Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46868 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46930 * 119.99745 * 13 11 9 16 16 H 1.48500 * 109.46906 * 239.99741 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47235 * 59.99744 * 17 2 1 21 21 C 1.34773 * 120.00082 * 204.99815 * 20 17 2 22 22 O 1.21279 * 119.99976 * 0.02562 * 21 20 17 23 23 C 1.50703 * 119.99847 * 180.02562 * 21 20 17 24 24 C 1.50695 * 109.47099 * 180.02562 * 23 21 20 25 25 C 1.38431 * 122.53696 * 269.73985 * 24 23 21 26 26 C 1.33391 * 114.91820 * 179.76514 * 25 24 23 27 27 S 1.75881 * 109.59406 * 0.46878 * 26 25 24 28 28 C 1.33385 * 122.53982 * 90.02324 * 24 23 21 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 33 33 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 34 34 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 35 35 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 36 36 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 38 38 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 39 39 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 40 40 H 0.97000 * 119.99510 * 25.00567 * 20 17 2 41 41 H 1.09003 * 109.46851 * 300.00227 * 23 21 20 42 42 H 1.09002 * 109.47083 * 59.99915 * 23 21 20 43 43 H 1.07999 * 122.54165 * 359.97438 * 25 24 23 44 44 H 1.07997 * 125.20219 * 180.20867 * 26 25 24 45 45 H 1.08001 * 125.20449 * 0.02618 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 4.2302 -2.2309 8.1775 15 1 5.2134 -0.1829 9.0267 16 1 2.9363 -0.7711 9.6178 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 7 1.5517 -0.0305 -2.4455 21 6 1.4230 -0.7028 -3.6064 22 8 1.7111 -1.8796 -3.6608 23 6 0.9212 0.0078 -4.8370 24 6 0.8698 -0.9606 -5.9905 25 6 1.9390 -1.1542 -6.8483 26 6 1.7298 -2.0506 -7.8137 27 16 0.1008 -2.6990 -7.6736 28 6 -0.2111 -1.6921 -6.2655 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.9173 -1.1205 1.0287 33 1 2.7588 1.0461 2.1183 34 1 1.0871 0.6161 2.5526 35 1 2.5041 1.0615 4.8011 36 1 3.1291 1.8421 7.9855 37 1 3.9330 0.3072 -1.2497 38 1 3.9338 -1.2342 -0.3596 39 1 3.9334 -1.2340 -2.1398 40 1 1.3210 0.9107 -2.4018 41 1 -0.0780 0.4003 -4.6478 42 1 1.5941 0.8297 -5.0818 43 1 2.8729 -0.6223 -6.7418 44 1 2.4490 -2.3318 -8.5686 45 1 -1.1364 -1.6694 -5.7090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674624774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -66.151076 kcal Electronic energy + Delta-G solvation = -26067.824335 eV Core-core repulsion = 22210.798894 eV Total energy + Delta-G solvation = -3857.025441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13094 -40.20771 -39.06595 -38.10042 -36.03408 -35.26268 -33.28686 -32.67000 -31.39686 -30.75658 -28.84961 -27.96728 -25.91393 -24.81844 -23.80833 -21.56552 -21.45785 -21.08203 -19.93161 -19.62198 -18.61750 -18.28358 -17.64069 -17.39836 -16.84556 -16.44102 -16.27920 -16.00023 -15.79731 -15.44045 -15.11587 -14.86208 -14.58728 -14.23159 -14.15309 -13.89701 -13.77044 -13.57767 -13.50161 -13.45003 -13.17242 -13.02205 -12.89631 -12.66725 -12.63244 -12.46617 -12.40259 -12.29192 -12.11871 -11.67037 -11.59297 -11.51237 -10.91231 -10.34170 -10.08732 -10.01101 -9.67550 -9.34539 -9.27608 -8.46916 -5.95289 0.13196 0.80214 1.10902 1.36446 1.42041 1.55951 1.67872 1.73093 2.05416 2.25437 2.34834 3.01337 3.20562 3.51452 3.60536 3.85084 3.97624 4.06180 4.15710 4.19417 4.31682 4.40332 4.44977 4.47382 4.54740 4.60591 4.60936 4.67301 4.73687 4.79693 4.88479 4.98634 5.03451 5.14307 5.20473 5.40815 5.42036 5.48651 5.50792 5.56745 5.90874 6.11925 6.38257 6.60486 6.64205 7.13131 7.36332 7.56595 8.12390 8.70579 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.001597 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.892547 B =17532.616353 C =17685.646615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.073 0.927 4 N -0.682 5.682 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.572 5.572 9 C -0.334 4.334 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.275 1.275 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.150 3.850 18 H 0.065 0.935 19 C -0.164 4.164 20 N -0.707 5.707 21 C 0.513 3.487 22 O -0.580 6.580 23 C -0.074 4.074 24 C -0.096 4.096 25 C -0.136 4.136 26 C -0.220 4.220 27 S 0.083 5.917 28 C -0.214 4.214 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.345 0.655 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.418 0.582 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.181 0.819 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 5.898 -29.456 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.091 0.909 4 N -0.318 5.318 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.512 6.512 8 N -0.209 5.209 9 C -0.464 4.464 10 H 0.095 0.905 11 C -0.211 4.211 12 N -0.559 5.559 13 Si 0.815 3.185 14 H -0.200 1.200 15 H -0.195 1.195 16 H -0.196 1.196 17 C 0.045 3.955 18 H 0.083 0.917 19 C -0.223 4.223 20 N -0.361 5.361 21 C 0.301 3.699 22 O -0.459 6.459 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.167 4.167 26 C -0.355 4.355 27 S 0.346 5.654 28 C -0.349 4.349 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.167 0.833 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.256 0.744 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.168 0.832 44 H 0.198 0.802 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.226 3.087 -30.059 31.069 hybrid contribution 1.766 1.556 1.695 2.901 sum -5.460 4.644 -28.364 29.255 Atomic orbital electron populations 1.21809 0.93480 1.01770 1.02426 1.21783 0.96852 0.96599 0.87414 0.90890 1.60167 1.35255 1.32695 1.03642 1.21575 1.02483 0.93618 0.88783 1.20935 0.83196 0.87983 0.85523 1.90502 1.56679 1.18363 1.85631 1.41918 1.58250 1.12614 1.08165 1.19693 1.42070 0.95956 0.88660 0.90495 1.26006 0.97240 0.96631 1.01261 1.69668 1.48584 1.09619 1.28076 0.84891 0.78213 0.77991 0.77356 1.20013 1.19500 1.19610 1.20740 0.93718 0.96872 0.84210 0.91721 1.22185 0.95342 1.02925 1.01820 1.45807 1.67175 1.14680 1.08393 1.21140 0.76755 0.86922 0.85128 1.90738 1.51296 1.18347 1.85534 1.20446 1.06083 0.97221 0.87851 1.18619 0.93469 1.00601 0.98227 1.20301 1.00349 1.00562 0.95446 1.25845 1.00336 1.03508 1.05792 1.84243 1.10131 1.43736 1.27267 1.25686 1.04142 1.02514 1.02583 0.94022 0.92507 0.89787 0.83325 0.91023 0.87625 0.76869 0.91287 0.90583 0.92373 0.92882 0.74445 0.85094 0.84917 0.83152 0.80206 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.26 71.98 0.67 -1.99 16 2 C 0.08 1.74 2.28 44.92 0.10 1.84 16 3 H 0.07 1.20 7.80 -2.39 -0.02 1.18 16 4 N -0.68 -20.94 5.93 -495.57 -2.94 -23.88 16 5 C 0.07 2.22 5.97 85.56 0.51 2.73 16 6 C 0.44 20.62 7.82 87.66 0.69 21.30 16 7 O -0.63 -35.03 15.78 -3.06 -0.05 -35.08 16 8 N -0.57 -29.11 5.29 -306.98 -1.62 -30.74 16 9 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 12 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 13 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 C 0.15 3.17 2.29 44.99 0.10 3.27 16 18 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 19 C -0.16 -3.54 9.25 71.98 0.67 -2.87 16 20 N -0.71 -10.03 4.38 -442.53 -1.94 -11.97 16 21 C 0.51 9.26 7.79 87.66 0.68 9.94 16 22 O -0.58 -16.95 15.70 -3.03 -0.05 -16.99 16 23 C -0.07 -0.74 5.96 29.10 0.17 -0.57 16 24 C -0.10 -1.51 4.29 -20.92 -0.09 -1.60 16 25 C -0.14 -2.14 9.98 21.22 0.21 -1.93 16 26 C -0.22 -3.33 11.23 66.72 0.75 -2.58 16 27 S 0.08 1.31 23.34 -56.49 -1.32 0.00 16 28 C -0.21 -3.49 10.98 66.72 0.73 -2.75 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.13 7.45 -2.39 -0.02 1.12 16 31 H 0.08 1.07 7.45 -2.39 -0.02 1.06 16 32 H 0.34 11.41 5.87 -89.70 -0.53 10.88 16 33 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 34 H 0.11 3.10 7.44 -2.39 -0.02 3.08 16 35 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 36 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.43 6.21 -2.39 -0.01 1.42 16 39 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.42 2.79 8.39 -92.71 -0.78 2.01 16 41 H 0.13 0.60 8.12 -2.39 -0.02 0.58 16 42 H 0.13 0.57 8.13 -2.39 -0.02 0.55 16 43 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -77.18 391.05 -0.13 -77.31 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -1.00 Total: 38.67 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 6.47 Total: 6.45 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -6.22 Total: -115.36 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.10 Total: -52.07 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: 0.00 kcal Total: -77.18 -0.13 -77.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674624774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.158 kcal (2) G-P(sol) polarization free energy of solvation -77.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds