Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47100 * 2 1 4 4 C 1.53002 * 109.47025 * 239.99808 * 2 1 3 5 5 N 1.46501 * 109.46954 * 185.00124 * 4 2 1 6 6 C 1.34780 * 119.99970 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99835 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00164 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.47225 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00028 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99579 * 0.02562 * 10 9 8 12 12 C 1.38793 * 119.99951 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00149 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00048 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47210 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47110 * 120.00266 * 14 12 10 17 17 H 1.48493 * 109.47486 * 240.00327 * 14 12 10 18 18 N 1.46910 * 109.47111 * 120.00096 * 2 1 3 19 19 C 1.46895 * 110.99757 * 275.00003 * 18 2 1 20 20 C 1.50699 * 109.47024 * 180.02562 * 19 18 2 21 21 C 1.34338 * 126.16787 * 94.97287 * 20 19 18 22 22 O 1.34745 * 107.11116 * 180.02562 * 21 20 19 23 23 C 1.33969 * 107.76163 * 0.02562 * 22 21 20 24 24 C 1.50697 * 125.62232 * 180.02562 * 23 22 21 25 25 C 1.53002 * 117.49992 * 351.27830 * 24 23 22 26 26 C 1.53000 * 117.50034 * 59.93603 * 24 23 22 27 27 N 1.30252 * 108.75545 * 0.26392 * 23 22 21 28 28 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47045 * 299.99689 * 1 2 3 30 30 H 1.08995 * 109.47076 * 60.00061 * 1 2 3 31 31 H 1.08991 * 109.47005 * 304.99867 * 4 2 1 32 32 H 1.09000 * 109.46641 * 65.00221 * 4 2 1 33 33 H 0.96999 * 120.00428 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.47074 * 299.99987 * 8 6 5 35 35 H 1.09007 * 109.46773 * 59.99384 * 8 6 5 36 36 H 0.96997 * 120.00024 * 180.02562 * 13 12 10 37 37 H 1.00901 * 110.99618 * 151.04213 * 18 2 1 38 38 H 1.08995 * 109.47544 * 59.99869 * 19 18 2 39 39 H 1.09008 * 109.47210 * 299.99848 * 19 18 2 40 40 H 1.07999 * 126.44051 * 359.97438 * 21 20 19 41 41 H 1.09002 * 115.54932 * 205.60667 * 24 23 22 42 42 H 1.09000 * 117.49996 * 215.00670 * 25 24 23 43 43 H 1.08999 * 117.49664 * 0.02562 * 25 24 23 44 44 H 1.09008 * 117.49673 * 359.97438 * 26 24 23 45 45 H 1.08999 * 117.49942 * 144.97208 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4284 -2.1911 7 8 3.5700 -1.8834 -3.1399 8 6 5.6750 -1.5361 -2.1311 9 16 6.2783 -2.3895 -3.6088 10 6 8.0102 -2.3753 -3.2847 11 1 8.3864 -1.9221 -2.3794 12 6 8.8908 -2.9474 -4.1923 13 7 8.4321 -3.5001 -5.2954 14 14 10.7269 -2.9317 -3.8491 15 1 10.9823 -2.2550 -2.5522 16 1 11.2307 -4.3272 -3.7864 17 1 11.4274 -2.2010 -4.9355 18 7 2.0197 -0.6926 1.1995 19 6 2.0825 0.2225 2.3469 20 6 2.5885 -0.5216 3.5557 21 6 3.8624 -0.5732 3.9790 22 8 3.8814 -1.3404 5.0866 23 6 2.6269 -1.7458 5.3244 24 6 2.1904 -2.6246 6.4682 25 6 3.2847 -3.2646 7.3249 26 6 2.4456 -2.1149 7.8880 27 7 1.8474 -1.2594 4.4012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.9825 -0.4622 -0.4319 34 1 6.1093 -0.5374 -2.0850 35 1 5.9637 -2.0990 -1.2434 36 1 9.0475 -3.9002 -5.9295 37 1 2.9173 -1.1206 1.0287 38 1 1.0871 0.6163 2.5525 39 1 2.7589 1.0462 2.1182 40 1 4.7117 -0.0912 3.5177 41 1 1.2827 -3.2032 6.2967 42 1 3.0970 -4.2641 7.7169 43 1 4.3203 -3.0496 7.0614 44 1 2.9296 -1.1440 7.9948 45 1 1.7056 -2.3577 8.6505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690554821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = 13.617703 kcal Electronic energy + Delta-G solvation = -25695.991679 eV Core-core repulsion = 21842.425272 eV Total energy + Delta-G solvation = -3853.566407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.66948 -39.46963 -37.83816 -37.54489 -35.37541 -33.81259 -32.44757 -31.99158 -29.89999 -29.30407 -26.38349 -25.58512 -25.13262 -24.63285 -22.97790 -21.80799 -20.91780 -20.60036 -20.42242 -18.01422 -17.66607 -17.03322 -16.69354 -16.25002 -16.17041 -16.10462 -15.45173 -15.20549 -14.82460 -14.81031 -14.28881 -14.14370 -13.90762 -13.30194 -13.05187 -12.90065 -12.85445 -12.65193 -12.49983 -12.13556 -12.11840 -11.90753 -11.83073 -11.71524 -11.24467 -11.10913 -11.08757 -11.04262 -10.99928 -10.78149 -10.77026 -9.82839 -9.45306 -9.09953 -9.07419 -8.95602 -8.78196 -8.25363 -6.52003 -6.23607 -3.94269 1.06836 2.20041 2.35651 2.98526 3.05781 3.19970 3.26224 3.27017 3.30521 3.45208 3.65211 3.89052 4.18228 4.19540 4.31605 4.35243 4.47665 4.54902 4.61690 4.89102 5.01697 5.07509 5.08361 5.11308 5.11616 5.17766 5.22127 5.42217 5.49092 5.53132 5.55029 5.56465 5.59928 5.60623 5.67634 5.84086 5.86910 5.90199 6.06040 6.09210 6.51379 6.63088 6.98271 7.46077 7.57302 7.59578 8.33296 8.55795 9.21758 10.83858 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.002240 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.704877 B =12499.005891 C =14799.058467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 H 0.052 0.948 4 C 0.118 3.882 5 N -0.743 5.743 6 C 0.533 3.467 7 O -0.513 6.513 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.679 5.679 19 C 0.140 3.860 20 C -0.007 4.007 21 C -0.070 4.070 22 O -0.200 6.200 23 C 0.219 3.781 24 C -0.071 4.071 25 C -0.163 4.163 26 C -0.159 4.159 27 N -0.459 5.459 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.391 0.609 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.344 0.656 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.215 0.785 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 8.247 25.507 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 H 0.070 0.930 4 C -0.006 4.006 5 N -0.398 5.398 6 C 0.319 3.681 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.206 1.206 18 N -0.314 5.314 19 C 0.011 3.989 20 C -0.127 4.127 21 C -0.141 4.141 22 O -0.087 6.087 23 C 0.013 3.987 24 C -0.090 4.090 25 C -0.200 4.200 26 C -0.197 4.197 27 N -0.188 5.188 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.225 0.775 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.232 0.768 41 H 0.164 0.836 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.779 7.024 23.871 29.464 hybrid contribution 3.688 1.417 1.338 4.172 sum -12.091 8.441 25.209 29.205 Atomic orbital electron populations 1.21731 0.93163 1.03108 1.01613 1.21797 0.97072 0.95989 0.88551 0.92967 1.21524 0.80325 1.01783 0.96979 1.46044 1.07191 1.62192 1.24411 1.20294 0.89480 0.76704 0.81626 1.90713 1.69863 1.45666 1.32442 1.23535 0.93518 1.05618 1.07783 1.85428 1.04614 1.73089 1.20106 1.22898 0.91499 1.44260 1.09691 0.90912 1.25000 0.99622 0.94551 0.94471 1.70027 1.35327 1.35443 1.09418 0.86111 0.82964 0.78013 0.78364 1.19653 1.20545 1.20553 1.60436 1.34142 1.33009 1.03788 1.20197 1.01623 0.91564 0.85516 1.21587 0.90211 1.01769 0.99155 1.24849 1.00500 0.99672 0.89118 1.84407 1.33086 1.52001 1.39184 1.25116 0.77393 0.98760 0.97475 1.20233 1.02150 1.00571 0.86053 1.23134 0.96763 0.98582 1.01556 1.23143 1.03223 0.99469 0.93849 1.70292 1.33849 1.11227 1.03413 0.91426 0.92306 0.92041 0.90519 0.90708 0.77476 0.89298 0.89261 0.92209 0.83542 0.88975 0.93235 0.76810 0.83631 0.87125 0.87776 0.88235 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.41 37.16 0.35 -0.77 16 2 C 0.08 0.66 2.81 -67.71 -0.19 0.47 16 3 H 0.05 0.40 7.80 -51.93 -0.40 0.00 16 4 C 0.12 1.37 5.31 -4.04 -0.02 1.34 16 5 N -0.74 -9.57 4.99 -60.30 -0.30 -9.87 16 6 C 0.53 9.82 7.85 -10.98 -0.09 9.73 16 7 O -0.51 -11.67 15.86 5.56 0.09 -11.58 16 8 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 14 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 N -0.68 -6.38 6.29 -107.99 -0.68 -7.06 16 19 C 0.14 1.16 6.02 -4.98 -0.03 1.13 16 20 C -0.01 -0.07 6.62 -82.81 -0.55 -0.62 16 21 C -0.07 -0.61 12.08 29.36 0.35 -0.26 16 22 O -0.20 -2.03 10.47 5.38 0.06 -1.97 16 23 C 0.22 2.25 7.83 -12.95 -0.10 2.15 16 24 C -0.07 -0.50 6.33 -91.77 -0.58 -1.08 16 25 C -0.16 -0.86 10.17 -26.69 -0.27 -1.14 16 26 C -0.16 -0.79 10.24 -26.70 -0.27 -1.07 16 27 N -0.46 -5.45 11.29 -7.36 -0.08 -5.53 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.39 3.87 7.37 -40.82 -0.30 3.57 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.34 3.34 6.70 -39.29 -0.26 3.07 16 38 H 0.09 0.79 7.44 -51.93 -0.39 0.40 16 39 H 0.05 0.31 8.06 -51.92 -0.42 -0.11 16 40 H 0.22 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.62 7.95 -51.93 -0.41 0.21 16 44 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -36.51 397.76 -9.17 -45.68 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.77 Total: 3.06 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.98 Total: -5.84 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.33 Total: -47.85 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.14 Total: -13.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.51 -9.17 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690554821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.301 kcal (2) G-P(sol) polarization free energy of solvation -36.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds