Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 5 5 N 1.46497 * 109.47185 * 175.00484 * 4 2 1 6 6 C 1.34786 * 119.99949 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99774 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.47006 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99967 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00502 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00459 * 180.02562 * 12 10 9 14 14 Si 1.86808 * 119.99615 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47063 * 90.00330 * 14 12 10 16 16 H 1.48500 * 109.46812 * 210.00035 * 14 12 10 17 17 H 1.48492 * 109.47174 * 330.00040 * 14 12 10 18 18 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 19 19 C 1.46901 * 110.99870 * 85.00132 * 18 2 1 20 20 C 1.50697 * 109.46943 * 180.02562 * 19 18 2 21 21 C 1.40203 * 120.36297 * 274.72057 * 20 19 18 22 22 C 1.35348 * 119.94149 * 179.73624 * 21 20 19 23 23 N 1.35756 * 120.70773 * 0.52540 * 22 21 20 24 24 C 1.46503 * 119.63043 * 179.73341 * 23 22 21 25 25 C 1.34657 * 120.75118 * 359.75540 * 23 22 21 26 26 O 1.22058 * 119.98902 * 179.97438 * 25 23 22 27 27 C 1.36397 * 120.37302 * 95.00093 * 20 19 18 28 28 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 30 30 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 31 31 H 1.09012 * 109.46941 * 294.99864 * 4 2 1 32 32 H 1.08996 * 109.47415 * 54.99347 * 4 2 1 33 33 H 0.96993 * 120.00253 * 359.97438 * 5 4 2 34 34 H 1.09007 * 109.47025 * 299.98958 * 8 6 5 35 35 H 1.08997 * 109.47386 * 59.99267 * 8 6 5 36 36 H 0.96998 * 120.00490 * 180.02562 * 13 12 10 37 37 H 1.00901 * 110.99869 * 321.04843 * 18 2 1 38 38 H 1.09004 * 109.47031 * 299.99620 * 19 18 2 39 39 H 1.08995 * 109.47111 * 59.99900 * 19 18 2 40 40 H 1.07996 * 120.02338 * 0.02562 * 21 20 19 41 41 H 1.08009 * 119.64297 * 180.25898 * 22 21 20 42 42 H 1.08993 * 109.47295 * 270.02511 * 24 23 22 43 43 H 1.09003 * 109.46820 * 30.01951 * 24 23 22 44 44 H 1.08994 * 109.47333 * 150.01726 * 24 23 22 45 45 H 1.08004 * 120.34524 * 359.97294 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8263 1.1905 6 6 4.1730 -1.4292 2.1907 7 8 3.5700 -1.8843 3.1393 8 6 5.6749 -1.5378 2.1301 9 16 6.2782 -2.3910 3.6079 10 6 8.0098 -2.3793 3.2825 11 1 8.3861 -1.9272 2.3766 12 6 8.8905 -2.9519 4.1898 13 7 10.1841 -2.9427 3.9469 14 14 8.2397 -3.7344 5.7563 15 1 7.9507 -5.1699 5.5094 16 1 9.2577 -3.6120 6.8305 17 1 6.9936 -3.0433 6.1741 18 7 2.0197 -0.6925 -1.1995 19 6 2.0825 0.2226 -2.3469 20 6 2.5874 -0.5218 -3.5560 21 6 3.9646 -0.6642 -3.7765 22 6 4.4086 -1.3391 -4.8625 23 7 3.5335 -1.8740 -5.7519 24 6 4.0401 -2.5948 -6.9224 25 6 2.2050 -1.7492 -5.5708 26 8 1.4307 -2.2352 -6.3796 27 6 1.7097 -1.0594 -4.4510 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.9824 -0.4627 0.4316 34 1 5.9629 -2.1007 1.2421 35 1 6.1098 -0.5394 2.0843 36 1 10.7995 -3.3432 4.5808 37 1 1.4495 -1.4979 -1.4101 38 1 1.0871 0.6163 -2.5526 39 1 2.7589 1.0462 -2.1182 40 1 4.6704 -0.2399 -3.0780 41 1 5.4706 -1.4496 -5.0254 42 1 4.1751 -1.8968 -7.7486 43 1 4.9961 -3.0579 -6.6782 44 1 3.3261 -3.3660 -7.2113 45 1 0.6451 -0.9566 -4.3004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690555615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -40.307625 kcal Electronic energy + Delta-G solvation = -25958.319438 eV Core-core repulsion = 22102.414654 eV Total energy + Delta-G solvation = -3855.904784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63983 -39.36142 -38.09529 -37.12012 -35.56055 -33.68237 -32.42143 -31.38017 -30.20840 -29.42525 -28.16105 -26.11964 -25.59201 -25.25401 -23.95972 -21.74776 -21.32801 -20.25596 -17.95318 -17.84398 -17.69823 -16.73477 -16.46795 -16.26988 -16.10433 -16.03683 -15.22239 -14.95946 -14.82368 -14.75310 -14.35763 -13.87383 -13.73324 -13.63763 -13.37161 -13.18598 -12.98662 -12.91005 -12.77277 -12.60049 -12.55265 -12.07857 -12.03074 -11.99815 -11.69143 -11.29744 -11.23804 -10.99226 -10.57153 -10.31338 -10.27588 -9.83863 -9.44371 -8.99024 -8.92593 -8.79796 -8.46208 -8.32382 -6.88541 -6.27507 -3.98343 0.40986 1.51697 2.29554 2.82934 3.08788 3.19806 3.33893 3.39047 3.52402 3.69373 3.82917 4.13859 4.21195 4.34895 4.35358 4.46900 4.60235 4.67450 4.79457 4.81023 4.85858 4.87562 4.92451 5.09952 5.11763 5.14742 5.18553 5.26931 5.32189 5.46179 5.52865 5.59813 5.68449 5.69843 5.81448 5.84507 6.00999 6.07343 6.12884 6.46670 6.66531 6.69755 6.90534 7.68578 7.80103 7.95755 8.43026 8.62382 9.19116 10.81752 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.002321 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.468615 B =12062.296940 C =14005.358908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 H 0.087 0.913 4 C 0.134 3.866 5 N -0.722 5.722 6 C 0.528 3.472 7 O -0.527 6.527 8 C -0.121 4.121 9 S -0.144 6.144 10 C -0.520 4.520 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.882 5.882 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.235 1.235 18 N -0.676 5.676 19 C 0.089 3.911 20 C 0.023 3.977 21 C -0.208 4.208 22 C 0.129 3.871 23 N -0.500 5.500 24 C 0.058 3.942 25 C 0.513 3.487 26 O -0.559 6.559 27 C -0.243 4.243 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.270 0.730 37 H 0.349 0.651 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 8.636 -19.885 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.038 4.038 3 H 0.106 0.894 4 C 0.009 3.991 5 N -0.376 5.376 6 C 0.314 3.686 7 O -0.402 6.402 8 C -0.272 4.272 9 S 0.082 5.918 10 C -0.667 4.667 11 H 0.106 0.894 12 C -0.114 4.114 13 N -0.519 5.519 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.307 5.307 19 C -0.039 4.039 20 C 0.019 3.981 21 C -0.231 4.231 22 C 0.002 3.998 23 N -0.211 5.211 24 C -0.084 4.084 25 C 0.316 3.684 26 O -0.442 6.442 27 C -0.265 4.265 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.168 0.832 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.168 0.832 41 H 0.182 0.818 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.386 7.581 -18.638 25.949 hybrid contribution 0.137 0.386 -1.018 1.097 sum -16.249 7.967 -19.656 26.719 Atomic orbital electron populations 1.22425 0.95967 1.02893 1.02796 1.21862 0.93483 0.98430 0.90020 0.89444 1.21240 0.81219 1.00649 0.95979 1.45727 1.06782 1.61152 1.23970 1.20250 0.89367 0.77061 0.81925 1.90689 1.69908 1.46608 1.33004 1.23252 0.93676 1.05267 1.05021 1.84793 1.06795 1.75571 1.24622 1.22324 0.88756 1.44486 1.11146 0.89422 1.24714 0.94103 0.94562 0.97971 1.69936 1.01564 1.43614 1.36749 0.86735 0.80788 0.81235 0.83101 1.19240 1.20009 1.15902 1.60538 1.58129 1.09379 1.02691 1.21051 1.00265 0.94823 0.87776 1.20095 0.93357 0.91248 0.93412 1.20595 0.95693 1.07125 0.99720 1.22007 0.96003 0.92516 0.89281 1.45410 1.07856 1.45524 1.22273 1.22170 1.01108 0.98099 0.86977 1.17072 0.80721 0.82658 0.87996 1.90958 1.54693 1.51520 1.47072 1.21992 1.01195 1.06468 0.96868 0.91837 0.91306 0.92235 0.91319 0.91755 0.76132 0.88586 0.88668 0.91985 0.83220 0.93516 0.89113 0.83234 0.81810 0.90629 0.89493 0.88826 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 9.16 37.16 0.34 -0.65 16 2 C 0.07 0.47 2.75 -67.71 -0.19 0.28 16 3 H 0.09 0.51 7.80 -51.93 -0.40 0.11 16 4 C 0.13 1.36 5.37 -4.05 -0.02 1.34 16 5 N -0.72 -8.84 5.39 -60.30 -0.32 -9.17 16 6 C 0.53 9.28 7.85 -10.98 -0.09 9.19 16 7 O -0.53 -11.38 15.86 5.56 0.09 -11.29 16 8 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 10 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 11 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 12 C 0.09 2.77 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -26.49 13.97 55.49 0.78 -25.72 16 14 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 18 N -0.68 -4.33 5.68 -107.99 -0.61 -4.94 16 19 C 0.09 0.48 5.64 -4.98 -0.03 0.45 16 20 C 0.02 0.16 5.40 -104.55 -0.56 -0.41 16 21 C -0.21 -1.26 9.73 -39.87 -0.39 -1.65 16 22 C 0.13 0.72 10.28 -16.85 -0.17 0.55 16 23 N -0.50 -3.90 2.99 -127.20 -0.38 -4.28 16 24 C 0.06 0.31 10.36 59.85 0.62 0.93 16 25 C 0.51 5.61 7.41 -15.45 -0.11 5.49 16 26 O -0.56 -8.18 16.64 4.87 0.08 -8.10 16 27 C -0.24 -2.13 9.63 -39.38 -0.38 -2.51 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.28 7.45 -51.93 -0.39 -0.10 16 31 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.03 8.14 -40.82 -0.33 3.70 16 34 H 0.10 1.72 8.14 -51.91 -0.42 1.29 16 35 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.35 2.38 8.46 -39.29 -0.33 2.05 16 38 H 0.05 0.23 7.35 -51.93 -0.38 -0.16 16 39 H 0.09 0.42 8.04 -51.93 -0.42 0.00 16 40 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.16 0.39 8.04 -52.48 -0.42 -0.03 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.24 8.01 -51.93 -0.42 -0.18 16 44 H 0.09 0.65 7.39 -51.93 -0.38 0.26 16 45 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 393.14 15.07 5.92 5.92 Total: -1.00 -37.75 393.14 -8.56 -46.31 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.86 Total: 0.82 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.54 Total: -0.98 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.54 Total: -44.10 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.17 Total: -19.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.75 -8.56 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690555615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.999 kcal (2) G-P(sol) polarization free energy of solvation -37.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds