Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46945 * 2 1 4 4 C 1.47193 * 109.47210 * 120.00110 * 2 1 3 5 5 N 2.60790 * 109.47162 * 120.00321 * 2 1 3 6 6 C 1.50702 * 109.46641 * 240.00245 * 2 1 3 7 7 O 1.21277 * 120.00072 * 239.99827 * 6 2 1 8 8 N 1.34781 * 119.99836 * 60.00068 * 6 2 1 9 9 C 1.46501 * 119.99506 * 174.90580 * 8 6 2 10 10 C 1.53001 * 110.01595 * 65.23016 * 9 8 6 11 11 N 1.46496 * 109.47075 * 55.30677 * 10 9 8 12 12 C 1.34780 * 119.99786 * 174.95562 * 11 10 9 13 13 O 1.21285 * 120.00185 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99972 * 179.72752 * 12 11 10 15 15 S 1.81001 * 109.47205 * 180.27704 * 14 12 11 16 16 C 1.76203 * 100.00140 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99641 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99948 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99933 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47221 * 60.00707 * 20 18 16 22 22 H 1.48502 * 109.46803 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47487 * 300.00156 * 20 18 16 24 24 C 1.54271 * 110.07017 * 186.64580 * 9 8 6 25 25 C 1.54882 * 104.19495 * 95.70018 * 24 9 8 26 26 C 1.54894 * 102.75337 * 37.94216 * 25 24 9 27 27 C 1.53871 * 110.03504 * 303.83541 * 9 8 6 28 28 H 1.08998 * 109.46904 * 299.99839 * 1 2 3 29 29 H 1.09002 * 109.47337 * 59.99249 * 1 2 3 30 30 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 31 31 H 0.96991 * 119.99933 * 354.91133 * 8 6 2 32 32 H 1.09003 * 109.47143 * 295.30797 * 10 9 8 33 33 H 1.08998 * 109.46884 * 175.30926 * 10 9 8 34 34 H 0.96999 * 120.00686 * 354.95858 * 11 10 9 35 35 H 1.09004 * 109.46989 * 300.27257 * 14 12 11 36 36 H 1.08999 * 109.47366 * 60.27090 * 14 12 11 37 37 H 0.96996 * 120.00474 * 179.97438 * 19 18 16 38 38 H 1.09001 * 110.48159 * 214.37447 * 24 9 8 39 39 H 1.08999 * 110.48700 * 337.02093 * 24 9 8 40 40 H 1.09005 * 110.75814 * 279.62759 * 25 24 9 41 41 H 1.09000 * 110.75959 * 156.25855 * 25 24 9 42 42 H 1.08998 * 110.48950 * 203.38468 * 26 25 24 43 43 H 1.09000 * 110.48457 * 80.73041 * 26 25 24 44 44 H 1.09004 * 110.03485 * 359.95601 * 27 9 8 45 45 H 1.09008 * 110.03225 * 121.38492 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 6 2.0323 -0.7104 -1.2305 7 8 2.7295 -1.6965 -1.1194 8 7 1.7066 -0.2498 -2.4546 9 6 2.2842 -0.8717 -3.6487 10 6 1.7950 -2.3158 -3.7758 11 7 0.3302 -2.3372 -3.7720 12 6 -0.3273 -3.4959 -3.9760 13 8 0.2937 -4.5210 -4.1623 14 6 -1.8341 -3.5191 -3.9660 15 16 -2.4135 -5.2088 -4.2587 16 6 -4.1553 -4.9502 -4.1960 17 1 -4.5481 -3.9600 -4.0178 18 6 -5.0225 -6.0187 -4.3767 19 7 -4.5438 -7.2253 -4.5944 20 14 -6.8691 -5.7446 -4.3096 21 1 -7.2649 -4.7788 -5.3659 22 1 -7.5694 -7.0353 -4.5307 23 1 -7.2409 -5.2020 -2.9782 24 6 1.8924 -0.0684 -4.9062 25 6 3.0979 0.8741 -5.1456 26 6 4.3088 -0.0198 -4.7799 27 6 3.8205 -0.8407 -3.5684 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.0899 0.4934 -2.5449 32 1 2.1691 -2.9014 -2.9360 33 1 2.1622 -2.7430 -4.7089 34 1 -0.1666 -1.5176 -3.6228 35 1 -2.1964 -3.1734 -2.9978 36 1 -2.2128 -2.8641 -4.7506 37 1 -5.1497 -7.9721 -4.7204 38 1 1.7546 -0.7353 -5.7572 39 1 0.9867 0.5097 -4.7227 40 1 3.0461 1.7422 -4.4884 41 1 3.1463 1.1816 -6.1903 42 1 5.1664 0.5937 -4.5041 43 1 4.5611 -0.6789 -5.6106 44 1 4.1364 -0.3623 -2.6414 45 1 4.2176 -1.8546 -3.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688798352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -57.787426 kcal Electronic energy + Delta-G solvation = -27239.559768 eV Core-core repulsion = 23382.897002 eV Total energy + Delta-G solvation = -3856.662765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16605 -39.16580 -38.32867 -36.72975 -34.61750 -34.19677 -32.99967 -32.42995 -30.19329 -29.25438 -28.31407 -25.75435 -25.51420 -24.49225 -22.16062 -21.36351 -20.26862 -19.70493 -18.42182 -17.88618 -17.55703 -16.81726 -16.38391 -15.84815 -15.63000 -15.17521 -15.06472 -14.80728 -14.79227 -14.28520 -14.05740 -13.89546 -13.57882 -13.45958 -13.13610 -13.04539 -12.87092 -12.66809 -12.61993 -12.30082 -12.22046 -11.93011 -11.80623 -11.70944 -11.51907 -11.44643 -11.25206 -11.04883 -11.04415 -10.94918 -10.77380 -10.13231 -9.83577 -9.55550 -9.34899 -9.06435 -8.80940 -8.23031 -6.49699 -6.21383 -3.92135 2.10932 2.12316 2.50644 2.88804 3.06007 3.13735 3.22708 3.27355 3.30885 3.41611 3.70848 3.98367 4.16452 4.20359 4.26032 4.35117 4.37586 4.50435 4.80777 4.98135 5.01208 5.04601 5.13364 5.13512 5.17182 5.18754 5.27156 5.30884 5.47778 5.55306 5.57742 5.61152 5.68450 5.72024 5.84070 5.87246 5.93192 5.99079 6.11368 6.18120 6.62582 6.96568 7.26562 7.58548 7.70969 7.74982 8.34531 8.64780 9.23480 10.85986 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011737 B = 0.002840 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.007343 B = 9855.217317 C =11172.541003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 H 0.140 0.860 4 C 0.218 3.782 5 N -0.408 5.408 6 C 0.524 3.476 7 O -0.511 6.511 8 N -0.717 5.717 9 C 0.166 3.834 10 C 0.114 3.886 11 N -0.734 5.734 12 C 0.530 3.470 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.118 4.118 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.402 0.598 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.393 0.607 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.517 25.396 1.608 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 H 0.157 0.843 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.307 3.693 7 O -0.385 6.385 8 N -0.371 5.371 9 C 0.081 3.919 10 C -0.011 4.011 11 N -0.388 5.388 12 C 0.316 3.684 13 O -0.389 6.389 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.164 4.164 27 C -0.157 4.157 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.226 0.774 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.635 21.929 2.750 27.072 hybrid contribution -2.612 2.315 -0.027 3.490 sum 13.024 24.243 2.723 27.654 Atomic orbital electron populations 1.21843 0.89380 1.04919 1.04433 1.18854 0.98973 0.99961 0.85708 0.84297 1.28045 0.93974 0.94097 0.94050 1.81215 1.07610 1.07401 1.12052 1.19966 0.80708 0.84525 0.84063 1.90819 1.36906 1.24433 1.86342 1.46087 1.48930 1.37197 1.04837 1.21321 0.94040 0.92333 0.84248 1.21802 0.80810 0.94989 1.03500 1.45847 1.06392 1.10681 1.75882 1.20292 0.89638 0.82899 0.75582 1.90716 1.69048 1.32350 1.46809 1.23513 0.93573 1.08379 1.04793 1.85458 1.04171 0.99966 1.93672 1.22822 0.91137 0.97348 1.57195 0.91016 1.24988 0.99589 0.94437 0.94545 1.70004 1.35603 0.99396 1.45236 0.86233 0.82894 0.77679 0.78734 1.19939 1.20819 1.19955 1.22715 0.98695 0.98342 0.96579 1.22508 0.94267 0.97671 1.01637 1.22410 0.97867 0.98189 0.97930 1.22413 0.92492 1.01822 0.98973 0.90127 0.89876 0.90523 0.76225 0.89915 0.90592 0.77398 0.89441 0.89350 0.92111 0.89284 0.90611 0.91338 0.91084 0.91433 0.91165 0.90810 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.04 37.16 0.34 -0.22 16 2 C -0.01 -0.06 3.11 -94.56 -0.29 -0.35 16 3 H 0.14 0.16 8.14 -51.93 -0.42 -0.26 16 4 C 0.22 2.24 13.88 -20.76 -0.29 1.95 16 5 N -0.41 -5.63 18.54 42.15 0.78 -4.85 16 6 C 0.52 4.19 6.18 -10.98 -0.07 4.12 16 7 O -0.51 -6.73 13.30 5.56 0.07 -6.65 16 8 N -0.72 -3.71 4.43 -46.57 -0.21 -3.92 16 9 C 0.17 1.19 0.57 -130.70 -0.07 1.12 16 10 C 0.11 1.33 4.06 -4.04 -0.02 1.32 16 11 N -0.73 -9.10 5.23 -60.29 -0.32 -9.42 16 12 C 0.53 9.74 7.85 -10.98 -0.09 9.65 16 13 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 14 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 20 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.13 -0.65 5.73 -25.07 -0.14 -0.79 16 25 C -0.12 -0.54 6.91 -24.74 -0.17 -0.71 16 26 C -0.13 -0.72 6.83 -25.07 -0.17 -0.89 16 27 C -0.12 -0.90 5.22 -25.61 -0.13 -1.04 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.08 7.46 -51.93 -0.39 -0.31 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.40 0.64 7.51 -40.82 -0.31 0.33 16 32 H 0.08 1.25 6.56 -51.93 -0.34 0.91 16 33 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 34 H 0.39 3.48 8.00 -40.82 -0.33 3.16 16 35 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 36 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 38 H 0.09 0.58 7.79 -51.93 -0.40 0.17 16 39 H 0.08 0.25 7.70 -51.93 -0.40 -0.15 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.61 6.99 -51.93 -0.36 0.24 16 45 H 0.08 0.74 7.67 -51.92 -0.40 0.34 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -39.80 389.65 -7.59 -47.39 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.69 Total: -2.09 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.69 Total: -1.45 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.99 Total: -43.63 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.16 Total: -18.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.80 -7.59 -47.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688798352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.401 kcal (2) G-P(sol) polarization free energy of solvation -39.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds