Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 N 1.46504 * 109.47066 * 184.99885 * 4 2 1 6 6 C 1.34771 * 120.00168 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99997 * 180.02562 * 6 5 4 9 9 S 1.81008 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00155 * 179.97438 * 9 8 6 11 11 H 1.08006 * 119.99878 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00190 * 179.97438 * 10 9 8 13 13 N 1.31638 * 119.99903 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00191 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46933 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46971 * 120.00377 * 14 12 10 17 17 H 1.48499 * 109.47488 * 240.00540 * 14 12 10 18 18 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 19 19 C 1.46901 * 110.99793 * 275.00325 * 18 2 1 20 20 C 1.50701 * 109.46921 * 179.97438 * 19 18 2 21 21 C 1.40191 * 120.36893 * 274.72284 * 20 19 18 22 22 C 1.35349 * 119.94630 * 179.73470 * 21 20 19 23 23 N 1.35761 * 120.70457 * 0.52095 * 22 21 20 24 24 C 1.46499 * 119.62520 * 179.73081 * 23 22 21 25 25 C 1.34657 * 120.75103 * 359.76013 * 23 22 21 26 26 O 1.22056 * 119.98935 * 179.97438 * 25 23 22 27 27 C 1.36401 * 120.36399 * 94.99948 * 20 19 18 28 28 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 29 29 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 31 31 H 1.09000 * 109.46986 * 305.00035 * 4 2 1 32 32 H 1.08994 * 109.46981 * 65.00265 * 4 2 1 33 33 H 0.97000 * 119.99510 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47328 * 299.99894 * 8 6 5 35 35 H 1.08997 * 109.47563 * 60.00601 * 8 6 5 36 36 H 0.96996 * 120.00141 * 179.97438 * 13 12 10 37 37 H 1.00899 * 110.99995 * 151.04723 * 18 2 1 38 38 H 1.09002 * 109.47401 * 59.99808 * 19 18 2 39 39 H 1.09001 * 109.46874 * 299.99821 * 19 18 2 40 40 H 1.08000 * 120.02619 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.64766 * 180.25752 * 22 21 20 42 42 H 1.09002 * 109.47155 * 270.02298 * 24 23 22 43 43 H 1.09002 * 109.47332 * 30.02293 * 24 23 22 44 44 H 1.09004 * 109.46897 * 150.02646 * 24 23 22 45 45 H 1.08000 * 120.35279 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4292 -2.1906 7 8 3.5699 -1.8851 -3.1389 8 6 5.6749 -1.5377 -2.1299 9 16 6.2783 -2.3909 -3.6078 10 6 8.0101 -2.3779 -3.2830 11 1 8.3863 -1.9254 -2.3773 12 6 8.8907 -2.9502 -4.1905 13 7 8.4321 -3.5021 -5.2941 14 14 10.7267 -2.9358 -3.8465 15 1 10.9819 -2.2597 -2.5491 16 1 11.2295 -4.3317 -3.7842 17 1 11.4281 -2.2049 -4.9323 18 7 2.0196 -0.6925 1.1995 19 6 2.0823 0.2227 2.3469 20 6 2.5872 -0.5217 3.5561 21 6 1.6996 -1.2458 4.3643 22 6 2.1631 -1.9156 5.4452 23 7 3.4821 -1.8871 5.7653 24 6 3.9572 -2.6160 6.9439 25 6 4.3586 -1.1961 5.0120 26 8 5.5414 -1.1796 5.3128 27 6 3.9120 -0.4938 3.8795 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6053 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9823 -0.4627 -0.4315 34 1 6.1098 -0.5393 -2.0841 35 1 5.9629 -2.1006 -1.2420 36 1 9.0475 -3.9017 -5.9284 37 1 2.9173 -1.1205 1.0288 38 1 1.0869 0.6164 2.5525 39 1 2.7587 1.0463 2.1182 40 1 0.6473 -1.2722 4.1224 41 1 1.4756 -2.4753 6.0622 42 1 3.9161 -1.9631 7.8158 43 1 3.3240 -3.4871 7.1121 44 1 4.9852 -2.9399 6.7808 45 1 4.6106 0.0617 3.2714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690555614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -36.224118 kcal Electronic energy + Delta-G solvation = -26004.792866 eV Core-core repulsion = 22149.065156 eV Total energy + Delta-G solvation = -3855.727710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62236 -39.48511 -38.00818 -37.08740 -35.56019 -33.59214 -32.41035 -31.46364 -30.19809 -29.36893 -28.25816 -26.20721 -25.50428 -25.09473 -23.95351 -21.69015 -20.95267 -20.43076 -18.05808 -17.82789 -17.70037 -16.80304 -16.43766 -16.32145 -16.16203 -16.05630 -15.27278 -14.85193 -14.78711 -14.74264 -14.39817 -14.01903 -13.62094 -13.46308 -13.38154 -13.07013 -12.93173 -12.86377 -12.65662 -12.61061 -12.25943 -12.05282 -11.97875 -11.92454 -11.70321 -11.20493 -11.05007 -11.00159 -10.73301 -10.28725 -10.23812 -9.79164 -9.43827 -9.06477 -8.95356 -8.90534 -8.30824 -8.22462 -6.48706 -6.20252 -3.90723 0.42316 1.52278 2.30269 3.00255 3.07046 3.22671 3.23643 3.29965 3.34933 3.67053 3.83630 4.10186 4.20386 4.22056 4.34829 4.45301 4.60475 4.79077 4.83920 4.86722 4.91967 4.99790 5.12168 5.15128 5.15482 5.16967 5.19908 5.43967 5.49448 5.53794 5.56748 5.64058 5.70365 5.82144 5.89289 5.96673 6.02192 6.13696 6.14474 6.50746 6.55569 6.70843 6.91282 7.59645 7.62409 7.72493 8.37392 8.57018 9.25480 10.87244 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.002528 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.094463 B =11073.715550 C =13621.712539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.053 0.947 4 C 0.118 3.882 5 N -0.743 5.743 6 C 0.534 3.466 7 O -0.514 6.514 8 C -0.155 4.155 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.679 5.679 19 C 0.089 3.911 20 C 0.019 3.981 21 C -0.208 4.208 22 C 0.126 3.874 23 N -0.501 5.501 24 C 0.058 3.942 25 C 0.513 3.487 26 O -0.552 6.552 27 C -0.237 4.237 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.348 0.652 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.267 7.375 24.474 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 H 0.071 0.929 4 C -0.006 4.006 5 N -0.399 5.399 6 C 0.320 3.680 7 O -0.388 6.388 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.314 5.314 19 C -0.040 4.040 20 C 0.015 3.985 21 C -0.231 4.231 22 C -0.001 4.001 23 N -0.212 5.212 24 C -0.083 4.083 25 C 0.315 3.685 26 O -0.434 6.434 27 C -0.260 4.260 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.073 6.258 23.093 31.231 hybrid contribution 2.772 1.184 1.489 3.362 sum -17.301 7.442 24.582 30.968 Atomic orbital electron populations 1.21730 0.93180 1.03013 1.01664 1.21819 0.96961 0.96169 0.88636 0.92875 1.21517 0.80456 1.01713 0.96954 1.46056 1.07143 1.62214 1.24498 1.20295 0.89498 0.76630 0.81573 1.90711 1.69870 1.45725 1.32465 1.23541 0.93475 1.05706 1.07801 1.85384 1.04687 1.73153 1.20089 1.22912 0.91478 1.44183 1.09676 0.90859 1.24996 0.99624 0.94533 0.94465 1.70030 1.35304 1.35586 1.09414 0.86113 0.82949 0.78010 0.78420 1.19572 1.20556 1.20571 1.60523 1.34403 1.32598 1.03844 1.21075 1.01627 0.93087 0.88180 1.20081 0.92850 0.91840 0.93775 1.20523 1.01283 1.04280 0.97023 1.21932 0.84382 0.96936 0.96840 1.45414 1.07797 1.42507 1.25492 1.22161 1.03160 0.96729 0.86268 1.17089 0.85964 0.80961 0.84501 1.90983 1.15494 1.64442 1.72525 1.22077 0.96488 1.07166 1.00266 0.92010 0.91423 0.92368 0.90530 0.90753 0.77342 0.89249 0.89153 0.92249 0.83151 0.89158 0.93443 0.83531 0.82050 0.90671 0.89660 0.88721 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.41 37.15 0.35 -0.53 16 2 C 0.07 0.56 2.81 -67.71 -0.19 0.37 16 3 H 0.05 0.38 7.80 -51.93 -0.40 -0.03 16 4 C 0.12 1.29 5.31 -4.04 -0.02 1.27 16 5 N -0.74 -9.56 4.99 -60.29 -0.30 -9.86 16 6 C 0.53 9.90 7.85 -10.99 -0.09 9.81 16 7 O -0.51 -11.64 15.86 5.55 0.09 -11.55 16 8 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 11 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 14 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 N -0.68 -5.20 6.29 -107.99 -0.68 -5.88 16 19 C 0.09 0.56 5.64 -4.97 -0.03 0.53 16 20 C 0.02 0.14 5.40 -104.55 -0.56 -0.43 16 21 C -0.21 -1.19 9.73 -39.88 -0.39 -1.58 16 22 C 0.13 0.64 10.28 -16.84 -0.17 0.47 16 23 N -0.50 -3.96 2.99 -127.20 -0.38 -4.34 16 24 C 0.06 0.31 10.36 59.85 0.62 0.93 16 25 C 0.51 6.00 7.41 -15.44 -0.11 5.89 16 26 O -0.55 -8.70 16.64 4.87 0.08 -8.62 16 27 C -0.24 -2.33 9.63 -39.37 -0.38 -2.71 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.31 7.45 -51.93 -0.39 -0.07 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.39 4.03 7.37 -40.82 -0.30 3.73 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.35 3.07 6.70 -39.29 -0.26 2.81 16 38 H 0.09 0.46 7.42 -51.93 -0.39 0.07 16 39 H 0.05 0.28 7.97 -51.93 -0.41 -0.13 16 40 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.16 0.20 8.04 -52.49 -0.42 -0.22 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.20 8.01 -51.93 -0.42 -0.22 16 44 H 0.09 0.69 7.39 -51.93 -0.38 0.31 16 45 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -38.58 393.78 -9.04 -47.62 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.73 Total: 1.51 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.56 Total: -2.02 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.63 Total: -45.78 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.58 -9.04 -47.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690555614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.398 kcal (2) G-P(sol) polarization free energy of solvation -38.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds