Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46629 * 2 1 4 4 C 1.52991 * 109.47155 * 240.00260 * 2 1 3 5 5 N 1.46501 * 109.47211 * 184.99521 * 4 2 1 6 6 C 1.34773 * 120.00112 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00273 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00202 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47174 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46793 * 179.97438 * 9 8 6 11 11 C 1.38424 * 122.54128 * 270.00062 * 10 9 8 12 12 C 1.33385 * 114.92103 * 180.02562 * 11 10 9 13 13 S 1.75884 * 109.59663 * 359.97438 * 12 11 10 14 14 C 1.33394 * 122.53830 * 90.02921 * 10 9 8 15 15 N 1.46893 * 109.47283 * 119.99765 * 2 1 3 16 16 C 1.46901 * 111.00588 * 275.00326 * 15 2 1 17 17 C 1.50695 * 109.47380 * 179.97438 * 16 15 2 18 18 O 1.21290 * 120.00052 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99996 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99780 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00531 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99689 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99898 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99812 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46917 * 119.99770 * 24 22 20 27 27 H 1.48501 * 109.47086 * 239.99683 * 24 22 20 28 28 H 1.09005 * 109.46629 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47210 * 299.99463 * 1 2 3 30 30 H 1.08993 * 109.47336 * 59.99969 * 1 2 3 31 31 H 1.09007 * 109.47041 * 64.99720 * 4 2 1 32 32 H 1.08996 * 109.47250 * 304.99705 * 4 2 1 33 33 H 0.96999 * 119.99657 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46843 * 59.99795 * 8 6 5 35 35 H 1.08996 * 109.47042 * 300.00170 * 8 6 5 36 36 H 1.08998 * 109.47362 * 60.00163 * 9 8 6 37 37 H 1.09001 * 109.47324 * 299.99569 * 9 8 6 38 38 H 1.07999 * 122.53445 * 0.04604 * 11 10 9 39 39 H 1.08001 * 125.20152 * 180.02562 * 12 11 10 40 40 H 1.07995 * 125.20296 * 359.70761 * 14 10 9 41 41 H 1.00897 * 111.00051 * 38.95921 * 15 2 1 42 42 H 1.09003 * 109.47097 * 299.99987 * 16 15 2 43 43 H 1.09003 * 109.46925 * 59.99845 * 16 15 2 44 44 H 0.96996 * 120.00172 * 0.02562 * 19 17 16 45 45 H 0.97001 * 119.99862 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.1731 -1.4280 -2.1912 7 8 3.5701 -1.8830 -3.1400 8 6 5.6750 -1.5366 -2.1307 9 6 6.1850 -2.2576 -3.3800 10 6 7.6869 -2.3656 -3.3197 11 6 8.5248 -1.3952 -3.8417 12 6 9.8279 -1.6454 -3.7056 13 16 10.0504 -3.1809 -2.8772 14 6 8.3097 -3.4039 -2.7597 15 7 2.0197 -0.6924 1.1994 16 6 2.0825 0.2226 2.3469 17 6 2.5874 -0.5218 3.5560 18 8 2.8678 -1.6987 3.4701 19 7 2.7283 0.1205 4.7325 20 6 3.1881 -0.5567 5.8323 21 1 3.4378 -1.6046 5.7559 22 6 3.3329 0.1054 7.0454 23 7 3.0295 1.3806 7.1383 24 14 3.9587 -0.8174 8.5442 25 1 4.2276 -2.2313 8.1784 26 1 5.2124 -0.1846 9.0271 27 1 2.9344 -0.7696 9.6183 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1581 -2.1369 32 1 1.6054 -1.7197 -1.2951 33 1 3.9823 -0.4626 -0.4316 34 1 5.9630 -2.1002 -1.2433 35 1 6.1098 -0.5382 -2.0840 36 1 5.8970 -1.6944 -4.2677 37 1 5.7502 -3.2561 -3.4262 38 1 8.1515 -0.5030 -4.3223 39 1 10.6245 -1.0028 -4.0505 40 1 7.8200 -4.2495 -2.3000 41 1 1.4497 -1.4979 1.4100 42 1 2.7589 1.0463 2.1183 43 1 1.0870 0.6163 2.5526 44 1 2.5044 1.0617 4.8011 45 1 3.1309 1.8428 7.9850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690584056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -53.346277 kcal Electronic energy + Delta-G solvation = -25775.630091 eV Core-core repulsion = 21919.159908 eV Total energy + Delta-G solvation = -3856.470183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83317 -38.60779 -38.31466 -36.93160 -34.15063 -33.73086 -32.99044 -31.33854 -30.74080 -29.39459 -26.88593 -26.33847 -24.87967 -23.92376 -22.61163 -21.02737 -20.11594 -19.33711 -18.91733 -17.95847 -17.85798 -16.98368 -16.37441 -16.00816 -15.66410 -15.42413 -15.18360 -14.81853 -14.59062 -14.08990 -13.93721 -13.61035 -13.41195 -13.33674 -13.17440 -13.04474 -12.74440 -12.63463 -12.28581 -12.22256 -12.15738 -11.98772 -11.70133 -11.61658 -11.43868 -11.16957 -11.09797 -11.00689 -10.91816 -10.37595 -10.26493 -9.83712 -9.56256 -9.02763 -8.94821 -8.59316 -8.54354 -8.15488 -8.00731 -6.46142 -3.86990 0.78505 1.44826 1.77172 2.44488 2.71292 3.13276 3.24368 3.30374 3.31626 3.85425 4.02492 4.26315 4.60634 4.71018 4.76151 4.91970 4.92954 4.96519 5.08003 5.09826 5.17725 5.23578 5.30978 5.32779 5.47130 5.50382 5.60789 5.62331 5.67288 5.73741 5.82880 5.85738 5.94691 5.96847 6.02016 6.21376 6.21943 6.30072 6.53114 7.10319 7.51401 7.54991 7.63972 8.01938 8.31033 8.56298 9.13700 9.49563 10.00600 10.71564 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008547 B = 0.002234 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3275.090163 B =12531.278400 C =15262.478516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.134 3.866 5 N -0.712 5.712 6 C 0.512 3.488 7 O -0.555 6.555 8 C -0.135 4.135 9 C -0.043 4.043 10 C -0.101 4.101 11 C -0.129 4.129 12 C -0.214 4.214 13 S 0.087 5.913 14 C -0.207 4.207 15 N -0.664 5.664 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.353 0.647 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -0.481 -20.677 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.009 3.991 5 N -0.364 5.364 6 C 0.298 3.702 7 O -0.434 6.434 8 C -0.176 4.176 9 C -0.083 4.083 10 C -0.114 4.114 11 C -0.160 4.160 12 C -0.349 4.349 13 S 0.351 5.649 14 C -0.343 4.343 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.183 0.817 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.883 -2.245 -20.924 22.472 hybrid contribution -1.766 1.421 1.179 2.555 sum 6.117 -0.824 -19.745 20.687 Atomic orbital electron populations 1.22438 0.96297 1.02721 1.02592 1.21855 0.93357 0.98308 0.90793 0.89827 1.21305 0.80455 1.00817 0.96506 1.45844 1.07681 1.59337 1.23506 1.20640 0.90026 0.77384 0.82147 1.90676 1.70596 1.48276 1.33806 1.21638 0.92011 1.03316 1.00601 1.20028 0.88492 1.02177 0.97592 1.18994 0.97128 0.94494 1.00741 1.20130 0.92238 1.00791 1.02808 1.25599 1.00384 1.01162 1.07743 1.84327 1.05657 1.17955 1.56973 1.25547 0.96057 1.04230 1.08437 1.60177 1.57711 1.09191 1.02541 1.21719 1.00048 0.95630 0.90905 1.19804 0.85277 0.88252 0.84200 1.90535 1.55301 1.16240 1.84610 1.41877 1.57702 1.12449 1.07978 1.19746 1.39907 0.96458 0.86729 0.87874 1.25267 0.97625 0.95778 0.99275 1.69616 1.48666 1.08859 1.27132 0.85807 0.78266 0.79660 0.80671 1.19197 1.20714 1.20759 0.91984 0.91947 0.91866 0.91509 0.91644 0.75408 0.88489 0.88861 0.90193 0.90194 0.84204 0.81957 0.81747 0.82660 0.89642 0.93720 0.77487 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.16 37.16 0.34 -1.37 16 2 C 0.07 0.72 2.75 -67.72 -0.19 0.54 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.50 5.37 -4.05 -0.02 1.48 16 5 N -0.71 -8.29 5.39 -60.30 -0.32 -8.62 16 6 C 0.51 6.36 7.83 -10.99 -0.09 6.27 16 7 O -0.55 -8.66 15.98 5.56 0.09 -8.58 16 8 C -0.14 -1.31 5.68 -27.88 -0.16 -1.47 16 9 C -0.04 -0.41 4.76 -27.88 -0.13 -0.54 16 10 C -0.10 -0.95 5.06 -106.24 -0.54 -1.48 16 11 C -0.13 -1.10 9.98 -41.21 -0.41 -1.51 16 12 C -0.21 -1.71 11.23 29.04 0.33 -1.39 16 13 S 0.09 0.74 23.34 -107.50 -2.51 -1.77 16 14 C -0.21 -1.91 10.98 29.04 0.32 -1.59 16 15 N -0.66 -9.40 5.31 -108.00 -0.57 -9.98 16 16 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 17 C 0.44 9.83 7.82 -10.99 -0.09 9.74 16 18 O -0.58 -15.18 15.78 5.55 0.09 -15.09 16 19 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 24 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.41 4.63 8.14 -40.82 -0.33 4.30 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 42 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 43 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 44 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -32.18 396.36 -9.25 -41.43 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -6.73 Total: 16.48 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.90 Total: 1.63 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.23 Total: -55.76 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.18 Total: -23.67 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.18 -9.25 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690584056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.918 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds