Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 10 10 C 1.53002 * 109.47419 * 300.00197 * 8 6 5 11 11 C 1.50703 * 109.47064 * 180.02562 * 8 6 5 12 12 C 1.33388 * 125.20382 * 239.71674 * 11 8 6 13 13 C 1.38417 * 114.92210 * 179.86002 * 12 11 8 14 14 C 1.33389 * 114.92032 * 0.43225 * 13 12 11 15 15 S 1.75877 * 109.59412 * 359.77195 * 14 13 12 16 16 N 1.46905 * 109.47161 * 119.99449 * 2 1 3 17 17 C 1.46896 * 111.00168 * 275.00642 * 16 2 1 18 18 C 1.50702 * 109.47115 * 179.97438 * 17 16 2 19 19 O 1.21292 * 120.00118 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00164 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99583 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00447 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00477 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99664 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47013 * 90.00682 * 25 23 21 27 27 H 1.48504 * 109.46892 * 210.00109 * 25 23 21 28 28 H 1.48498 * 109.47317 * 330.00353 * 25 23 21 29 29 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 30 30 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 31 31 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 35 35 H 1.08992 * 109.47063 * 300.00072 * 10 8 6 36 36 H 1.09004 * 109.46733 * 60.00358 * 10 8 6 37 37 H 1.08996 * 109.47407 * 179.97438 * 10 8 6 38 38 H 1.08005 * 122.53718 * 0.02562 * 12 11 8 39 39 H 1.08002 * 122.54419 * 180.20201 * 13 12 11 40 40 H 1.08008 * 125.20252 * 179.78963 * 14 13 12 41 41 H 1.00907 * 110.99364 * 38.95732 * 16 2 1 42 42 H 1.09007 * 109.46974 * 299.99418 * 17 16 2 43 43 H 1.08997 * 109.47662 * 59.99422 * 17 16 2 44 44 H 0.97003 * 119.99961 * 359.97438 * 20 18 17 45 45 H 0.96996 * 120.00366 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 1 5.9637 -2.0990 -1.2423 10 6 6.2847 -0.1349 -2.0670 11 6 6.1774 -2.2473 -3.3607 12 6 6.8730 -3.3855 -3.3612 13 6 7.2249 -3.8534 -4.6155 14 6 6.8228 -3.0906 -5.6332 15 16 5.9429 -1.6987 -5.0153 16 7 2.0197 -0.6924 1.1995 17 6 2.0823 0.2227 2.3469 18 6 2.5872 -0.5216 3.5561 19 8 2.8668 -1.6988 3.4706 20 7 2.7280 0.1207 4.7326 21 6 3.1878 -0.5563 5.8325 22 1 3.4368 -1.6045 5.7563 23 6 3.3325 0.1057 7.0455 24 7 3.7727 -0.5433 8.0999 25 14 2.9012 1.9185 7.1774 26 1 1.4717 2.0611 7.5537 27 1 3.7519 2.5556 8.2146 28 1 3.1369 2.5800 5.8689 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.9824 -0.4627 -0.4314 35 1 5.9960 0.4273 -2.9549 36 1 5.9214 0.3794 -1.1772 37 1 7.3710 -0.2127 -2.0230 38 1 7.1391 -3.9041 -2.4520 39 1 7.7858 -4.7651 -4.7592 40 1 7.0088 -3.2963 -6.6770 41 1 1.4495 -1.4979 1.4101 42 1 2.7588 1.0463 2.1183 43 1 1.0870 0.6165 2.5525 44 1 2.5047 1.0622 4.8009 45 1 3.8741 -0.0810 8.9466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690621676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -38.804980 kcal Electronic energy + Delta-G solvation = -26404.912045 eV Core-core repulsion = 22549.072420 eV Total energy + Delta-G solvation = -3855.839625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03652 -38.69341 -37.86955 -37.00925 -34.31546 -34.08414 -33.66389 -31.74025 -30.85136 -28.75730 -26.76168 -26.39333 -24.82638 -23.81645 -23.02465 -21.12549 -20.23240 -19.49528 -19.46267 -18.46536 -17.63669 -16.69302 -16.29949 -16.03310 -15.65035 -15.54910 -15.16460 -14.90034 -14.69987 -14.27141 -13.81780 -13.69796 -13.32715 -13.15685 -13.10760 -12.86391 -12.78024 -12.63720 -12.45364 -12.41423 -12.25033 -12.19391 -11.92832 -11.77453 -11.65851 -11.56377 -11.21980 -11.09318 -10.74666 -10.64649 -10.02573 -9.84938 -9.62752 -9.02057 -8.77499 -8.68245 -8.44192 -8.28760 -8.22264 -6.35941 -3.87754 0.89314 1.57197 1.96181 2.59158 2.65085 2.97500 3.02011 3.10967 3.22122 3.67326 3.96831 4.05590 4.33654 4.61857 4.66249 4.77663 4.82923 4.92192 4.93912 5.07595 5.10640 5.16732 5.34480 5.39644 5.42495 5.47590 5.48582 5.54566 5.55853 5.64067 5.73356 5.81102 5.83934 5.86932 5.96096 5.99192 6.17767 6.36518 6.44422 6.96256 7.44202 7.52508 7.55264 8.09094 8.22373 8.54040 8.89817 9.36957 9.76538 10.77065 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002206 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.161068 B =12686.950195 C =13670.881056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.709 5.709 6 C 0.514 3.486 7 O -0.537 6.537 8 C -0.043 4.043 9 H 0.117 0.883 10 C -0.143 4.143 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.134 4.134 14 C -0.227 4.227 15 S 0.132 5.868 16 N -0.664 5.664 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.160 0.840 41 H 0.355 0.645 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 4.291 -23.946 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.361 5.361 6 C 0.299 3.701 7 O -0.414 6.414 8 C -0.067 4.067 9 H 0.135 0.865 10 C -0.201 4.201 11 C -0.270 4.270 12 C -0.171 4.171 13 C -0.165 4.165 14 C -0.363 4.363 15 S 0.397 5.603 16 N -0.297 5.297 17 C -0.086 4.086 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.176 0.824 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.577 4.482 -25.285 25.728 hybrid contribution -0.369 0.391 1.652 1.738 sum 1.208 4.873 -23.633 24.160 Atomic orbital electron populations 1.22436 0.96186 1.02839 1.02599 1.21860 0.93429 0.98277 0.90711 0.89793 1.21317 0.80210 1.00955 0.96509 1.45751 1.07653 1.59296 1.23391 1.20364 0.89369 0.77821 0.82590 1.90719 1.69938 1.47391 1.33374 1.19839 0.92357 0.98350 0.96120 0.86477 1.21847 1.01934 0.93419 1.02881 1.23920 1.05324 1.00638 0.97107 1.20106 1.01817 0.96194 0.98991 1.20078 1.03282 1.01547 0.91638 1.25668 1.06840 1.00661 1.03131 1.84188 1.53154 1.24711 0.98275 1.60180 1.57880 1.09173 1.02433 1.21757 1.00103 0.95751 0.90990 1.19697 0.84916 0.88280 0.83751 1.90579 1.53846 1.15958 1.84210 1.42212 1.60086 1.11030 1.09578 1.19423 1.40425 0.97930 0.85664 0.86283 1.25049 0.97447 0.98415 0.95261 1.69616 1.44920 1.36617 1.00828 0.86672 0.79284 0.84919 0.78485 1.19674 1.20146 1.19498 0.91984 0.91790 0.91878 0.91387 0.91505 0.75430 0.92026 0.91017 0.90837 0.84334 0.84538 0.82212 0.82440 0.89513 0.93585 0.79720 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.16 37.16 0.34 -1.21 16 2 C 0.07 0.66 2.75 -67.71 -0.19 0.48 16 3 H 0.08 0.74 7.80 -51.93 -0.40 0.34 16 4 C 0.13 1.43 5.37 -4.04 -0.02 1.41 16 5 N -0.71 -7.93 5.28 -60.29 -0.32 -8.25 16 6 C 0.51 6.49 7.12 -10.99 -0.08 6.41 16 7 O -0.54 -8.50 15.25 5.56 0.08 -8.42 16 8 C -0.04 -0.45 3.10 -92.92 -0.29 -0.74 16 9 H 0.12 1.13 8.09 -51.93 -0.42 0.71 16 10 C -0.14 -1.18 9.01 37.16 0.33 -0.84 16 11 C -0.15 -1.72 4.60 -36.00 -0.17 -1.89 16 12 C -0.14 -1.51 10.01 -41.21 -0.41 -1.92 16 13 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 14 C -0.23 -2.20 11.23 29.04 0.33 -1.87 16 15 S 0.13 1.45 22.17 -107.50 -2.38 -0.94 16 16 N -0.66 -8.76 5.32 -107.99 -0.57 -9.33 16 17 C 0.05 0.68 5.96 -4.98 -0.03 0.65 16 18 C 0.45 9.48 7.82 -10.99 -0.09 9.40 16 19 O -0.56 -14.38 15.78 5.55 0.09 -14.29 16 20 N -0.59 -13.36 5.09 -10.96 -0.06 -13.42 16 21 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 22 H 0.12 3.76 7.39 -52.48 -0.39 3.38 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 25 Si 0.88 18.77 27.74 -169.99 -4.71 14.05 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 29 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 4.33 7.56 -40.82 -0.31 4.02 16 35 H 0.06 0.52 8.00 -51.93 -0.42 0.10 16 36 H 0.07 0.52 7.57 -51.93 -0.39 0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.36 5.17 8.17 -39.29 -0.32 4.85 16 42 H 0.09 1.09 8.06 -51.92 -0.42 0.67 16 43 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 44 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -33.73 389.75 -8.79 -42.52 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -6.63 Total: 16.05 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.93 Total: 0.59 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.17 Total: -55.44 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.17 Total: -22.71 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.05 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.38 Total: -0.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.73 -8.79 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690621676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.715 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds