Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46673 * 2 1 4 4 C 1.53000 * 109.47130 * 120.00211 * 2 1 3 5 5 N 1.46503 * 109.46992 * 175.00071 * 4 2 1 6 6 C 1.34771 * 120.00095 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99808 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00421 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47631 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00479 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99797 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00492 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99665 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00293 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46809 * 60.00240 * 14 12 10 16 16 H 1.48492 * 109.47029 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47163 * 300.00448 * 14 12 10 18 18 N 1.46903 * 109.46862 * 240.00188 * 2 1 3 19 19 C 1.46904 * 110.99881 * 85.00126 * 18 2 1 20 20 C 1.50697 * 109.46726 * 179.97438 * 19 18 2 21 21 C 1.34327 * 126.16559 * 95.02335 * 20 19 18 22 22 O 1.34755 * 107.11469 * 179.97438 * 21 20 19 23 23 C 1.33967 * 107.75227 * 359.97438 * 22 21 20 24 24 C 1.50706 * 125.61514 * 179.97438 * 23 22 21 25 25 C 1.52995 * 117.50181 * 8.77508 * 24 23 22 26 26 C 1.52993 * 117.50081 * 300.11273 * 24 23 22 27 27 N 1.30249 * 108.76464 * 0.26658 * 23 22 21 28 28 H 1.09004 * 109.46861 * 300.00196 * 1 2 3 29 29 H 1.09005 * 109.47229 * 59.99741 * 1 2 3 30 30 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46938 * 294.99737 * 4 2 1 32 32 H 1.08997 * 109.46953 * 55.00060 * 4 2 1 33 33 H 0.97002 * 120.00243 * 0.02562 * 5 4 2 34 34 H 1.09002 * 109.47644 * 300.01039 * 8 6 5 35 35 H 1.09002 * 109.47078 * 59.99967 * 8 6 5 36 36 H 0.96997 * 119.99960 * 179.97438 * 13 12 10 37 37 H 1.00904 * 110.99729 * 208.95185 * 18 2 1 38 38 H 1.09002 * 109.47312 * 59.99924 * 19 18 2 39 39 H 1.09000 * 109.46850 * 299.99578 * 19 18 2 40 40 H 1.08003 * 126.44893 * 359.97438 * 21 20 19 41 41 H 1.08998 * 115.54512 * 154.44270 * 24 23 22 42 42 H 1.09000 * 117.49859 * 0.02562 * 25 24 23 43 43 H 1.08999 * 117.49900 * 145.01759 * 25 24 23 44 44 H 1.08998 * 117.50372 * 214.98309 * 26 24 23 45 45 H 1.09006 * 117.50059 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1910 7 8 3.5700 -1.8833 3.1398 8 6 5.6749 -1.5369 2.1304 9 16 6.2784 -2.3901 3.6083 10 6 8.0101 -2.3771 3.2836 11 1 8.3864 -1.9239 2.3783 12 6 8.8908 -2.9484 4.1915 13 7 8.4323 -3.5004 5.2950 14 14 10.7267 -2.9353 3.8469 15 1 11.1974 -1.5322 3.7248 16 1 11.4444 -3.6035 4.9620 17 1 10.9976 -3.6603 2.5795 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3469 20 6 2.5884 -0.5214 -3.5557 21 6 1.8331 -1.0947 -4.5072 22 8 2.6751 -1.6494 -5.4012 23 6 3.9264 -1.4090 -4.9876 24 6 5.1836 -1.8519 -5.6909 25 6 5.0351 -2.4613 -7.0863 26 6 5.3874 -3.3545 -5.8942 27 7 3.8774 -0.7348 -3.8742 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9825 -0.4621 0.4319 34 1 5.9630 -2.1004 1.2429 35 1 6.1099 -0.5385 2.0838 36 1 9.0477 -3.8999 5.9294 37 1 2.9173 -1.1205 -1.0288 38 1 2.7588 1.0463 -2.1182 39 1 1.0870 0.6164 -2.5525 40 1 0.7539 -1.1086 -4.5481 41 1 6.0685 -1.2455 -5.4981 42 1 4.0282 -2.5415 -7.4960 43 1 5.8226 -2.2562 -7.8115 44 1 6.4064 -3.7367 -5.8355 45 1 4.6124 -4.0229 -5.5189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690554820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = 12.679807 kcal Electronic energy + Delta-G solvation = -25853.822987 eV Core-core repulsion = 22000.215910 eV Total energy + Delta-G solvation = -3853.607077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.66130 -39.42372 -37.79700 -37.51074 -35.37414 -33.76842 -32.40761 -31.93122 -29.91451 -29.28901 -26.35641 -25.54534 -25.10590 -24.59300 -22.91590 -21.76078 -20.90632 -20.65625 -20.35044 -17.94715 -17.63275 -16.98626 -16.60946 -16.27048 -16.14836 -16.06559 -15.36696 -15.23002 -14.78420 -14.77441 -14.58383 -14.03831 -13.57315 -13.19011 -13.00389 -12.91070 -12.87177 -12.61239 -12.58118 -12.12006 -12.06361 -11.96620 -11.81226 -11.67670 -11.21018 -11.06063 -11.03736 -11.01923 -11.01587 -10.80670 -10.74398 -9.80535 -9.40478 -9.04829 -9.04096 -8.90648 -8.79126 -8.21865 -6.47675 -6.19360 -3.89808 1.09785 2.21253 2.36570 3.03430 3.10703 3.25279 3.25830 3.28963 3.32602 3.52977 3.70766 3.92590 4.22665 4.24854 4.33229 4.40223 4.49421 4.57791 4.65496 4.90693 5.02777 5.11655 5.13523 5.15636 5.16400 5.22443 5.27451 5.46533 5.47378 5.51115 5.55654 5.59427 5.60566 5.62958 5.67416 5.85183 5.90954 5.91889 6.02054 6.16941 6.56115 6.62897 6.99223 7.45023 7.61440 7.65161 8.37426 8.60751 9.25788 10.88080 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.002603 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.018381 B =10753.730601 C =13736.613180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.053 0.947 4 C 0.119 3.881 5 N -0.743 5.743 6 C 0.534 3.466 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.683 5.683 19 C 0.141 3.859 20 C -0.012 4.012 21 C -0.057 4.057 22 O -0.203 6.203 23 C 0.224 3.776 24 C -0.073 4.073 25 C -0.164 4.164 26 C -0.156 4.156 27 N -0.472 5.472 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.394 0.606 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.350 0.650 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.216 0.784 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 7.474 -25.393 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.071 0.929 4 C -0.006 4.006 5 N -0.398 5.398 6 C 0.320 3.680 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.318 5.318 19 C 0.011 3.989 20 C -0.132 4.132 21 C -0.128 4.128 22 O -0.089 6.089 23 C 0.018 3.982 24 C -0.092 4.092 25 C -0.201 4.201 26 C -0.194 4.194 27 N -0.201 5.201 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.171 0.829 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.233 0.767 41 H 0.164 0.836 42 H 0.121 0.879 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.238 6.549 -23.461 28.732 hybrid contribution 2.164 1.094 -1.765 2.999 sum -13.074 7.643 -25.226 29.423 Atomic orbital electron populations 1.21738 0.93247 1.02967 1.01635 1.21808 0.96877 0.96214 0.88734 0.92888 1.21505 0.80503 1.01648 0.96929 1.46063 1.07142 1.62137 1.24507 1.20287 0.89499 0.76639 0.81575 1.90705 1.69891 1.45831 1.32492 1.23534 0.93513 1.05669 1.07731 1.85374 1.04563 1.73151 1.20160 1.22834 0.91546 1.44350 1.09664 0.90977 1.24989 0.99578 0.94549 0.94451 1.70007 1.35507 1.35451 1.09381 0.86224 0.82786 0.78468 0.78031 1.19940 1.20818 1.19922 1.60573 1.34639 1.32639 1.03911 1.20190 1.00300 0.92319 0.86049 1.21578 0.88402 1.04002 0.99202 1.24763 0.96793 1.00485 0.90783 1.84407 1.17205 1.60930 1.46364 1.25056 0.84406 0.97166 0.91615 1.20252 0.91436 0.98325 0.99191 1.23118 1.04158 1.02547 0.90309 1.23162 1.04270 0.90897 1.01091 1.70294 1.21234 1.16325 1.12295 0.91970 0.92432 0.91469 0.90759 0.90607 0.77189 0.89179 0.89270 0.92142 0.82898 0.93142 0.89157 0.76728 0.83619 0.87918 0.87214 0.86931 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.41 37.16 0.35 -0.65 16 2 C 0.07 0.64 2.81 -67.71 -0.19 0.45 16 3 H 0.05 0.44 7.80 -51.93 -0.40 0.03 16 4 C 0.12 1.41 5.31 -4.04 -0.02 1.39 16 5 N -0.74 -10.31 4.99 -60.30 -0.30 -10.61 16 6 C 0.53 10.25 7.85 -10.99 -0.09 10.17 16 7 O -0.52 -11.95 15.86 5.55 0.09 -11.86 16 8 C -0.15 -3.20 6.16 36.00 0.22 -2.98 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 14 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 18 N -0.68 -6.45 6.29 -107.99 -0.68 -7.13 16 19 C 0.14 1.17 6.02 -4.98 -0.03 1.14 16 20 C -0.01 -0.12 6.62 -82.81 -0.55 -0.67 16 21 C -0.06 -0.49 12.08 29.35 0.35 -0.13 16 22 O -0.20 -2.00 10.47 5.35 0.06 -1.95 16 23 C 0.22 2.35 7.83 -12.95 -0.10 2.25 16 24 C -0.07 -0.56 6.33 -91.77 -0.58 -1.14 16 25 C -0.16 -0.90 10.17 -26.70 -0.27 -1.17 16 26 C -0.16 -1.00 10.24 -26.70 -0.27 -1.27 16 27 N -0.47 -5.66 11.29 -7.36 -0.08 -5.74 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 7.45 -51.93 -0.39 -0.03 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.39 4.60 7.37 -40.82 -0.30 4.30 16 34 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 35 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.35 3.88 6.70 -39.29 -0.26 3.62 16 38 H 0.05 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.09 0.57 7.44 -51.93 -0.39 0.18 16 40 H 0.22 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 0.58 7.96 -51.93 -0.41 0.17 16 43 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -36.23 397.76 -9.17 -45.40 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.77 Total: 4.64 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.98 Total: -5.78 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.33 Total: -49.20 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.14 Total: -13.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.23 -9.17 -45.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690554820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.080 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds