Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46945 * 2 1 4 4 C 1.47193 * 109.47210 * 120.00110 * 2 1 3 5 5 N 2.60790 * 109.47162 * 120.00321 * 2 1 3 6 6 C 1.50702 * 109.46641 * 240.00245 * 2 1 3 7 7 O 1.21277 * 120.00072 * 239.99827 * 6 2 1 8 8 N 1.34781 * 119.99836 * 60.00068 * 6 2 1 9 9 C 1.46501 * 119.99506 * 174.90580 * 8 6 2 10 10 C 1.53001 * 110.01595 * 65.23016 * 9 8 6 11 11 N 1.46496 * 109.47075 * 55.30677 * 10 9 8 12 12 C 1.34780 * 119.99786 * 174.95562 * 11 10 9 13 13 O 1.21285 * 120.00185 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99972 * 179.72752 * 12 11 10 15 15 S 1.81001 * 109.47205 * 180.27704 * 14 12 11 16 16 C 1.76203 * 100.00140 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99641 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00204 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99948 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99933 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47221 * 60.00707 * 20 18 16 22 22 H 1.48502 * 109.46803 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47487 * 300.00156 * 20 18 16 24 24 C 1.54271 * 110.07017 * 186.64580 * 9 8 6 25 25 C 1.54882 * 104.19495 * 95.70018 * 24 9 8 26 26 C 1.54894 * 102.75337 * 37.94216 * 25 24 9 27 27 C 1.53871 * 110.03504 * 303.83541 * 9 8 6 28 28 H 1.08998 * 109.46904 * 299.99839 * 1 2 3 29 29 H 1.09002 * 109.47337 * 59.99249 * 1 2 3 30 30 H 1.08998 * 109.47356 * 180.02562 * 1 2 3 31 31 H 0.96991 * 119.99933 * 354.91133 * 8 6 2 32 32 H 1.09003 * 109.47143 * 295.30797 * 10 9 8 33 33 H 1.08998 * 109.46884 * 175.30926 * 10 9 8 34 34 H 0.96999 * 120.00686 * 354.95858 * 11 10 9 35 35 H 1.09004 * 109.46989 * 300.27257 * 14 12 11 36 36 H 1.08999 * 109.47366 * 60.27090 * 14 12 11 37 37 H 0.96996 * 120.00474 * 179.97438 * 19 18 16 38 38 H 1.09001 * 110.48159 * 214.37447 * 24 9 8 39 39 H 1.08999 * 110.48700 * 337.02093 * 24 9 8 40 40 H 1.09005 * 110.75814 * 279.62759 * 25 24 9 41 41 H 1.09000 * 110.75959 * 156.25855 * 25 24 9 42 42 H 1.08998 * 110.48950 * 203.38468 * 26 25 24 43 43 H 1.09000 * 110.48457 * 80.73041 * 26 25 24 44 44 H 1.09004 * 110.03485 * 359.95601 * 27 9 8 45 45 H 1.09008 * 110.03225 * 121.38492 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 6 2.0323 -0.7104 -1.2305 7 8 2.7295 -1.6965 -1.1194 8 7 1.7066 -0.2498 -2.4546 9 6 2.2842 -0.8717 -3.6487 10 6 1.7950 -2.3158 -3.7758 11 7 0.3302 -2.3372 -3.7720 12 6 -0.3273 -3.4959 -3.9760 13 8 0.2937 -4.5210 -4.1623 14 6 -1.8341 -3.5191 -3.9660 15 16 -2.4135 -5.2088 -4.2587 16 6 -4.1553 -4.9502 -4.1960 17 1 -4.5481 -3.9600 -4.0178 18 6 -5.0225 -6.0187 -4.3767 19 7 -4.5438 -7.2253 -4.5944 20 14 -6.8691 -5.7446 -4.3096 21 1 -7.2649 -4.7788 -5.3659 22 1 -7.5694 -7.0353 -4.5307 23 1 -7.2409 -5.2020 -2.9782 24 6 1.8924 -0.0684 -4.9062 25 6 3.0979 0.8741 -5.1456 26 6 4.3088 -0.0198 -4.7799 27 6 3.8205 -0.8407 -3.5684 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.0899 0.4934 -2.5449 32 1 2.1691 -2.9014 -2.9360 33 1 2.1622 -2.7430 -4.7089 34 1 -0.1666 -1.5176 -3.6228 35 1 -2.1964 -3.1734 -2.9978 36 1 -2.2128 -2.8641 -4.7506 37 1 -5.1497 -7.9721 -4.7204 38 1 1.7546 -0.7353 -5.7572 39 1 0.9867 0.5097 -4.7227 40 1 3.0461 1.7422 -4.4884 41 1 3.1463 1.1816 -6.1903 42 1 5.1664 0.5937 -4.5041 43 1 4.5611 -0.6789 -5.6106 44 1 4.1364 -0.3623 -2.6414 45 1 4.2176 -1.8546 -3.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688798352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = -88.524461 kcal Electronic energy + Delta-G solvation = -27240.892626 eV Core-core repulsion = 23382.897002 eV Total energy + Delta-G solvation = -3857.995623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87607 -40.43108 -39.15050 -37.56580 -35.58853 -35.03708 -34.56620 -33.63888 -31.49085 -29.78598 -29.29950 -27.65113 -26.18536 -25.39593 -22.81650 -22.00869 -21.46306 -20.47153 -19.77525 -19.03302 -18.13875 -17.87069 -17.65408 -16.86280 -16.79956 -16.51277 -16.23408 -15.93330 -15.55884 -15.46009 -15.09842 -14.92933 -14.57960 -14.42564 -14.19101 -14.06794 -13.94549 -13.75127 -13.29510 -13.25567 -13.15137 -12.92402 -12.84069 -12.73863 -12.60575 -12.41561 -12.25514 -12.03269 -11.90317 -11.85042 -11.73291 -11.38217 -11.10886 -10.96884 -10.84458 -10.24670 -10.20690 -10.02939 -8.65634 -8.32521 -6.11164 1.28152 1.41065 1.45761 1.49208 1.49859 1.58106 1.64133 1.73217 2.20062 2.29430 2.37236 2.81585 3.01767 3.34118 3.43612 3.56423 3.74074 3.81248 3.96588 4.03296 4.19620 4.28261 4.32321 4.40228 4.51884 4.55001 4.58340 4.67749 4.79231 4.84328 4.87849 4.91108 4.91856 5.11497 5.13960 5.29373 5.31700 5.33647 5.40412 5.43349 5.54250 5.59043 6.21398 6.41601 6.53184 6.58669 7.08485 7.22400 7.28524 8.76530 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011737 B = 0.002840 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.007343 B = 9855.217317 C =11172.541003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.002 4.002 3 H 0.196 0.804 4 C 0.238 3.762 5 N -0.483 5.483 6 C 0.521 3.479 7 O -0.571 6.571 8 N -0.695 5.695 9 C 0.177 3.823 10 C 0.117 3.883 11 N -0.700 5.700 12 C 0.529 3.471 13 O -0.572 6.572 14 C -0.124 4.124 15 S -0.161 6.161 16 C -0.544 4.544 17 H 0.087 0.913 18 C 0.011 3.989 19 N -0.914 5.914 20 Si 1.000 3.000 21 H -0.258 1.258 22 H -0.283 1.283 23 H -0.261 1.261 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.125 4.125 27 C -0.118 4.118 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.045 0.955 31 H 0.427 0.573 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 30.579 0.954 32.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 H 0.213 0.787 4 C -0.080 4.080 5 N -0.159 5.159 6 C 0.306 3.694 7 O -0.449 6.449 8 N -0.350 5.350 9 C 0.090 3.910 10 C -0.008 4.008 11 N -0.354 5.354 12 C 0.315 3.685 13 O -0.451 6.451 14 C -0.275 4.275 15 S 0.066 5.934 16 C -0.691 4.691 17 H 0.105 0.895 18 C -0.193 4.193 19 N -0.551 5.551 20 Si 0.821 3.179 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.163 4.163 27 C -0.157 4.157 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.253 0.747 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.603 27.233 2.093 30.513 hybrid contribution -1.853 0.756 0.171 2.008 sum 11.750 27.988 2.265 30.439 Atomic orbital electron populations 1.21951 0.87547 1.03766 1.07238 1.19256 1.00065 1.01415 0.81863 0.78747 1.29086 0.92111 0.92631 0.94159 1.81219 1.10138 1.09747 1.14791 1.20487 0.79718 0.83759 0.85405 1.90829 1.39685 1.27186 1.87201 1.45867 1.48607 1.37209 1.03331 1.21144 0.93750 0.89849 0.86239 1.21805 0.79706 0.98040 1.01281 1.45469 1.06803 1.09811 1.73287 1.20193 0.89266 0.83607 0.75414 1.90708 1.69830 1.34742 1.49772 1.23336 0.94216 1.03131 1.06863 1.85737 1.05806 1.07626 1.94246 1.23182 0.90945 0.98149 1.56861 0.89478 1.26164 1.05449 0.93935 0.93785 1.70192 1.37614 1.00600 1.46656 0.84989 0.75546 0.77817 0.79554 1.18266 1.20786 1.18591 1.22731 1.00618 0.98190 0.94360 1.22495 0.92395 0.97543 1.02688 1.22412 0.99121 0.98211 0.96556 1.22368 0.92832 1.00544 0.99924 0.88674 0.85812 0.93604 0.73275 0.93666 0.91928 0.74660 0.87160 0.86495 0.92104 0.90569 0.87332 0.89247 0.90212 0.90593 0.91938 0.91172 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.04 71.98 0.65 0.14 16 2 C 0.00 -0.02 3.11 -13.35 -0.04 -0.06 16 3 H 0.20 -0.66 8.14 -2.38 -0.02 -0.68 16 4 C 0.24 4.77 13.88 89.44 1.24 6.02 16 5 N -0.48 -13.83 18.54 20.00 0.37 -13.46 16 6 C 0.52 7.31 6.18 87.66 0.54 7.85 16 7 O -0.57 -15.42 13.30 -3.02 -0.04 -15.47 16 8 N -0.69 -4.73 4.43 -419.64 -1.86 -6.59 16 9 C 0.18 2.19 0.57 4.33 0.00 2.20 16 10 C 0.12 2.76 4.06 86.38 0.35 3.11 16 11 N -0.70 -16.29 5.23 -463.06 -2.42 -18.71 16 12 C 0.53 19.35 7.85 87.66 0.69 20.04 16 13 O -0.57 -27.61 15.86 -3.04 -0.05 -27.66 16 14 C -0.12 -4.71 6.16 71.24 0.44 -4.27 16 15 S -0.16 -8.95 20.57 -56.49 -1.16 -10.12 16 16 C -0.54 -30.55 9.50 67.95 0.65 -29.90 16 17 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 18 C 0.01 0.63 5.49 84.86 0.47 1.10 16 19 N -0.91 -56.47 13.22 21.65 0.29 -56.19 16 20 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 C -0.12 -0.78 5.73 31.67 0.18 -0.60 16 25 C -0.11 -0.53 6.91 31.88 0.22 -0.31 16 26 C -0.13 -1.20 6.83 31.67 0.22 -0.98 16 27 C -0.12 -1.74 5.22 31.32 0.16 -1.58 16 28 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.12 -0.56 7.46 -2.39 -0.02 -0.58 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.43 -1.25 7.51 -92.71 -0.70 -1.95 16 32 H 0.04 1.47 6.56 -2.39 -0.02 1.45 16 33 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 34 H 0.42 5.74 8.00 -92.71 -0.74 5.00 16 35 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.08 0.77 7.79 -2.39 -0.02 0.75 16 39 H 0.11 0.04 7.70 -2.39 -0.02 0.02 16 40 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 41 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 1.10 6.99 -2.39 -0.02 1.08 16 45 H 0.05 1.00 7.67 -2.38 -0.02 0.99 16 Total: -1.00 -97.19 389.65 2.51 -94.68 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -0.41 Total: 5.83 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.77 Total: 2.74 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -3.62 Total: -94.94 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.09 Total: -43.13 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.12 kcal Total: -97.19 2.51 -94.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688798352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.151 kcal (2) G-P(sol) polarization free energy of solvation -97.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds