Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47180 * 2 1 4 4 C 1.52999 * 109.47665 * 120.00121 * 2 1 3 5 5 N 1.46501 * 109.47082 * 175.00070 * 4 2 1 6 6 C 1.34783 * 119.99536 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99432 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46526 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46909 * 180.02562 * 9 8 6 11 11 C 1.38423 * 122.53613 * 270.00211 * 10 9 8 12 12 C 1.33390 * 114.91977 * 180.02562 * 11 10 9 13 13 S 1.75887 * 109.59565 * 359.75483 * 12 11 10 14 14 C 1.33391 * 122.54338 * 90.02238 * 10 9 8 15 15 N 1.46911 * 109.47318 * 240.00510 * 2 1 3 16 16 C 1.46899 * 111.00117 * 84.99320 * 15 2 1 17 17 C 1.50692 * 109.46969 * 180.02562 * 16 15 2 18 18 O 1.21294 * 120.00086 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99933 * 179.97438 * 17 16 15 20 20 C 1.37091 * 119.99847 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00259 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99939 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00166 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00156 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46937 * 60.00273 * 24 22 20 26 26 H 1.48505 * 109.47273 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47183 * 300.00032 * 24 22 20 28 28 H 1.08996 * 109.47055 * 299.99480 * 1 2 3 29 29 H 1.08998 * 109.47496 * 60.00037 * 1 2 3 30 30 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46674 * 55.00052 * 4 2 1 32 32 H 1.08994 * 109.46989 * 295.00179 * 4 2 1 33 33 H 0.96995 * 120.00320 * 0.02562 * 5 4 2 34 34 H 1.08994 * 109.46984 * 60.00404 * 8 6 5 35 35 H 1.08994 * 109.47395 * 299.99944 * 8 6 5 36 36 H 1.08994 * 109.47301 * 60.00425 * 9 8 6 37 37 H 1.09003 * 109.46866 * 299.99861 * 9 8 6 38 38 H 1.08001 * 122.53963 * 0.04211 * 11 10 9 39 39 H 1.07998 * 125.20164 * 180.02562 * 12 11 10 40 40 H 1.08002 * 125.19887 * 359.95301 * 14 10 9 41 41 H 1.00899 * 110.99287 * 321.04423 * 15 2 1 42 42 H 1.09003 * 109.47138 * 300.00727 * 16 15 2 43 43 H 1.08997 * 109.46721 * 60.00205 * 16 15 2 44 44 H 0.96997 * 120.00156 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00237 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1732 -1.4282 2.1910 7 8 3.5702 -1.8832 3.1397 8 6 5.6751 -1.5368 2.1302 9 6 6.1852 -2.2579 3.3796 10 6 7.6871 -2.3660 3.3192 11 6 8.3332 -3.4431 2.7374 12 6 9.6654 -3.3830 2.7685 13 16 10.1705 -1.8967 3.5618 14 6 8.4946 -1.4311 3.8225 15 7 2.0197 -0.6924 -1.1996 16 6 2.0823 0.2227 -2.3470 17 6 2.5872 -0.5216 -3.5561 18 8 2.8669 -1.6988 -3.4705 19 7 2.7271 0.1205 -4.7328 20 6 3.1869 -0.5566 -5.8327 21 1 3.4367 -1.6045 -5.7563 22 6 3.3316 0.1055 -7.0457 23 7 3.0282 1.3807 -7.1386 24 14 3.9588 -0.8168 -8.5442 25 1 3.0379 -1.9393 -8.8558 26 1 4.0214 0.1081 -9.7044 27 1 5.3152 -1.3524 -8.2639 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6055 -1.7198 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 3.9824 -0.4620 0.4318 34 1 6.1099 -0.5384 2.0836 35 1 5.9631 -2.1003 1.2428 36 1 5.7503 -3.2563 3.4257 37 1 5.8972 -1.6947 4.2672 38 1 7.7992 -4.2694 2.2919 39 1 10.3319 -4.1305 2.3642 40 1 8.1689 -0.5248 4.3113 41 1 1.4495 -1.4978 -1.4101 42 1 1.0869 0.6164 -2.5525 43 1 2.7587 1.0463 -2.1183 44 1 2.5031 1.0617 -4.8014 45 1 3.1288 1.8428 -7.9855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690584057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -53.231111 kcal Electronic energy + Delta-G solvation = -25779.383048 eV Core-core repulsion = 21922.917859 eV Total energy + Delta-G solvation = -3856.465189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83384 -38.60581 -38.31263 -36.92950 -34.14961 -33.72942 -32.98999 -31.33721 -30.74021 -29.39617 -26.88701 -26.33633 -24.87887 -23.92071 -22.60341 -21.02698 -20.11678 -19.33411 -18.91795 -17.95787 -17.86161 -16.98271 -16.36203 -16.03702 -15.67881 -15.36335 -15.17568 -14.85868 -14.58772 -14.05295 -13.97444 -13.60311 -13.42153 -13.32320 -13.17119 -13.03721 -12.79159 -12.60682 -12.26909 -12.21952 -12.15797 -11.99356 -11.70042 -11.61113 -11.43778 -11.16638 -11.05982 -11.00738 -10.92820 -10.47412 -10.25198 -9.83833 -9.54074 -9.02820 -8.94851 -8.59480 -8.54195 -8.15339 -8.00562 -6.45725 -3.86751 0.78109 1.44356 1.76210 2.45469 2.71160 3.17172 3.23347 3.27440 3.30607 3.85670 4.02617 4.26299 4.61661 4.69537 4.76162 4.91409 4.92234 4.97917 5.08656 5.09208 5.17881 5.23737 5.31827 5.33942 5.45726 5.49467 5.61745 5.62935 5.67580 5.73690 5.84511 5.86034 5.94675 5.97001 6.02098 6.21317 6.21556 6.30712 6.53093 7.10388 7.51146 7.55129 7.63902 8.01629 8.30947 8.56586 9.13682 9.49656 10.00851 10.71813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.002211 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.832266 B =12659.905951 C =15308.730877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.712 5.712 6 C 0.512 3.488 7 O -0.555 6.555 8 C -0.135 4.135 9 C -0.043 4.043 10 C -0.098 4.098 11 C -0.129 4.129 12 C -0.210 4.210 13 S 0.083 5.917 14 C -0.211 4.211 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 -0.719 20.487 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.009 3.991 5 N -0.364 5.364 6 C 0.298 3.702 7 O -0.433 6.433 8 C -0.176 4.176 9 C -0.083 4.083 10 C -0.111 4.111 11 C -0.159 4.159 12 C -0.346 4.346 13 S 0.347 5.653 14 C -0.346 4.346 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.181 0.819 40 H 0.181 0.819 41 H 0.173 0.827 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.984 -0.968 21.529 22.982 hybrid contribution -1.897 -0.070 -1.952 2.723 sum 6.087 -1.038 19.576 20.527 Atomic orbital electron populations 1.22434 0.96296 1.02724 1.02590 1.21858 0.93357 0.98305 0.90799 0.89834 1.21305 0.80453 1.00821 0.96501 1.45844 1.07679 1.59319 1.23525 1.20639 0.90020 0.77389 0.82145 1.90676 1.70588 1.48281 1.33803 1.21637 0.92022 1.03192 1.00712 1.20034 0.88506 1.02255 0.97536 1.19002 0.97030 0.94565 1.00472 1.20180 0.93552 1.00029 1.02174 1.25612 0.99076 1.01918 1.07961 1.84280 1.07673 1.16456 1.56911 1.25490 0.95196 1.04618 1.09337 1.60187 1.57698 1.09187 1.02534 1.21716 1.00041 0.95628 0.90909 1.19802 0.85310 0.88261 0.84195 1.90534 1.55350 1.16216 1.84620 1.41861 1.57689 1.12453 1.07934 1.19646 1.40138 0.96425 0.86775 0.87982 1.25261 0.97585 0.95769 0.99260 1.69599 1.48546 1.08845 1.27305 0.85924 0.79485 0.78836 0.80022 1.19911 1.20963 1.19845 0.91870 0.91946 0.91980 0.91633 0.91520 0.75408 0.88925 0.88410 0.90041 0.90314 0.84015 0.81875 0.81901 0.82661 0.93724 0.89652 0.77480 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.16 37.15 0.34 -1.37 16 2 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.50 5.37 -4.04 -0.02 1.48 16 5 N -0.71 -8.29 5.39 -60.29 -0.32 -8.62 16 6 C 0.51 6.35 7.83 -10.98 -0.09 6.27 16 7 O -0.55 -8.66 15.98 5.56 0.09 -8.57 16 8 C -0.14 -1.31 5.68 -27.88 -0.16 -1.47 16 9 C -0.04 -0.41 4.76 -27.88 -0.13 -0.55 16 10 C -0.10 -0.92 5.06 -106.25 -0.54 -1.45 16 11 C -0.13 -1.18 9.98 -41.21 -0.41 -1.59 16 12 C -0.21 -1.77 11.23 29.04 0.33 -1.45 16 13 S 0.08 0.69 23.34 -107.50 -2.51 -1.82 16 14 C -0.21 -1.83 10.98 29.04 0.32 -1.51 16 15 N -0.66 -9.40 5.32 -107.99 -0.57 -9.97 16 16 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 17 C 0.44 9.82 7.82 -10.99 -0.09 9.73 16 18 O -0.58 -15.18 15.78 5.54 0.09 -15.09 16 19 N -0.56 -13.76 5.29 -10.97 -0.06 -13.82 16 20 C -0.30 -8.19 9.68 -14.94 -0.14 -8.33 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 24 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 4.63 8.14 -40.82 -0.33 4.30 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 42 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 43 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 44 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -32.11 396.36 -9.25 -41.35 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -6.73 Total: 16.63 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.90 Total: 1.58 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.23 Total: -55.74 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.18 Total: -23.66 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.11 -9.25 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690584057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.878 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds