Wall clock time and date at job start Sat Apr 11 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.47206 * 109.47169 * 240.00529 * 2 1 3 5 5 N 2.60805 * 109.47207 * 240.00384 * 2 1 3 6 6 C 1.50698 * 109.47345 * 120.00251 * 2 1 3 7 7 O 1.21275 * 120.00046 * 120.00076 * 6 2 1 8 8 N 1.34776 * 120.00152 * 300.00181 * 6 2 1 9 9 C 1.47426 * 125.64397 * 4.64637 * 8 6 2 10 10 C 1.54915 * 104.83230 * 204.09309 * 9 8 6 11 11 C 1.55153 * 101.57729 * 322.99065 * 10 9 8 12 12 C 1.47019 * 125.65023 * 184.60609 * 8 6 2 13 13 H 1.08998 * 109.88364 * 59.56209 * 12 8 6 14 14 C 1.52997 * 109.87964 * 298.54355 * 12 8 6 15 15 N 1.46511 * 109.46866 * 174.10581 * 14 12 8 16 16 C 1.46494 * 119.99610 * 95.35289 * 15 14 12 17 17 C 1.34771 * 119.99844 * 275.35340 * 15 14 12 18 18 O 1.21278 * 120.00471 * 0.02562 * 17 15 14 19 19 C 1.50703 * 119.99727 * 179.97438 * 17 15 14 20 20 S 1.80997 * 109.47156 * 179.97438 * 19 17 15 21 21 C 1.76199 * 100.00242 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99770 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00414 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99834 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00178 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46881 * 90.00172 * 25 23 21 27 27 H 1.48496 * 109.47389 * 210.00350 * 25 23 21 28 28 H 1.48500 * 109.47365 * 330.00484 * 25 23 21 29 29 H 1.09001 * 109.47481 * 299.99619 * 1 2 3 30 30 H 1.09002 * 109.46948 * 59.99968 * 1 2 3 31 31 H 1.08997 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.09003 * 110.37264 * 322.92893 * 9 8 6 33 33 H 1.09001 * 110.36777 * 85.14659 * 9 8 6 34 34 H 1.09001 * 111.00297 * 81.06361 * 10 9 8 35 35 H 1.08998 * 111.00426 * 204.87838 * 10 9 8 36 36 H 1.08997 * 110.72552 * 277.13426 * 11 10 9 37 37 H 1.09008 * 110.72011 * 153.86370 * 11 10 9 38 38 H 1.09000 * 109.47585 * 294.10503 * 14 12 8 39 39 H 1.08998 * 109.47241 * 54.11077 * 14 12 8 40 40 H 1.09001 * 109.47317 * 89.99993 * 16 15 14 41 41 H 1.09005 * 109.47020 * 209.99860 * 16 15 14 42 42 H 1.09004 * 109.47552 * 330.00113 * 16 15 14 43 43 H 1.08997 * 109.47149 * 300.00332 * 19 17 15 44 44 H 1.09002 * 109.47007 * 60.00295 * 19 17 15 45 45 H 0.97001 * 120.00027 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3994 -1.2293 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1191 8 7 1.7068 -0.2501 2.4545 9 6 0.7938 0.8729 2.7353 10 6 1.2204 1.3914 4.1314 11 6 1.5829 0.0689 4.8573 12 6 2.2026 -0.7851 3.7310 13 1 3.2896 -0.7126 3.7662 14 6 1.7734 -2.2455 3.8848 15 7 2.3880 -2.8110 5.0886 16 6 1.6437 -2.8319 6.3502 17 6 3.6381 -3.3117 5.0352 18 8 4.2545 -3.2939 3.9909 19 6 4.2705 -3.8928 6.2736 20 16 5.9377 -4.4784 5.8816 21 6 6.4265 -5.0893 7.4604 22 1 5.7471 -5.0267 8.2976 23 6 7.6843 -5.6518 7.6279 24 7 8.5121 -5.7284 6.6074 25 14 8.2028 -6.2987 9.3018 26 1 7.8206 -7.7288 9.4198 27 1 9.6743 -6.1657 9.4498 28 1 7.5254 -5.5159 10.3666 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.9142 1.6561 1.9868 33 1 -0.2392 0.5256 2.7572 34 1 2.0884 2.0465 4.0563 35 1 0.3936 1.8973 4.6297 36 1 0.6887 -0.4096 5.2565 37 1 2.3105 0.2501 5.6485 38 1 0.6881 -2.2981 3.9721 39 1 2.0956 -2.8129 3.0117 40 1 1.0787 -3.7612 6.4233 41 1 2.3415 -2.7644 7.1849 42 1 0.9571 -1.9859 6.3812 43 1 4.3266 -3.1265 7.0467 44 1 3.6677 -4.7272 6.6321 45 1 9.3913 -6.1212 6.7245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677731455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:27 Heat of formation + Delta-G solvation = -61.166878 kcal Electronic energy + Delta-G solvation = -27239.196003 eV Core-core repulsion = 23382.386693 eV Total energy + Delta-G solvation = -3856.809309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.73867 -40.67496 -38.82739 -37.61943 -36.56034 -34.67318 -34.60114 -32.25434 -32.11890 -30.04202 -27.94521 -27.70717 -26.60578 -25.65092 -24.04434 -22.30472 -20.96922 -20.40829 -19.51385 -18.62518 -18.35485 -17.93639 -17.45063 -16.98597 -16.89864 -16.59674 -16.39217 -15.73826 -15.57405 -15.02498 -14.95075 -14.62222 -14.46148 -14.42502 -14.14472 -14.01394 -13.87712 -13.73760 -13.54235 -13.44562 -13.18338 -13.17379 -13.03999 -12.90041 -12.86567 -12.70793 -12.58686 -12.41218 -11.90435 -11.81474 -11.71591 -11.51432 -11.15652 -10.95309 -10.82164 -10.26719 -10.01373 -9.45900 -8.70738 -8.35499 -6.15277 1.21384 1.30766 1.41912 1.43330 1.46770 1.56141 1.60187 1.67801 1.98625 2.25907 2.31817 2.75478 2.98454 3.26391 3.39418 3.66619 3.72771 3.84282 3.89576 3.93999 4.11163 4.17477 4.21607 4.32195 4.35423 4.43022 4.49101 4.66531 4.73059 4.78591 4.84885 4.86538 4.91970 4.95505 5.06277 5.08626 5.24755 5.29376 5.33978 5.39707 5.45340 5.60437 6.18320 6.28182 6.35711 6.51922 7.04615 7.04880 7.18878 8.74031 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002565 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.687987 B =10913.061171 C =12041.210784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 H 0.186 0.814 4 C 0.239 3.761 5 N -0.479 5.479 6 C 0.522 3.478 7 O -0.582 6.582 8 N -0.603 5.603 9 C 0.082 3.918 10 C -0.126 4.126 11 C -0.120 4.120 12 C 0.123 3.877 13 H 0.028 0.972 14 C 0.111 3.889 15 N -0.606 5.606 16 C 0.068 3.932 17 C 0.522 3.478 18 O -0.564 6.564 19 C -0.117 4.117 20 S -0.166 6.166 21 C -0.541 4.541 22 H 0.086 0.914 23 C 0.009 3.991 24 N -0.915 5.915 25 Si 1.003 2.997 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.253 1.253 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.989 22.385 -0.719 36.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 H 0.203 0.797 4 C -0.079 4.079 5 N -0.155 5.155 6 C 0.310 3.690 7 O -0.461 6.461 8 N -0.337 5.337 9 C -0.038 4.038 10 C -0.164 4.164 11 C -0.158 4.158 12 C 0.018 3.982 13 H 0.047 0.953 14 C -0.013 4.013 15 N -0.340 5.340 16 C -0.073 4.073 17 C 0.309 3.691 18 O -0.442 6.442 19 C -0.268 4.268 20 S 0.061 5.939 21 C -0.689 4.689 22 H 0.104 0.896 23 C -0.195 4.195 24 N -0.551 5.551 25 Si 0.824 3.176 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.177 1.177 29 H 0.141 0.859 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.002 21.026 -3.855 34.439 hybrid contribution 0.716 -1.022 1.839 2.222 sum -26.286 20.004 -2.016 33.094 Atomic orbital electron populations 1.22089 0.86292 1.04422 1.07473 1.19162 1.01130 1.00671 0.81143 0.79742 1.29017 0.92166 0.92700 0.94065 1.81206 1.09719 1.09599 1.15002 1.20475 0.79898 0.84056 0.84621 1.90917 1.40106 1.28454 1.86641 1.48457 1.47001 1.34840 1.03355 1.23104 0.94005 0.87790 0.98879 1.22848 1.03330 0.95809 0.94363 1.22783 1.01830 0.95883 0.95269 1.21929 0.97500 0.93839 0.84929 0.95346 1.21792 0.98685 0.93627 0.87172 1.47745 1.13832 1.60032 1.12436 1.22242 0.97299 1.04348 0.83452 1.20311 0.82137 0.77527 0.89108 1.90764 1.63023 1.57220 1.33171 1.23342 1.00222 1.04141 0.99139 1.85794 1.11597 1.78126 1.18411 1.23182 1.04058 1.46073 0.95594 0.89604 1.26218 0.95307 0.95338 1.02632 1.70215 1.08378 1.43380 1.33148 0.84895 0.77421 0.78698 0.76583 1.19337 1.20385 1.17713 0.85900 0.88015 0.92647 0.86594 0.87137 0.91171 0.86032 0.87530 0.90608 0.86467 0.93806 0.91374 0.90533 0.86938 0.86926 0.87545 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.42 8.90 71.98 0.64 0.22 16 2 C 0.00 0.03 2.45 -13.35 -0.03 0.00 16 3 H 0.19 0.43 7.95 -2.38 -0.02 0.41 16 4 C 0.24 5.60 13.88 89.44 1.24 6.84 16 5 N -0.48 -15.13 18.54 20.01 0.37 -14.75 16 6 C 0.52 11.54 7.03 87.66 0.62 12.15 16 7 O -0.58 -22.27 14.81 -3.01 -0.04 -22.32 16 8 N -0.60 -9.13 3.07 -788.05 -2.42 -11.55 16 9 C 0.08 0.13 5.10 86.86 0.44 0.57 16 10 C -0.13 -0.30 7.09 31.99 0.23 -0.08 16 11 C -0.12 -1.10 5.67 31.78 0.18 -0.92 16 12 C 0.12 2.56 3.10 45.34 0.14 2.70 16 13 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 14 C 0.11 2.76 4.80 86.38 0.41 3.17 16 15 N -0.61 -16.55 2.76 -846.74 -2.34 -18.89 16 16 C 0.07 1.05 9.95 127.77 1.27 2.32 16 17 C 0.52 21.36 7.65 87.66 0.67 22.03 16 18 O -0.56 -30.04 15.53 -3.02 -0.05 -30.09 16 19 C -0.12 -4.92 4.71 71.24 0.34 -4.58 16 20 S -0.17 -9.79 20.57 -56.49 -1.16 -10.95 16 21 C -0.54 -31.71 9.50 67.95 0.65 -31.07 16 22 H 0.09 4.60 7.80 -2.91 -0.02 4.58 16 23 C 0.01 0.54 5.49 84.86 0.47 1.01 16 24 N -0.91 -58.26 13.22 21.65 0.29 -57.98 16 25 Si 1.00 44.40 29.55 68.60 2.03 46.43 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 28 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 29 H 0.12 -0.51 4.77 -2.39 -0.01 -0.52 16 30 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.12 -0.51 7.09 -2.39 -0.02 -0.53 16 33 H 0.11 -0.44 7.26 -2.39 -0.02 -0.46 16 34 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.12 -0.43 8.14 -2.39 -0.02 -0.44 16 36 H 0.11 0.41 6.34 -2.39 -0.02 0.39 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.12 1.83 7.90 -2.39 -0.02 1.81 16 39 H 0.04 1.61 5.98 -2.39 -0.01 1.59 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.23 6.44 -2.38 -0.02 1.21 16 42 H 0.11 0.78 6.17 -2.38 -0.01 0.76 16 43 H 0.11 4.13 7.40 -2.40 -0.02 4.11 16 44 H 0.11 4.04 8.11 -2.39 -0.02 4.02 16 45 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -106.89 383.22 4.95 -101.95 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.01 Total: 3.76 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 7.26 Total: 14.38 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -4.10 Total: -103.17 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.09 Total: -52.41 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -9.79 SS G_CDS: -1.16 Total: -10.95 kcal Total: -106.89 4.95 -101.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677731455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.779 kcal (2) G-P(sol) polarization free energy of solvation -106.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds