Wall clock time and date at job start Sat Apr 11 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.47206 * 109.47169 * 240.00529 * 2 1 3 5 5 N 2.60805 * 109.47207 * 240.00384 * 2 1 3 6 6 C 1.50698 * 109.47345 * 120.00251 * 2 1 3 7 7 O 1.21275 * 120.00046 * 120.00076 * 6 2 1 8 8 N 1.34776 * 120.00152 * 300.00181 * 6 2 1 9 9 C 1.47426 * 125.64397 * 4.64637 * 8 6 2 10 10 C 1.54915 * 104.83230 * 204.09309 * 9 8 6 11 11 C 1.55153 * 101.57729 * 322.99065 * 10 9 8 12 12 C 1.47019 * 125.65023 * 184.60609 * 8 6 2 13 13 H 1.08998 * 109.88364 * 59.56209 * 12 8 6 14 14 C 1.52997 * 109.87964 * 298.54355 * 12 8 6 15 15 N 1.46511 * 109.46866 * 174.10581 * 14 12 8 16 16 C 1.46494 * 119.99610 * 95.35289 * 15 14 12 17 17 C 1.34771 * 119.99844 * 275.35340 * 15 14 12 18 18 O 1.21278 * 120.00471 * 0.02562 * 17 15 14 19 19 C 1.50703 * 119.99727 * 179.97438 * 17 15 14 20 20 S 1.80997 * 109.47156 * 179.97438 * 19 17 15 21 21 C 1.76199 * 100.00242 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99770 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00414 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99834 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00178 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46881 * 90.00172 * 25 23 21 27 27 H 1.48496 * 109.47389 * 210.00350 * 25 23 21 28 28 H 1.48500 * 109.47365 * 330.00484 * 25 23 21 29 29 H 1.09001 * 109.47481 * 299.99619 * 1 2 3 30 30 H 1.09002 * 109.46948 * 59.99968 * 1 2 3 31 31 H 1.08997 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.09003 * 110.37264 * 322.92893 * 9 8 6 33 33 H 1.09001 * 110.36777 * 85.14659 * 9 8 6 34 34 H 1.09001 * 111.00297 * 81.06361 * 10 9 8 35 35 H 1.08998 * 111.00426 * 204.87838 * 10 9 8 36 36 H 1.08997 * 110.72552 * 277.13426 * 11 10 9 37 37 H 1.09008 * 110.72011 * 153.86370 * 11 10 9 38 38 H 1.09000 * 109.47585 * 294.10503 * 14 12 8 39 39 H 1.08998 * 109.47241 * 54.11077 * 14 12 8 40 40 H 1.09001 * 109.47317 * 89.99993 * 16 15 14 41 41 H 1.09005 * 109.47020 * 209.99860 * 16 15 14 42 42 H 1.09004 * 109.47552 * 330.00113 * 16 15 14 43 43 H 1.08997 * 109.47149 * 300.00332 * 19 17 15 44 44 H 1.09002 * 109.47007 * 60.00295 * 19 17 15 45 45 H 0.97001 * 120.00027 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3994 -1.2293 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1191 8 7 1.7068 -0.2501 2.4545 9 6 0.7938 0.8729 2.7353 10 6 1.2204 1.3914 4.1314 11 6 1.5829 0.0689 4.8573 12 6 2.2026 -0.7851 3.7310 13 1 3.2896 -0.7126 3.7662 14 6 1.7734 -2.2455 3.8848 15 7 2.3880 -2.8110 5.0886 16 6 1.6437 -2.8319 6.3502 17 6 3.6381 -3.3117 5.0352 18 8 4.2545 -3.2939 3.9909 19 6 4.2705 -3.8928 6.2736 20 16 5.9377 -4.4784 5.8816 21 6 6.4265 -5.0893 7.4604 22 1 5.7471 -5.0267 8.2976 23 6 7.6843 -5.6518 7.6279 24 7 8.5121 -5.7284 6.6074 25 14 8.2028 -6.2987 9.3018 26 1 7.8206 -7.7288 9.4198 27 1 9.6743 -6.1657 9.4498 28 1 7.5254 -5.5159 10.3666 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.9142 1.6561 1.9868 33 1 -0.2392 0.5256 2.7572 34 1 2.0884 2.0465 4.0563 35 1 0.3936 1.8973 4.6297 36 1 0.6887 -0.4096 5.2565 37 1 2.3105 0.2501 5.6485 38 1 0.6881 -2.2981 3.9721 39 1 2.0956 -2.8129 3.0117 40 1 1.0787 -3.7612 6.4233 41 1 2.3415 -2.7644 7.1849 42 1 0.9571 -1.9859 6.3812 43 1 4.3266 -3.1265 7.0467 44 1 3.6677 -4.7272 6.6321 45 1 9.3913 -6.1212 6.7245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677731455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:27 Heat of formation + Delta-G solvation = -29.669494 kcal Electronic energy + Delta-G solvation = -27237.830174 eV Core-core repulsion = 23382.386693 eV Total energy + Delta-G solvation = -3855.443480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93192 -39.35305 -37.98516 -36.66220 -35.30628 -33.95237 -32.40092 -31.65762 -31.08784 -28.77471 -27.12945 -26.05092 -25.50908 -24.75187 -23.28323 -21.85913 -19.98631 -19.09139 -17.92223 -17.70543 -17.52397 -16.70459 -16.37255 -16.01716 -15.48801 -15.29812 -14.86885 -14.78040 -14.31427 -14.03463 -13.92279 -13.74600 -13.53488 -13.30857 -13.10818 -13.03827 -12.97175 -12.72879 -12.56699 -12.47372 -12.25775 -12.17670 -12.13736 -11.91077 -11.80669 -11.53629 -11.15300 -11.04436 -10.99496 -10.96453 -10.73202 -10.02348 -9.77819 -9.28424 -9.16206 -9.03942 -8.39633 -8.17365 -6.46401 -6.18388 -3.88895 2.10361 2.22013 2.56038 2.76962 3.06490 3.14562 3.23874 3.28624 3.32222 3.46118 3.66872 3.94904 4.10525 4.22957 4.34854 4.39905 4.43312 4.56048 4.72420 4.85157 4.91156 5.01328 5.03458 5.11763 5.13316 5.16353 5.18303 5.33300 5.38670 5.45480 5.48902 5.54145 5.59518 5.65980 5.70008 5.79638 5.92424 5.96755 6.14972 6.16072 6.66067 7.09567 7.31618 7.57204 7.62090 7.81700 8.37810 8.64576 9.26429 10.88979 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002565 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.687987 B =10913.061171 C =12041.210784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.006 4.006 3 H 0.139 0.861 4 C 0.218 3.782 5 N -0.407 5.407 6 C 0.531 3.469 7 O -0.500 6.500 8 N -0.611 5.611 9 C 0.094 3.906 10 C -0.134 4.134 11 C -0.126 4.126 12 C 0.123 3.877 13 H 0.087 0.913 14 C 0.110 3.890 15 N -0.623 5.623 16 C 0.079 3.921 17 C 0.527 3.473 18 O -0.500 6.500 19 C -0.149 4.149 20 S -0.062 6.062 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.493 19.422 -3.841 31.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 H 0.156 0.844 4 C -0.101 4.101 5 N -0.082 5.082 6 C 0.316 3.684 7 O -0.373 6.373 8 N -0.347 5.347 9 C -0.029 4.029 10 C -0.172 4.172 11 C -0.164 4.164 12 C 0.019 3.981 13 H 0.105 0.895 14 C -0.014 4.014 15 N -0.360 5.360 16 C -0.065 4.065 17 C 0.314 3.686 18 O -0.373 6.373 19 C -0.299 4.299 20 S 0.165 5.835 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.394 17.986 -7.024 29.569 hybrid contribution -0.541 -0.181 2.793 2.851 sum -22.935 17.806 -4.231 29.342 Atomic orbital electron populations 1.21986 0.89768 1.04570 1.04654 1.18758 0.98719 1.00027 0.85553 0.84392 1.28025 0.93986 0.94105 0.94000 1.81212 1.07304 1.07408 1.12257 1.19688 0.81046 0.84858 0.82854 1.90929 1.36325 1.24682 1.85355 1.48358 1.47218 1.34231 1.04881 1.22561 0.93704 0.88734 0.97911 1.22810 1.02389 0.97450 0.94582 1.22778 1.01506 0.94970 0.97173 1.22086 1.00244 0.93897 0.81843 0.89518 1.21687 0.96835 0.93117 0.89790 1.47786 1.15763 1.62322 1.10144 1.21837 0.96953 1.01549 0.86135 1.20400 0.80427 0.77264 0.90482 1.90776 1.60846 1.54333 1.31323 1.23549 1.05240 1.03105 0.98018 1.85494 1.04922 1.76998 1.16075 1.22854 1.03415 1.46143 0.95874 0.90989 1.24995 0.95439 0.95351 0.97849 1.70025 1.07830 1.42173 1.30197 0.86175 0.77815 0.79160 0.82376 1.20291 1.20776 1.19718 0.89412 0.90244 0.90941 0.90006 0.90568 0.90257 0.89546 0.90296 0.89651 0.90860 0.88551 0.92815 0.90598 0.91399 0.89354 0.89384 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 8.90 37.16 0.33 -0.18 16 2 C -0.01 -0.04 2.45 -94.56 -0.23 -0.27 16 3 H 0.14 0.44 7.95 -51.93 -0.41 0.03 16 4 C 0.22 2.48 13.88 -20.76 -0.29 2.19 16 5 N -0.41 -5.99 18.54 42.15 0.78 -5.21 16 6 C 0.53 5.79 7.03 -10.99 -0.08 5.72 16 7 O -0.50 -8.65 14.81 5.56 0.08 -8.57 16 8 N -0.61 -5.13 3.07 -163.01 -0.50 -5.63 16 9 C 0.09 0.32 5.10 -2.52 -0.01 0.31 16 10 C -0.13 -0.50 7.09 -24.58 -0.17 -0.68 16 11 C -0.13 -0.80 5.67 -24.90 -0.14 -0.94 16 12 C 0.12 1.30 3.10 -66.95 -0.21 1.10 16 13 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 14 C 0.11 1.37 4.80 -4.04 -0.02 1.35 16 15 N -0.62 -8.65 2.76 -181.57 -0.50 -9.15 16 16 C 0.08 0.74 9.95 59.84 0.60 1.34 16 17 C 0.53 10.29 7.65 -10.99 -0.08 10.20 16 18 O -0.50 -12.15 15.53 5.56 0.09 -12.07 16 19 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16 20 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 21 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 22 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 25 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.09 0.10 4.77 -51.93 -0.25 -0.15 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.10 7.09 -51.93 -0.37 -0.27 16 33 H 0.08 0.14 7.26 -51.93 -0.38 -0.24 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.08 0.39 6.34 -51.93 -0.33 0.06 16 37 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 39 H 0.10 1.63 5.98 -51.93 -0.31 1.32 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 42 H 0.07 0.43 6.17 -51.93 -0.32 0.11 16 43 H 0.09 1.65 7.40 -51.92 -0.38 1.26 16 44 H 0.09 1.69 8.11 -51.91 -0.42 1.27 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 383.22 15.07 5.77 5.77 Total: -1.00 -41.38 383.22 -7.14 -48.52 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -6.42 Total: -4.60 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 0.06 Total: 4.17 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.51 Total: -45.88 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.38 -7.14 -48.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677731455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.847 kcal (2) G-P(sol) polarization free energy of solvation -41.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds