 -31.24258 -30.47732 -29.84640 -28.20351 -26.38777 -24.33496 -23.94332 -22.98685 -20.74111 -20.52846 -19.32530 -19.00508 -18.00200 -17.87897 -17.41312 -16.59603 -16.04911 -15.59145 -15.42694 -15.24445 -14.56991 -14.36495 -13.99206 -13.95895 -13.79203 -13.53798 -13.36999 -13.16930 -13.09589 -12.83096 -12.55343 -12.43942 -12.36486 -12.03296 -11.92052 -11.69547 -11.57589 -11.44010 -11.33148 -11.07471 -11.06209 -10.62809 -10.34550 -10.23050 -10.06237 -9.52672 -9.26223 -9.07076 -8.66382 -8.46625 -8.11181 -7.96789 -6.42557 -3.83217 0.73686 1.39024 1.70299 2.31252 2.46802 3.05065 3.16095 3.26829 3.34407 3.89824 4.10551 4.33669 4.40977 4.52091 4.58544 4.77296 4.82634 4.89725 5.04544 5.11102 5.13520 5.14946 5.24423 5.31459 5.35760 5.49515 5.63485 5.65967 5.72117 5.77109 5.87487 5.95374 5.96009 6.07251 6.12779 6.14310 6.21540 6.30346 6.34986 7.17780 7.29910 7.55026 7.62663 8.05764 8.06031 8.60470 9.17426 9.53461 10.04873 10.75240 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.001597 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.892547 B =17532.616353 C =17685.646615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.046 0.954 4 N -0.661 5.661 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.141 3.859 18 H 0.099 0.901 19 C -0.170 4.170 20 N -0.723 5.723 21 C 0.514 3.486 22 O -0.527 6.527 23 C -0.082 4.082 24 C -0.084 4.084 25 C -0.121 4.121 26 C -0.213 4.213 27 S 0.095 5.905 28 C -0.198 4.198 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.352 0.648 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.398 0.602 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.163 0.837 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 3.508 -28.825 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.064 0.936 4 N -0.297 5.297 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.037 3.963 18 H 0.117 0.883 19 C -0.228 4.228 20 N -0.376 5.376 21 C 0.299 3.701 22 O -0.402 6.402 23 C -0.125 4.125 24 C -0.097 4.097 25 C -0.152 4.152 26 C -0.348 4.348 27 S 0.358 5.642 28 C -0.334 4.334 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.174 0.826 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.156 0.844 44 H 0.181 0.819 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.856 0.620 -29.415 30.209 hybrid contribution 1.668 2.325 1.560 3.259 sum -5.188 2.945 -27.855 28.487 Atomic orbital electron populations 1.21801 0.94195 1.02757 1.00953 1.21735 0.96505 0.95814 0.89240 0.93611 1.60173 1.35371 1.31873 1.02302 1.21721 1.01324 0.93834 0.91221 1.19796 0.84972 0.88212 0.84439 1.90532 1.55222 1.16101 1.84728 1.41865 1.57779 1.12441 1.07975 1.19765 1.39757 0.96514 0.86786 0.87836 1.25263 0.97678 0.95789 0.99237 1.69619 1.48756 1.08893 1.27074 0.85799 0.78212 0.79649 0.80686 1.19203 1.20781 1.20743 1.21060 0.93866 0.98253 0.83168 0.88332 1.22254 0.95301 1.02133 1.03137 1.46014 1.67977 1.13933 1.09659 1.20507 0.77877 0.87504 0.84174 1.90749 1.48890 1.15829 1.84710 1.20374 1.03955 0.97515 0.90634 1.18301 0.93609 1.00186 0.97624 1.20010 0.99708 1.00171 0.95273 1.25532 1.00235 1.03731 1.05343 1.84251 1.09558 1.43392 1.26972 1.25419 1.03358 1.02325 1.02286 0.91772 0.92321 0.92950 0.82568 0.93845 0.89536 0.77483 0.91942 0.92546 0.90859 0.91737 0.76744 0.87911 0.87858 0.84413 0.81912 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.26 37.16 0.34 -1.17 16 2 C 0.08 0.90 2.28 -67.71 -0.15 0.74 16 3 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 4 N -0.66 -10.44 5.93 -107.99 -0.64 -11.08 16 5 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 6 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 7 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 8 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 9 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 13 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.14 1.57 2.29 -67.93 -0.16 1.41 16 18 H 0.10 1.37 7.58 -51.93 -0.39 0.98 16 19 C -0.17 -1.89 9.25 37.16 0.34 -1.55 16 20 N -0.72 -6.05 4.38 -53.80 -0.24 -6.29 16 21 C 0.51 5.09 7.79 -10.99 -0.09 5.00 16 22 O -0.53 -7.69 15.70 5.56 0.09 -7.60 16 23 C -0.08 -0.53 5.96 -29.04 -0.17 -0.71 16 24 C -0.08 -0.73 4.29 -106.25 -0.46 -1.18 16 25 C -0.12 -1.02 9.98 -41.20 -0.41 -1.43 16 26 C -0.21 -1.69 11.23 29.04 0.33 -1.37 16 27 S 0.09 0.76 23.34 -107.50 -2.51 -1.75 16 28 C -0.20 -1.70 10.98 29.04 0.32 -1.38 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 31 H 0.05 0.43 7.45 -51.93 -0.39 0.05 16 32 H 0.35 5.79 5.87 -39.29 -0.23 5.56 16 33 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 35 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.40 2.17 8.39 -40.82 -0.34 1.82 16 41 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.10 0.44 8.13 -51.93 -0.42 0.02 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 45 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -34.29 391.05 -8.62 -42.91 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.49 Total: 14.11 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.46 Total: 1.50 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.21 Total: -55.34 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.29 -8.62 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674624774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.160 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds