Wall clock time and date at job start Sat Apr 11 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.47198 * 109.47136 * 240.00123 * 2 1 3 5 5 N 2.60799 * 109.47072 * 240.00088 * 2 1 3 6 6 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 7 7 O 1.21283 * 120.00363 * 120.00014 * 6 2 1 8 8 N 1.34784 * 119.99988 * 300.00132 * 6 2 1 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 2 10 10 C 1.53000 * 109.47099 * 274.99655 * 9 8 6 11 11 C 1.53002 * 109.47317 * 300.00193 * 10 9 8 12 12 C 1.53001 * 109.47104 * 300.00216 * 11 10 9 13 13 N 1.46500 * 109.46917 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99988 * 84.99763 * 13 12 11 15 15 O 1.21285 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00053 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47003 * 180.02562 * 16 14 13 18 18 C 1.76208 * 99.99687 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00005 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99579 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00396 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99820 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47113 * 89.99886 * 22 20 18 24 24 H 1.48498 * 109.47071 * 210.00051 * 22 20 18 25 25 H 1.48501 * 109.47076 * 330.00138 * 22 20 18 26 26 C 1.52997 * 109.47203 * 59.99344 * 12 11 10 27 27 C 1.52996 * 109.47222 * 155.00033 * 9 8 6 28 28 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 30 30 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 31 31 H 0.97000 * 119.99339 * 0.02562 * 8 6 2 32 32 H 1.08999 * 109.47597 * 34.99540 * 9 8 6 33 33 H 1.09008 * 109.47230 * 60.00254 * 10 9 8 34 34 H 1.09003 * 109.47308 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47034 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.46649 * 59.99988 * 11 10 9 37 37 H 1.09003 * 109.46767 * 299.99654 * 12 11 10 38 38 H 0.96991 * 119.99772 * 264.99725 * 13 12 11 39 39 H 1.09001 * 109.47160 * 300.00175 * 16 14 13 40 40 H 1.09000 * 109.47328 * 59.99994 * 16 14 13 41 41 H 0.96999 * 120.00618 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.46776 * 179.97438 * 26 12 11 43 43 H 1.09003 * 109.47006 * 60.00457 * 26 12 11 44 44 H 1.08999 * 109.47829 * 179.97438 * 27 9 8 45 45 H 1.09003 * 109.47300 * 299.99847 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6965 1.1192 8 7 1.7068 -0.2499 2.4546 9 6 2.1902 -0.9440 3.6506 10 6 1.2406 -2.0942 3.9916 11 6 -0.1600 -1.5380 4.2559 12 6 -0.1062 -0.5564 5.4283 13 7 -1.4472 -0.0234 5.6808 14 6 -2.3082 -0.7069 6.4606 15 8 -1.9726 -1.7631 6.9535 16 6 -3.6875 -0.1584 6.7208 17 16 -4.5965 -1.2964 7.7955 18 6 -6.1263 -0.4327 7.9314 19 1 -6.2615 0.5097 7.4215 20 6 -7.1579 -0.9641 8.6928 21 7 -6.9934 -2.1130 9.3137 22 14 -8.7800 -0.0488 8.8363 23 1 -9.6919 -0.4840 7.7481 24 1 -9.4016 -0.3464 10.1517 25 1 -8.5360 1.4116 8.7232 26 6 0.8435 0.5937 5.0873 27 6 2.2440 0.0375 4.8231 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.1488 0.5385 2.5435 32 1 3.1880 -1.3403 3.4625 33 1 1.2023 -2.7935 3.1564 34 1 1.6001 -2.6104 4.8819 35 1 -0.8366 -2.3575 4.4984 36 1 -0.5197 -1.0215 3.3658 37 1 0.2535 -1.0729 6.3182 38 1 -1.7154 0.8214 5.2869 39 1 -3.6061 0.8135 7.2075 40 1 -4.2190 -0.0480 5.7756 41 1 -7.7142 -2.4842 9.8462 42 1 0.8814 1.2932 5.9224 43 1 0.4838 1.1102 4.1973 44 1 2.6033 -0.4790 5.7132 45 1 2.9205 0.8569 4.5802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688113121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:10 Heat of formation + Delta-G solvation = -65.459585 kcal Electronic energy + Delta-G solvation = -26528.807794 eV Core-core repulsion = 22671.812339 eV Total energy + Delta-G solvation = -3856.995455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99786 -39.64427 -38.21003 -36.88592 -34.94530 -34.06265 -32.53224 -32.45354 -31.20431 -29.99873 -27.99079 -25.86214 -25.50588 -23.10547 -22.92073 -21.91676 -20.34122 -19.63316 -18.63729 -17.86441 -17.76402 -16.53829 -16.41150 -16.00906 -15.81239 -15.33960 -14.92541 -14.83247 -14.66710 -14.35837 -14.14144 -13.99100 -13.55607 -13.38474 -13.20359 -13.13843 -12.97364 -12.85023 -12.59963 -12.58186 -12.45191 -12.35305 -12.03690 -11.95023 -11.60436 -11.23208 -11.09165 -11.05547 -10.84750 -10.75914 -10.67738 -10.33191 -9.84347 -9.55420 -9.39656 -9.09935 -8.92087 -8.26867 -6.53224 -6.24534 -3.95365 1.99910 2.05130 2.37652 2.84327 2.98631 3.04905 3.19886 3.25454 3.28907 3.30791 3.64942 4.08003 4.17513 4.24166 4.31207 4.31810 4.40025 4.55770 4.75365 4.85109 4.92743 5.01849 5.05108 5.07111 5.10687 5.13433 5.21871 5.29281 5.44353 5.48682 5.58145 5.62526 5.63621 5.72527 5.84298 5.91163 6.01655 6.08904 6.09863 6.15936 6.61484 6.88702 7.13669 7.56422 7.64517 7.66159 8.32062 8.57685 9.20790 10.82813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.002043 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.615874 B =13701.042525 C =14489.453287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.012 4.012 3 H 0.141 0.859 4 C 0.220 3.780 5 N -0.411 5.411 6 C 0.523 3.477 7 O -0.526 6.526 8 N -0.714 5.714 9 C 0.145 3.855 10 C -0.129 4.129 11 C -0.128 4.128 12 C 0.145 3.855 13 N -0.736 5.736 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.402 0.598 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.173 11.494 -14.449 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.086 5.086 6 C 0.306 3.694 7 O -0.401 6.401 8 N -0.368 5.368 9 C 0.041 3.959 10 C -0.168 4.168 11 C -0.167 4.167 12 C 0.040 3.960 13 N -0.390 5.390 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.165 4.165 27 C -0.161 4.161 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.238 0.762 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.740 8.051 -14.960 26.044 hybrid contribution -2.066 2.811 -0.251 3.497 sum 17.674 10.862 -15.211 25.725 Atomic orbital electron populations 1.21829 0.89348 1.04674 1.04567 1.18856 0.98937 1.00154 0.85693 0.84200 1.28068 0.93873 0.94013 0.94004 1.81213 1.07657 1.07673 1.12021 1.19980 0.80461 0.84679 0.84244 1.90804 1.37199 1.25633 1.86488 1.46014 1.53708 1.31968 1.05063 1.21061 0.98736 0.92634 0.83474 1.21905 0.94937 0.97425 1.02533 1.21910 0.97101 0.99739 0.97953 1.20913 0.82234 0.94028 0.98785 1.46068 1.14223 1.25744 1.52935 1.20313 0.86156 0.84426 0.77246 1.90708 1.77272 1.21933 1.49031 1.23535 0.95632 1.05594 1.05696 1.85421 1.10747 1.27483 1.59740 1.22858 0.99357 1.09735 1.36458 0.90945 1.24995 0.98828 0.95118 0.94668 1.70011 1.33130 1.17362 1.29727 0.86170 0.81949 0.79653 0.77740 1.20271 1.20751 1.19704 1.21815 0.94774 0.97890 1.02057 1.21790 0.96939 0.99197 0.98213 0.90773 0.89811 0.90076 0.76201 0.88933 0.91055 0.90398 0.90850 0.91933 0.89281 0.77030 0.89298 0.89310 0.92160 0.90539 0.91729 0.89594 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 9.04 37.16 0.34 -0.01 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.03 8.14 -51.93 -0.42 -0.40 16 4 C 0.22 1.90 13.88 -20.76 -0.29 1.62 16 5 N -0.41 -4.94 18.54 42.15 0.78 -4.16 16 6 C 0.52 3.51 7.10 -10.98 -0.08 3.43 16 7 O -0.53 -6.18 15.69 5.56 0.09 -6.09 16 8 N -0.71 -3.10 4.12 -53.81 -0.22 -3.33 16 9 C 0.14 0.85 2.79 -67.94 -0.19 0.66 16 10 C -0.13 -1.03 5.60 -26.73 -0.15 -1.18 16 11 C -0.13 -1.15 5.34 -26.73 -0.14 -1.30 16 12 C 0.15 1.31 2.45 -67.93 -0.17 1.14 16 13 N -0.74 -8.00 5.08 -53.80 -0.27 -8.27 16 14 C 0.53 9.00 7.81 -10.98 -0.09 8.91 16 15 O -0.52 -10.93 15.53 5.55 0.09 -10.84 16 16 C -0.15 -2.90 6.16 36.00 0.22 -2.67 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 19 H 0.07 1.89 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 22 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.13 -0.62 5.22 -26.73 -0.14 -0.76 16 27 C -0.12 -0.53 5.61 -26.73 -0.15 -0.68 16 28 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 29 H 0.08 0.03 7.56 -51.93 -0.39 -0.36 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.40 0.64 6.28 -40.82 -0.26 0.38 16 32 H 0.09 0.66 7.57 -51.93 -0.39 0.27 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.46 7.60 -51.92 -0.39 0.07 16 37 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 38 H 0.40 3.05 8.60 -40.82 -0.35 2.70 16 39 H 0.09 1.54 8.14 -51.91 -0.42 1.11 16 40 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.18 6.50 -51.93 -0.34 -0.16 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -38.80 390.11 -7.80 -46.61 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.71 Total: -3.11 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.93 Total: -3.81 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 1.02 Total: -40.76 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.17 Total: -16.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.80 -7.80 -46.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688113121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.852 kcal (2) G-P(sol) polarization free energy of solvation -38.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds