Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46673 * 2 1 4 4 C 1.53000 * 109.47130 * 120.00211 * 2 1 3 5 5 N 1.46503 * 109.46992 * 175.00071 * 4 2 1 6 6 C 1.34771 * 120.00095 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99808 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00421 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47631 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00479 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99797 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00492 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99665 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00293 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46809 * 60.00240 * 14 12 10 16 16 H 1.48492 * 109.47029 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47163 * 300.00448 * 14 12 10 18 18 N 1.46903 * 109.46862 * 240.00188 * 2 1 3 19 19 C 1.46904 * 110.99881 * 85.00126 * 18 2 1 20 20 C 1.50697 * 109.46726 * 179.97438 * 19 18 2 21 21 C 1.34327 * 126.16559 * 95.02335 * 20 19 18 22 22 O 1.34755 * 107.11469 * 179.97438 * 21 20 19 23 23 C 1.33967 * 107.75227 * 359.97438 * 22 21 20 24 24 C 1.50706 * 125.61514 * 179.97438 * 23 22 21 25 25 C 1.52995 * 117.50181 * 8.77508 * 24 23 22 26 26 C 1.52993 * 117.50081 * 300.11273 * 24 23 22 27 27 N 1.30249 * 108.76464 * 0.26658 * 23 22 21 28 28 H 1.09004 * 109.46861 * 300.00196 * 1 2 3 29 29 H 1.09005 * 109.47229 * 59.99741 * 1 2 3 30 30 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46938 * 294.99737 * 4 2 1 32 32 H 1.08997 * 109.46953 * 55.00060 * 4 2 1 33 33 H 0.97002 * 120.00243 * 0.02562 * 5 4 2 34 34 H 1.09002 * 109.47644 * 300.01039 * 8 6 5 35 35 H 1.09002 * 109.47078 * 59.99967 * 8 6 5 36 36 H 0.96997 * 119.99960 * 179.97438 * 13 12 10 37 37 H 1.00904 * 110.99729 * 208.95185 * 18 2 1 38 38 H 1.09002 * 109.47312 * 59.99924 * 19 18 2 39 39 H 1.09000 * 109.46850 * 299.99578 * 19 18 2 40 40 H 1.08003 * 126.44893 * 359.97438 * 21 20 19 41 41 H 1.08998 * 115.54512 * 154.44270 * 24 23 22 42 42 H 1.09000 * 117.49859 * 0.02562 * 25 24 23 43 43 H 1.08999 * 117.49900 * 145.01759 * 25 24 23 44 44 H 1.08998 * 117.50372 * 214.98309 * 26 24 23 45 45 H 1.09006 * 117.50059 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1910 7 8 3.5700 -1.8833 3.1398 8 6 5.6749 -1.5369 2.1304 9 16 6.2784 -2.3901 3.6083 10 6 8.0101 -2.3771 3.2836 11 1 8.3864 -1.9239 2.3783 12 6 8.8908 -2.9484 4.1915 13 7 8.4323 -3.5004 5.2950 14 14 10.7267 -2.9353 3.8469 15 1 11.1974 -1.5322 3.7248 16 1 11.4444 -3.6035 4.9620 17 1 10.9976 -3.6603 2.5795 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3469 20 6 2.5884 -0.5214 -3.5557 21 6 1.8331 -1.0947 -4.5072 22 8 2.6751 -1.6494 -5.4012 23 6 3.9264 -1.4090 -4.9876 24 6 5.1836 -1.8519 -5.6909 25 6 5.0351 -2.4613 -7.0863 26 6 5.3874 -3.3545 -5.8942 27 7 3.8774 -0.7348 -3.8742 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9825 -0.4621 0.4319 34 1 5.9630 -2.1004 1.2429 35 1 6.1099 -0.5385 2.0838 36 1 9.0477 -3.8999 5.9294 37 1 2.9173 -1.1205 -1.0288 38 1 2.7588 1.0463 -2.1182 39 1 1.0870 0.6164 -2.5525 40 1 0.7539 -1.1086 -4.5481 41 1 6.0685 -1.2455 -5.4981 42 1 4.0282 -2.5415 -7.4960 43 1 5.8226 -2.2562 -7.8115 44 1 6.4064 -3.7367 -5.8355 45 1 4.6124 -4.0229 -5.5189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690554820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = -15.533820 kcal Electronic energy + Delta-G solvation = -25855.046421 eV Core-core repulsion = 22000.215910 eV Total energy + Delta-G solvation = -3854.830512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.35924 -40.80586 -38.67062 -38.10628 -36.20632 -34.91241 -34.59377 -32.79308 -31.03218 -30.35999 -27.75730 -27.09429 -26.08792 -25.20765 -23.37336 -22.46890 -21.86357 -21.67182 -21.27470 -19.86978 -18.37868 -17.94207 -17.70512 -17.49439 -17.05038 -16.88867 -16.77881 -16.39969 -16.08497 -15.86389 -15.80310 -15.20803 -14.74875 -14.55231 -14.27164 -14.08989 -13.59946 -13.55105 -13.30688 -13.18559 -13.14710 -12.91220 -12.86919 -12.63516 -12.61213 -12.49410 -12.41292 -11.94431 -11.74924 -11.68422 -11.56734 -11.51144 -11.13956 -11.02387 -10.31084 -10.21538 -9.71061 -9.48973 -8.68630 -8.35533 -6.14166 0.42399 1.24580 1.43453 1.44919 1.49998 1.55365 1.55533 1.74139 2.20723 2.26900 2.71221 2.96865 2.98398 3.17862 3.30362 3.62707 3.71648 3.75395 3.90636 3.92618 3.98044 4.13676 4.16453 4.24829 4.32702 4.46419 4.51248 4.59643 4.61976 4.70575 4.74559 4.82329 4.89843 4.94054 4.97973 5.04161 5.06116 5.16117 5.23013 5.29747 5.40350 5.45454 5.93330 6.16350 6.18563 6.34985 6.74298 7.05387 7.14714 8.73584 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.002603 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.018381 B =10753.730601 C =13736.613180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.066 0.934 4 C 0.117 3.883 5 N -0.717 5.717 6 C 0.536 3.464 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.147 6.147 10 C -0.549 4.549 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.262 1.262 18 N -0.687 5.687 19 C 0.145 3.855 20 C -0.036 4.036 21 C -0.051 4.051 22 O -0.209 6.209 23 C 0.212 3.788 24 C -0.093 4.093 25 C -0.145 4.145 26 C -0.158 4.158 27 N -0.507 5.507 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.272 0.728 37 H 0.338 0.662 38 H 0.047 0.953 39 H 0.116 0.884 40 H 0.251 0.749 41 H 0.150 0.850 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 8.667 -27.954 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.025 4.025 3 H 0.084 0.916 4 C -0.006 4.006 5 N -0.372 5.372 6 C 0.322 3.678 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.081 5.919 10 C -0.697 4.697 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.186 1.186 18 N -0.321 5.321 19 C 0.017 3.983 20 C -0.155 4.155 21 C -0.122 4.122 22 O -0.096 6.096 23 C 0.006 3.994 24 C -0.112 4.112 25 C -0.182 4.182 26 C -0.196 4.196 27 N -0.237 5.237 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.157 0.843 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.267 0.733 41 H 0.168 0.832 42 H 0.119 0.881 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.199 7.778 -26.078 31.170 hybrid contribution 2.019 0.760 -1.054 2.401 sum -13.180 8.539 -27.133 31.350 Atomic orbital electron populations 1.21728 0.91683 1.02836 1.02960 1.21775 0.97871 0.96066 0.86812 0.91572 1.21673 0.78654 1.01442 0.98878 1.45811 1.08163 1.59959 1.23218 1.20015 0.88857 0.76872 0.82048 1.90693 1.70400 1.48245 1.34584 1.23372 0.94790 1.05744 1.04302 1.85530 1.05863 1.75078 1.25476 1.23171 0.91667 1.44634 1.10196 0.90039 1.26138 1.05292 0.93708 0.93959 1.70173 1.37537 1.36428 1.10596 0.85000 0.75587 0.79114 0.78276 1.18632 1.20246 1.18648 1.60638 1.33842 1.33179 1.04431 1.20266 1.01508 0.91593 0.84970 1.21918 0.88133 1.05092 1.00338 1.25461 0.98021 0.98953 0.89773 1.84417 1.17320 1.61101 1.46758 1.25573 0.85234 0.97000 0.91611 1.20442 0.90746 0.99134 1.00890 1.23205 1.04759 1.00574 0.89696 1.23217 1.04701 0.89996 1.01646 1.70268 1.22596 1.17510 1.13282 0.91188 0.90580 0.92342 0.90852 0.91966 0.75522 0.87591 0.87344 0.91924 0.84258 0.93510 0.86629 0.73326 0.83221 0.88125 0.85044 0.85617 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.41 71.98 0.68 -0.93 16 2 C 0.08 1.30 2.81 44.92 0.13 1.42 16 3 H 0.07 0.89 7.80 -2.39 -0.02 0.87 16 4 C 0.12 2.67 5.31 86.38 0.46 3.13 16 5 N -0.72 -19.20 4.99 -463.07 -2.31 -21.51 16 6 C 0.54 20.59 7.85 87.66 0.69 21.28 16 7 O -0.56 -26.68 15.86 -3.05 -0.05 -26.73 16 8 C -0.13 -5.42 6.16 71.23 0.44 -4.98 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.49 16 10 C -0.55 -31.95 9.50 67.95 0.65 -31.31 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.80 5.49 84.86 0.47 1.27 16 13 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 14 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 18 N -0.69 -11.73 6.29 -495.56 -3.12 -14.85 16 19 C 0.15 2.12 6.02 85.56 0.52 2.63 16 20 C -0.04 -0.67 6.62 41.26 0.27 -0.40 16 21 C -0.05 -0.79 12.08 66.93 0.81 0.02 16 22 O -0.21 -3.94 10.47 -3.76 -0.04 -3.98 16 23 C 0.21 4.36 7.83 88.35 0.69 5.06 16 24 C -0.09 -1.37 6.33 -11.54 -0.07 -1.45 16 25 C -0.14 -1.38 10.17 30.62 0.31 -1.07 16 26 C -0.16 -1.88 10.24 30.62 0.31 -1.57 16 27 N -0.51 -11.94 11.29 -291.98 -3.30 -15.24 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.66 7.45 -2.38 -0.02 0.65 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.41 8.87 7.37 -92.71 -0.68 8.19 16 34 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 35 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.34 7.08 6.70 -89.69 -0.60 6.48 16 38 H 0.05 0.72 8.06 -2.39 -0.02 0.70 16 39 H 0.12 1.06 7.44 -2.39 -0.02 1.04 16 40 H 0.25 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.10 1.01 7.96 -2.39 -0.02 0.99 16 43 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -81.29 397.76 -1.59 -82.87 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.27 Total: 26.02 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.34 Total: -6.88 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -8.44 Total: -107.93 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.09 Total: -30.72 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -81.29 -1.59 -82.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690554820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.341 kcal (2) G-P(sol) polarization free energy of solvation -81.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds