Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46826 * 2 1 4 4 C 1.47193 * 109.47215 * 239.99755 * 2 1 3 5 5 N 2.60790 * 109.47412 * 239.99693 * 2 1 3 6 6 C 1.50702 * 109.47399 * 119.99151 * 2 1 3 7 7 O 1.21277 * 120.00072 * 120.00300 * 6 2 1 8 8 N 1.34781 * 119.99836 * 300.00541 * 6 2 1 9 9 C 1.46501 * 119.99506 * 174.90580 * 8 6 2 10 10 C 1.53003 * 110.01803 * 65.11612 * 9 8 6 11 11 N 1.46500 * 109.47089 * 55.04008 * 10 9 8 12 12 C 1.34772 * 120.00030 * 174.96353 * 11 10 9 13 13 O 1.21278 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99779 * 179.72422 * 12 11 10 15 15 S 1.81000 * 109.46894 * 180.26813 * 14 12 11 16 16 C 1.76198 * 100.00009 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99932 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00172 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46895 * 60.00433 * 20 18 16 22 22 H 1.48508 * 109.46794 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47205 * 300.00111 * 20 18 16 24 24 C 1.54270 * 110.07271 * 186.53456 * 9 8 6 25 25 C 1.54888 * 104.19721 * 95.69543 * 24 9 8 26 26 C 1.54885 * 102.74609 * 37.94569 * 25 24 9 27 27 C 1.53872 * 110.03340 * 303.72207 * 9 8 6 28 28 H 1.08998 * 109.47336 * 60.00565 * 1 2 3 29 29 H 1.08998 * 109.46626 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47428 * 300.00293 * 1 2 3 31 31 H 0.96993 * 120.00011 * 354.90465 * 8 6 2 32 32 H 1.09003 * 109.46693 * 295.04004 * 10 9 8 33 33 H 1.08999 * 109.46828 * 175.03682 * 10 9 8 34 34 H 0.97005 * 120.00002 * 354.95154 * 11 10 9 35 35 H 1.08991 * 109.46997 * 300.26745 * 14 12 11 36 36 H 1.08997 * 109.47451 * 60.27515 * 14 12 11 37 37 H 0.96994 * 120.00030 * 179.97438 * 19 18 16 38 38 H 1.08999 * 110.48658 * 214.38065 * 24 9 8 39 39 H 1.09000 * 110.48285 * 337.01841 * 24 9 8 40 40 H 1.09000 * 110.75811 * 279.62760 * 25 24 9 41 41 H 1.09000 * 110.75205 * 156.26157 * 25 24 9 42 42 H 1.09001 * 110.48386 * 203.37522 * 26 25 24 43 43 H 1.08996 * 110.49067 * 80.73636 * 26 25 24 44 44 H 1.09002 * 110.03621 * 359.95676 * 27 9 8 45 45 H 1.09008 * 110.02975 * 121.38337 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1292 6 6 2.0324 -0.7102 1.2306 7 8 2.7297 -1.6962 1.1194 8 7 1.7067 -0.2496 2.4546 9 6 2.1006 -1.0014 3.6488 10 6 3.6253 -1.0239 3.7743 11 7 4.1365 0.3490 3.7628 12 6 5.4487 0.5811 3.9640 13 8 6.2063 -0.3464 4.1550 14 6 5.9755 1.9930 3.9460 15 16 7.7619 1.9740 4.2369 16 6 8.1020 3.7014 4.1647 17 1 7.3007 4.4024 3.9837 18 6 9.3997 4.1612 4.3417 19 7 10.3763 3.3068 4.5629 20 14 9.7603 5.9924 4.2645 21 1 8.9841 6.6945 5.3179 22 1 11.2113 6.2208 4.4829 23 1 9.3723 6.5176 2.9307 24 6 1.4761 -0.3626 4.9065 25 6 0.1845 -1.1828 5.1477 26 6 0.6212 -2.6232 4.7823 27 6 1.5569 -2.4387 3.5698 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.2117 0.5796 2.5449 32 1 4.0506 -1.5770 2.9369 33 1 3.9057 -1.5082 4.7097 34 1 3.5305 1.0909 3.6103 35 1 5.7702 2.4450 2.9758 36 1 5.4863 2.5734 4.7282 37 1 11.2831 3.6282 4.6861 38 1 2.1515 -0.4555 5.7569 39 1 1.2345 0.6842 4.7227 40 1 -0.6167 -0.8437 4.4912 41 1 -0.1202 -1.1249 6.1927 42 1 -0.2444 -3.2262 4.5079 43 1 1.1585 -3.0813 5.6127 44 1 0.9994 -2.5768 2.6434 45 1 2.3794 -3.1523 3.6209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688798351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -57.757928 kcal Electronic energy + Delta-G solvation = -27131.605350 eV Core-core repulsion = 23274.943864 eV Total energy + Delta-G solvation = -3856.661486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16890 -39.17067 -38.32666 -36.73601 -34.60439 -34.22705 -33.01176 -32.42660 -30.19519 -29.25645 -28.32199 -25.81659 -25.50747 -24.47260 -22.19007 -21.35263 -20.26907 -19.69849 -18.42952 -17.91569 -17.57183 -16.72589 -16.38529 -15.90252 -15.68825 -15.19716 -15.11048 -14.80492 -14.68980 -14.27015 -14.10350 -13.89474 -13.66472 -13.40809 -13.15597 -13.07857 -12.83531 -12.72747 -12.62919 -12.34312 -12.27685 -11.91636 -11.81742 -11.70556 -11.51961 -11.44721 -11.25567 -11.04628 -11.04169 -10.94905 -10.77146 -10.13976 -9.83334 -9.55630 -9.34869 -9.06174 -8.80936 -8.22845 -6.49455 -6.21166 -3.91867 2.10391 2.12569 2.50704 2.88350 3.06209 3.13896 3.22966 3.27518 3.31134 3.40424 3.71080 3.97903 4.15215 4.20594 4.25218 4.30577 4.38153 4.50828 4.80706 4.92786 4.99206 5.03218 5.09434 5.13581 5.13704 5.18564 5.27082 5.30647 5.42063 5.48333 5.55268 5.61068 5.68386 5.72032 5.84050 5.87605 5.93125 5.99016 6.11831 6.17960 6.62669 6.96408 7.26390 7.58822 7.71004 7.74838 8.34791 8.64871 9.23687 10.86200 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.002721 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.958975 B =10286.042816 C =11521.878184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 H 0.141 0.859 4 C 0.218 3.782 5 N -0.408 5.408 6 C 0.524 3.476 7 O -0.511 6.511 8 N -0.717 5.717 9 C 0.167 3.833 10 C 0.114 3.886 11 N -0.734 5.734 12 C 0.530 3.470 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.118 4.118 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.402 0.598 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.393 0.607 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.327 -4.834 -1.524 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.159 0.841 4 C -0.101 4.101 5 N -0.083 5.083 6 C 0.308 3.692 7 O -0.385 6.385 8 N -0.370 5.370 9 C 0.081 3.919 10 C -0.011 4.011 11 N -0.388 5.388 12 C 0.316 3.684 13 O -0.389 6.389 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.164 4.164 27 C -0.157 4.157 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.238 0.762 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.226 0.774 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.762 -7.985 -2.659 28.054 hybrid contribution -1.205 3.301 0.012 3.514 sum -27.966 -4.684 -2.647 28.479 Atomic orbital electron populations 1.21789 0.89561 1.04242 1.04420 1.18852 0.98676 1.00452 0.85764 0.84113 1.28019 0.93990 0.94090 0.94034 1.81216 1.07264 1.07729 1.12043 1.19951 0.80291 0.84947 0.84039 1.90819 1.35400 1.25935 1.86329 1.46079 1.58830 1.27287 1.04829 1.21318 0.93728 0.92631 0.84240 1.21809 0.91256 0.84560 1.03507 1.45853 1.08949 1.08166 1.75875 1.20289 0.81321 0.91206 0.75588 1.90714 1.56143 1.45321 1.46739 1.23513 1.06688 0.95269 1.04803 1.85452 0.93910 1.10255 1.93648 1.22825 0.96588 0.91930 1.57170 0.91015 1.24993 0.95109 0.98923 0.94543 1.70006 1.00644 1.34357 1.45233 0.86230 0.77441 0.83116 0.78738 1.19939 1.20813 1.19956 1.22716 0.97615 0.99435 0.96566 1.22505 0.96846 0.95081 1.01628 1.22407 0.99093 0.96964 0.97923 1.22411 0.99680 0.94623 0.98968 0.90226 0.91072 0.89878 0.76221 0.89910 0.90583 0.77384 0.89440 0.89336 0.92112 0.89296 0.90607 0.91328 0.91096 0.91439 0.91179 0.90790 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.30 9.05 37.16 0.34 0.04 16 2 C -0.01 -0.07 3.10 -94.56 -0.29 -0.36 16 3 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 4 C 0.22 2.25 13.88 -20.76 -0.29 1.96 16 5 N -0.41 -5.63 18.54 42.15 0.78 -4.85 16 6 C 0.52 4.18 6.18 -10.98 -0.07 4.12 16 7 O -0.51 -6.73 13.30 5.56 0.07 -6.66 16 8 N -0.72 -3.68 4.35 -46.57 -0.20 -3.88 16 9 C 0.17 1.19 0.57 -130.70 -0.07 1.11 16 10 C 0.11 1.33 4.05 -4.04 -0.02 1.32 16 11 N -0.73 -9.21 5.23 -60.29 -0.32 -9.52 16 12 C 0.53 9.81 7.85 -10.99 -0.09 9.73 16 13 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 14 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 20 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.13 -0.64 5.75 -25.07 -0.14 -0.78 16 25 C -0.12 -0.53 6.91 -24.74 -0.17 -0.70 16 26 C -0.13 -0.70 6.83 -25.07 -0.17 -0.88 16 27 C -0.12 -0.89 5.22 -25.61 -0.13 -1.03 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 -0.03 7.69 -51.93 -0.40 -0.43 16 31 H 0.40 0.61 7.81 -40.82 -0.32 0.29 16 32 H 0.08 1.26 6.56 -51.93 -0.34 0.92 16 33 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 34 H 0.39 3.54 7.99 -40.82 -0.33 3.21 16 35 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 36 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.09 0.58 7.78 -51.93 -0.40 0.17 16 39 H 0.08 0.25 7.70 -51.93 -0.40 -0.15 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.60 6.99 -51.93 -0.36 0.24 16 45 H 0.08 0.73 7.67 -51.92 -0.40 0.33 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -39.97 390.11 -7.60 -47.58 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.72 Total: -2.42 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.69 Total: -1.19 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 1.00 Total: -43.76 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.16 Total: -18.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.97 -7.60 -47.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688798351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.182 kcal (2) G-P(sol) polarization free energy of solvation -39.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds