Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 10 10 C 1.53002 * 109.47419 * 300.00197 * 8 6 5 11 11 C 1.50703 * 109.47064 * 180.02562 * 8 6 5 12 12 C 1.33388 * 125.20382 * 239.71674 * 11 8 6 13 13 C 1.38417 * 114.92210 * 179.86002 * 12 11 8 14 14 C 1.33389 * 114.92032 * 0.43225 * 13 12 11 15 15 S 1.75877 * 109.59412 * 359.77195 * 14 13 12 16 16 N 1.46905 * 109.47161 * 119.99449 * 2 1 3 17 17 C 1.46896 * 111.00168 * 275.00642 * 16 2 1 18 18 C 1.50702 * 109.47115 * 179.97438 * 17 16 2 19 19 O 1.21292 * 120.00118 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00164 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99583 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00447 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00477 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99664 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47013 * 90.00682 * 25 23 21 27 27 H 1.48504 * 109.46892 * 210.00109 * 25 23 21 28 28 H 1.48498 * 109.47317 * 330.00353 * 25 23 21 29 29 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 30 30 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 31 31 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 35 35 H 1.08992 * 109.47063 * 300.00072 * 10 8 6 36 36 H 1.09004 * 109.46733 * 60.00358 * 10 8 6 37 37 H 1.08996 * 109.47407 * 179.97438 * 10 8 6 38 38 H 1.08005 * 122.53718 * 0.02562 * 12 11 8 39 39 H 1.08002 * 122.54419 * 180.20201 * 13 12 11 40 40 H 1.08008 * 125.20252 * 179.78963 * 14 13 12 41 41 H 1.00907 * 110.99364 * 38.95732 * 16 2 1 42 42 H 1.09007 * 109.46974 * 299.99418 * 17 16 2 43 43 H 1.08997 * 109.47662 * 59.99422 * 17 16 2 44 44 H 0.97003 * 119.99961 * 359.97438 * 20 18 17 45 45 H 0.96996 * 120.00366 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 1 5.9637 -2.0990 -1.2423 10 6 6.2847 -0.1349 -2.0670 11 6 6.1774 -2.2473 -3.3607 12 6 6.8730 -3.3855 -3.3612 13 6 7.2249 -3.8534 -4.6155 14 6 6.8228 -3.0906 -5.6332 15 16 5.9429 -1.6987 -5.0153 16 7 2.0197 -0.6924 1.1995 17 6 2.0823 0.2227 2.3469 18 6 2.5872 -0.5216 3.5561 19 8 2.8668 -1.6988 3.4706 20 7 2.7280 0.1207 4.7326 21 6 3.1878 -0.5563 5.8325 22 1 3.4368 -1.6045 5.7563 23 6 3.3325 0.1057 7.0455 24 7 3.7727 -0.5433 8.0999 25 14 2.9012 1.9185 7.1774 26 1 1.4717 2.0611 7.5537 27 1 3.7519 2.5556 8.2146 28 1 3.1369 2.5800 5.8689 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.9824 -0.4627 -0.4314 35 1 5.9960 0.4273 -2.9549 36 1 5.9214 0.3794 -1.1772 37 1 7.3710 -0.2127 -2.0230 38 1 7.1391 -3.9041 -2.4520 39 1 7.7858 -4.7651 -4.7592 40 1 7.0088 -3.2963 -6.6770 41 1 1.4495 -1.4979 1.4101 42 1 2.7588 1.0463 2.1183 43 1 1.0870 0.6165 2.5525 44 1 2.5047 1.0622 4.8009 45 1 3.8741 -0.0810 8.9466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690621676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -64.538181 kcal Electronic energy + Delta-G solvation = -26406.027921 eV Core-core repulsion = 22549.072420 eV Total energy + Delta-G solvation = -3856.955500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.99059 -40.29105 -38.71940 -38.06190 -35.99006 -35.20156 -34.63063 -33.72004 -31.87254 -29.50805 -28.07046 -27.39882 -25.66770 -25.35268 -23.84523 -21.98422 -21.26447 -21.12843 -20.28556 -20.25935 -18.57116 -17.69134 -17.56308 -17.13864 -16.68828 -16.64049 -16.47540 -16.22856 -15.71616 -15.49505 -15.02914 -14.75391 -14.56310 -14.49961 -14.17670 -13.94903 -13.76558 -13.61134 -13.50266 -13.37675 -13.17931 -13.10446 -13.05827 -12.78775 -12.62652 -12.45512 -12.41425 -12.38914 -11.96653 -11.87357 -11.54537 -11.48647 -10.83248 -10.40518 -10.22408 -9.97044 -9.56445 -9.33384 -9.26543 -8.39090 -5.99897 0.10315 0.78424 1.17861 1.31763 1.37488 1.46466 1.65785 1.83602 2.00014 2.24960 2.34985 2.73868 3.17914 3.41698 3.54711 3.83052 3.87483 4.08461 4.10346 4.23211 4.25237 4.32086 4.35935 4.48526 4.59830 4.64422 4.67437 4.70648 4.79273 4.81306 4.87754 4.90569 5.01285 5.17827 5.23101 5.27906 5.40915 5.53341 5.55374 5.60788 5.92984 6.06329 6.34893 6.61979 6.63342 6.91376 7.28921 7.43286 8.00519 8.78569 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.002206 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.161068 B =12686.950195 C =13670.881056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 H 0.107 0.893 4 C 0.135 3.865 5 N -0.703 5.703 6 C 0.510 3.490 7 O -0.574 6.574 8 C -0.042 4.042 9 H 0.122 0.878 10 C -0.137 4.137 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.225 4.225 15 S 0.105 5.895 16 N -0.678 5.678 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.614 6.614 20 N -0.592 5.592 21 C -0.326 4.326 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.278 1.278 28 H -0.227 1.227 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.184 0.816 41 H 0.345 0.655 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 7.562 -25.343 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 H 0.125 0.875 4 C 0.010 3.990 5 N -0.354 5.354 6 C 0.296 3.704 7 O -0.454 6.454 8 C -0.065 4.065 9 H 0.140 0.860 10 C -0.195 4.195 11 C -0.287 4.287 12 C -0.181 4.181 13 C -0.174 4.174 14 C -0.360 4.360 15 S 0.370 5.630 16 N -0.310 5.310 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.455 4.455 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.184 1.184 27 H -0.203 1.203 28 H -0.150 1.150 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.201 0.799 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.953 7.780 -26.703 27.829 hybrid contribution -0.160 -0.815 2.021 2.185 sum 0.793 6.964 -24.682 25.658 Atomic orbital electron populations 1.22396 0.94965 1.02679 1.03643 1.21862 0.94282 0.98616 0.88369 0.87531 1.21356 0.79808 1.00266 0.97522 1.45761 1.07968 1.58592 1.23045 1.20763 0.90272 0.77200 0.82199 1.90696 1.70835 1.49044 1.34811 1.19884 0.90915 0.99701 0.96034 0.85984 1.21834 1.02376 0.92025 1.03275 1.24114 1.05949 1.01228 0.97369 1.20407 1.01674 0.96096 0.99967 1.20371 1.03436 1.02382 0.91247 1.25989 1.05966 0.99717 1.04372 1.84212 1.54004 1.25987 0.98811 1.60155 1.58638 1.09172 1.03049 1.21689 1.02041 0.95363 0.87884 1.21054 0.82387 0.87945 0.84949 1.90564 1.55286 1.18756 1.85259 1.42037 1.60695 1.11801 1.08827 1.18982 1.42306 0.95966 0.88281 0.92795 1.26137 0.96509 1.05034 0.93929 1.69808 1.46479 1.39627 1.01801 0.85364 0.79224 0.76543 0.80363 1.18373 1.20336 1.14998 0.91518 0.90088 0.92750 0.90470 0.93409 0.74898 0.92330 0.89811 0.89930 0.83386 0.82360 0.79877 0.83634 0.86159 0.90456 0.77465 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 9.16 71.98 0.66 -1.84 16 2 C 0.08 1.29 2.75 44.91 0.12 1.41 16 3 H 0.11 1.35 7.80 -2.39 -0.02 1.33 16 4 C 0.13 2.66 5.37 86.38 0.46 3.13 16 5 N -0.70 -14.84 5.28 -463.06 -2.45 -17.29 16 6 C 0.51 12.68 7.12 87.66 0.62 13.30 16 7 O -0.57 -18.32 15.25 -3.03 -0.05 -18.36 16 8 C -0.04 -0.86 3.10 -12.28 -0.04 -0.90 16 9 H 0.12 2.30 8.09 -2.39 -0.02 2.28 16 10 C -0.14 -2.09 9.01 71.98 0.65 -1.44 16 11 C -0.17 -3.79 4.60 24.59 0.11 -3.68 16 12 C -0.15 -3.15 10.01 21.21 0.21 -2.94 16 13 C -0.14 -2.66 10.18 21.21 0.22 -2.45 16 14 C -0.22 -4.11 11.23 66.72 0.75 -3.36 16 15 S 0.11 2.29 22.17 -56.49 -1.25 1.04 16 16 N -0.68 -16.38 5.32 -495.57 -2.63 -19.01 16 17 C 0.06 1.58 5.96 85.56 0.51 2.09 16 18 C 0.45 18.58 7.82 87.66 0.69 19.27 16 19 O -0.61 -32.18 15.78 -3.07 -0.05 -32.23 16 20 N -0.59 -26.19 5.09 -306.99 -1.56 -27.75 16 21 C -0.33 -18.49 10.16 84.04 0.85 -17.64 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.94 -55.60 13.96 21.66 0.30 -55.30 16 25 Si 0.97 37.29 27.74 68.60 1.90 39.19 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.23 -7.15 6.52 99.48 0.65 -6.50 16 29 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.41 7.97 7.56 -92.71 -0.70 7.27 16 35 H 0.06 0.93 8.00 -2.39 -0.02 0.91 16 36 H 0.08 1.05 7.57 -2.39 -0.02 1.03 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.34 9.71 8.17 -89.69 -0.73 8.98 16 42 H 0.12 2.35 8.06 -2.38 -0.02 2.33 16 43 H 0.08 1.57 7.44 -2.39 -0.02 1.55 16 44 H 0.39 14.03 5.76 -92.71 -0.53 13.49 16 45 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.74 389.75 -0.49 -80.23 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -0.99 Total: 45.02 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.29 Total: 4.47 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -6.34 Total: -119.35 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.09 Total: -50.59 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.19 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.25 Total: 1.04 kcal Total: -79.74 -0.49 -80.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690621676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.688 kcal (2) G-P(sol) polarization free energy of solvation -79.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds