Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47100 * 2 1 4 4 C 1.53002 * 109.47025 * 239.99808 * 2 1 3 5 5 N 1.46501 * 109.46954 * 185.00124 * 4 2 1 6 6 C 1.34780 * 119.99970 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99835 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00164 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.47225 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00028 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99579 * 0.02562 * 10 9 8 12 12 C 1.38793 * 119.99951 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00149 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00048 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47210 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47110 * 120.00266 * 14 12 10 17 17 H 1.48493 * 109.47486 * 240.00327 * 14 12 10 18 18 N 1.46910 * 109.47111 * 120.00096 * 2 1 3 19 19 C 1.46895 * 110.99757 * 275.00003 * 18 2 1 20 20 C 1.50699 * 109.47024 * 180.02562 * 19 18 2 21 21 C 1.34338 * 126.16787 * 94.97287 * 20 19 18 22 22 O 1.34745 * 107.11116 * 180.02562 * 21 20 19 23 23 C 1.33969 * 107.76163 * 0.02562 * 22 21 20 24 24 C 1.50697 * 125.62232 * 180.02562 * 23 22 21 25 25 C 1.53002 * 117.49992 * 351.27830 * 24 23 22 26 26 C 1.53000 * 117.50034 * 59.93603 * 24 23 22 27 27 N 1.30252 * 108.75545 * 0.26392 * 23 22 21 28 28 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47045 * 299.99689 * 1 2 3 30 30 H 1.08995 * 109.47076 * 60.00061 * 1 2 3 31 31 H 1.08991 * 109.47005 * 304.99867 * 4 2 1 32 32 H 1.09000 * 109.46641 * 65.00221 * 4 2 1 33 33 H 0.96999 * 120.00428 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.47074 * 299.99987 * 8 6 5 35 35 H 1.09007 * 109.46773 * 59.99384 * 8 6 5 36 36 H 0.96997 * 120.00024 * 180.02562 * 13 12 10 37 37 H 1.00901 * 110.99618 * 151.04213 * 18 2 1 38 38 H 1.08995 * 109.47544 * 59.99869 * 19 18 2 39 39 H 1.09008 * 109.47210 * 299.99848 * 19 18 2 40 40 H 1.07999 * 126.44051 * 359.97438 * 21 20 19 41 41 H 1.09002 * 115.54932 * 205.60667 * 24 23 22 42 42 H 1.09000 * 117.49996 * 215.00670 * 25 24 23 43 43 H 1.08999 * 117.49664 * 0.02562 * 25 24 23 44 44 H 1.09008 * 117.49673 * 359.97438 * 26 24 23 45 45 H 1.08999 * 117.49942 * 144.97208 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4284 -2.1911 7 8 3.5700 -1.8834 -3.1399 8 6 5.6750 -1.5361 -2.1311 9 16 6.2783 -2.3895 -3.6088 10 6 8.0102 -2.3753 -3.2847 11 1 8.3864 -1.9221 -2.3794 12 6 8.8908 -2.9474 -4.1923 13 7 8.4321 -3.5001 -5.2954 14 14 10.7269 -2.9317 -3.8491 15 1 10.9823 -2.2550 -2.5522 16 1 11.2307 -4.3272 -3.7864 17 1 11.4274 -2.2010 -4.9355 18 7 2.0197 -0.6926 1.1995 19 6 2.0825 0.2225 2.3469 20 6 2.5885 -0.5216 3.5557 21 6 3.8624 -0.5732 3.9790 22 8 3.8814 -1.3404 5.0866 23 6 2.6269 -1.7458 5.3244 24 6 2.1904 -2.6246 6.4682 25 6 3.2847 -3.2646 7.3249 26 6 2.4456 -2.1149 7.8880 27 7 1.8474 -1.2594 4.4012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.9825 -0.4622 -0.4319 34 1 6.1093 -0.5374 -2.0850 35 1 5.9637 -2.0990 -1.2434 36 1 9.0475 -3.9002 -5.9295 37 1 2.9173 -1.1206 1.0287 38 1 1.0871 0.6163 2.5525 39 1 2.7589 1.0462 2.1182 40 1 4.7117 -0.0912 3.5177 41 1 1.2827 -3.2032 6.2967 42 1 3.0970 -4.2641 7.7169 43 1 4.3203 -3.0496 7.0614 44 1 2.9296 -1.1440 7.9948 45 1 1.7056 -2.3577 8.6505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690554821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -14.969850 kcal Electronic energy + Delta-G solvation = -25697.231328 eV Core-core repulsion = 21842.425272 eV Total energy + Delta-G solvation = -3854.806056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.36172 -40.79115 -38.67940 -38.09979 -36.19634 -34.91135 -34.58619 -32.84166 -31.02196 -30.31474 -27.75793 -27.12359 -26.08792 -25.22152 -23.37092 -22.50280 -21.85439 -21.69085 -21.20117 -19.87447 -18.42873 -17.94734 -17.71871 -17.45917 -17.03559 -16.89067 -16.83395 -16.37954 -16.09690 -15.86250 -15.67400 -14.93973 -14.84819 -14.58522 -14.44136 -14.17662 -13.75715 -13.36584 -13.32192 -13.16684 -13.12249 -12.92893 -12.90196 -12.60692 -12.56681 -12.48074 -12.42910 -11.96051 -11.71674 -11.64860 -11.55030 -11.48915 -11.16503 -11.00285 -10.27595 -10.19636 -9.72041 -9.44594 -8.67369 -8.35304 -6.13354 0.40347 1.25965 1.41104 1.46392 1.50962 1.57404 1.58494 1.74388 2.21538 2.27201 2.76818 2.91654 2.99010 3.17250 3.31628 3.65193 3.70765 3.75798 3.91279 3.94205 3.97268 4.11610 4.18294 4.28081 4.33190 4.46397 4.48819 4.57336 4.63110 4.71540 4.74946 4.82662 4.88804 4.93130 4.99360 5.01725 5.06523 5.16709 5.23042 5.30060 5.41631 5.43811 5.95518 6.19502 6.25851 6.40302 6.76491 7.06154 7.18864 8.74131 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.002240 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.704877 B =12499.005891 C =14799.058467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.714 5.714 6 C 0.535 3.465 7 O -0.564 6.564 8 C -0.129 4.129 9 S -0.153 6.153 10 C -0.544 4.544 11 H 0.084 0.916 12 C 0.011 3.989 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.256 1.256 16 H -0.275 1.275 17 H -0.274 1.274 18 N -0.692 5.692 19 C 0.145 3.855 20 C -0.028 4.028 21 C -0.068 4.068 22 O -0.210 6.210 23 C 0.210 3.790 24 C -0.094 4.094 25 C -0.156 4.156 26 C -0.146 4.146 27 N -0.495 5.495 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.342 0.658 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.249 0.751 41 H 0.150 0.850 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 9.745 27.989 32.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 H 0.093 0.907 4 C -0.004 4.004 5 N -0.369 5.369 6 C 0.321 3.679 7 O -0.442 6.442 8 C -0.280 4.280 9 S 0.074 5.926 10 C -0.692 4.692 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.200 1.200 18 N -0.327 5.327 19 C 0.016 3.984 20 C -0.148 4.148 21 C -0.139 4.139 22 O -0.097 6.097 23 C 0.003 3.997 24 C -0.113 4.113 25 C -0.193 4.193 26 C -0.183 4.183 27 N -0.225 5.225 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.248 0.752 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.265 0.735 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.760 8.562 26.414 31.446 hybrid contribution 3.247 0.991 0.662 3.459 sum -11.513 9.553 27.075 30.933 Atomic orbital electron populations 1.21723 0.92737 1.02417 1.02555 1.21714 0.97234 0.96397 0.86769 0.90749 1.21611 0.78903 1.01240 0.98695 1.45729 1.07866 1.60008 1.23299 1.20070 0.88935 0.76853 0.82052 1.90704 1.70472 1.48240 1.34747 1.23369 0.94540 1.05907 1.04228 1.85631 1.05950 1.75157 1.25840 1.23228 0.91556 1.44263 1.10128 0.89808 1.26146 1.05270 0.93851 0.94053 1.70193 1.37336 1.36581 1.10701 0.84894 0.75852 0.78263 0.78868 1.17915 1.20044 1.19951 1.60414 1.34144 1.33923 1.04259 1.20231 1.02070 0.91691 0.84394 1.21934 0.90774 1.02317 0.99769 1.25515 1.01168 0.98812 0.88361 1.84416 1.33158 1.52342 1.39797 1.25712 0.77340 0.98752 0.97888 1.20448 1.03130 1.01439 0.86287 1.23207 0.95852 0.99663 1.00575 1.23234 1.03201 0.99156 0.92754 1.70274 1.35079 1.12525 1.04599 0.92970 0.91516 0.90930 0.92387 0.90831 0.75196 0.86962 0.87202 0.92016 0.83826 0.89458 0.90439 0.73529 0.83228 0.85278 0.88633 0.88739 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.41 71.98 0.68 -1.32 16 2 C 0.09 1.34 2.81 44.91 0.13 1.47 16 3 H 0.07 0.86 7.80 -2.39 -0.02 0.84 16 4 C 0.12 2.61 5.31 86.38 0.46 3.06 16 5 N -0.71 -17.01 4.99 -463.06 -2.31 -19.32 16 6 C 0.54 19.29 7.85 87.66 0.69 19.98 16 7 O -0.56 -26.09 15.86 -3.03 -0.05 -26.14 16 8 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.54 -30.76 9.50 67.95 0.65 -30.11 16 11 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.65 5.49 84.86 0.47 1.11 16 13 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 14 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 N -0.69 -11.67 6.29 -495.56 -3.12 -14.79 16 19 C 0.14 2.08 6.02 85.56 0.52 2.60 16 20 C -0.03 -0.53 6.62 41.26 0.27 -0.26 16 21 C -0.07 -1.06 12.08 66.93 0.81 -0.25 16 22 O -0.21 -4.08 10.47 -3.68 -0.04 -4.12 16 23 C 0.21 4.25 7.83 88.34 0.69 4.94 16 24 C -0.09 -1.28 6.33 -11.54 -0.07 -1.35 16 25 C -0.16 -1.46 10.17 30.62 0.31 -1.14 16 26 C -0.15 -1.25 10.24 30.62 0.31 -0.94 16 27 N -0.50 -11.62 11.29 -291.98 -3.30 -14.92 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.90 7.45 -2.38 -0.02 0.88 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.41 6.80 7.37 -92.71 -0.68 6.12 16 34 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.34 5.87 6.70 -89.69 -0.60 5.27 16 38 H 0.09 1.34 7.44 -2.39 -0.02 1.32 16 39 H 0.08 0.68 8.06 -2.38 -0.02 0.66 16 40 H 0.25 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 1.07 7.95 -2.39 -0.02 1.05 16 44 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 45 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -82.45 397.76 -1.59 -84.03 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.27 Total: 21.95 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 6.34 Total: -6.76 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -8.44 Total: -104.69 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.09 Total: -30.25 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.45 -1.59 -84.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690554821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.065 kcal (2) G-P(sol) polarization free energy of solvation -82.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds