Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46496 * 109.47535 * 185.00041 * 4 2 1 6 6 C 1.34777 * 120.00105 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00049 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.47033 * 300.00347 * 8 6 5 10 10 C 1.53004 * 109.46873 * 60.00469 * 8 6 5 11 11 C 1.50699 * 109.47228 * 180.02562 * 8 6 5 12 12 C 1.33384 * 125.20601 * 120.00107 * 11 8 6 13 13 C 1.38423 * 114.92744 * 179.97438 * 12 11 8 14 14 C 1.33392 * 114.91600 * 359.97438 * 13 12 11 15 15 S 1.75885 * 125.20124 * 299.69641 * 11 8 6 16 16 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 17 17 C 1.46904 * 110.99716 * 274.99847 * 16 2 1 18 18 C 1.50700 * 109.47105 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99799 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99763 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99668 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99955 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00105 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99749 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00210 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47538 * 89.99675 * 25 23 21 27 27 H 1.48497 * 109.47015 * 209.99873 * 25 23 21 28 28 H 1.48505 * 109.46833 * 329.99554 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 34 34 H 0.97001 * 120.00379 * 0.02562 * 5 4 2 35 35 H 1.08996 * 109.47468 * 59.99608 * 10 8 6 36 36 H 1.09002 * 109.46916 * 180.02562 * 10 8 6 37 37 H 1.09001 * 109.46982 * 299.99590 * 10 8 6 38 38 H 1.08000 * 122.53742 * 0.02562 * 12 11 8 39 39 H 1.08001 * 122.54176 * 180.02562 * 13 12 11 40 40 H 1.08001 * 125.20129 * 180.02562 * 14 13 12 41 41 H 1.00900 * 110.99634 * 38.94573 * 16 2 1 42 42 H 1.08996 * 109.46868 * 300.00084 * 17 16 2 43 43 H 1.09007 * 109.46973 * 59.99616 * 17 16 2 44 44 H 0.96997 * 120.00718 * 0.02562 * 20 18 17 45 45 H 0.96993 * 119.99702 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4284 -2.1911 7 8 3.5700 -1.8826 -3.1403 8 6 5.6750 -1.5361 -2.1311 9 1 6.1093 -0.5374 -2.0850 10 6 6.0802 -2.3265 -0.8852 11 6 6.1774 -2.2455 -3.3620 12 6 7.0228 -1.7298 -4.2556 13 6 7.3438 -2.5702 -5.3077 14 6 6.7595 -3.7686 -5.2682 15 16 5.7446 -3.8830 -3.8362 16 7 2.0197 -0.6926 1.1994 17 6 2.0825 0.2226 2.3469 18 6 2.5874 -0.5218 3.5560 19 8 2.8678 -1.6988 3.4702 20 7 2.7283 0.1205 4.7324 21 6 3.1882 -0.5566 5.8323 22 1 3.4378 -1.6045 5.7559 23 6 3.3330 0.1055 7.0454 24 7 3.0297 1.3808 7.1382 25 14 3.9602 -0.8169 8.5438 26 1 5.4411 -0.7227 8.5991 27 1 3.3799 -0.2179 9.7724 28 1 3.5580 -2.2434 8.4511 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1584 -2.1369 34 1 3.9824 -0.4629 -0.4316 35 1 5.6459 -3.3251 -0.9312 36 1 7.1666 -2.4039 -0.8415 37 1 5.7169 -1.8129 0.0049 38 1 7.4270 -0.7325 -4.1647 39 1 8.0171 -2.2780 -6.1000 40 1 6.8923 -4.5505 -6.0013 41 1 1.4495 -1.4979 1.4101 42 1 2.7589 1.0461 2.1182 43 1 1.0871 0.6164 2.5525 44 1 2.5045 1.0618 4.8010 45 1 3.1311 1.8430 7.9849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690621677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -46.140639 kcal Electronic energy + Delta-G solvation = -26424.800391 eV Core-core repulsion = 22568.642668 eV Total energy + Delta-G solvation = -3856.157723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99547 -38.52371 -37.83087 -36.90809 -34.25736 -34.02471 -33.59439 -31.33596 -30.69315 -28.70542 -26.65573 -26.23466 -24.76394 -23.98180 -23.00549 -21.05249 -20.18199 -19.47605 -19.35274 -17.98343 -17.60891 -16.66278 -16.28642 -15.94557 -15.68127 -15.31691 -15.16961 -14.70249 -14.58664 -14.05707 -13.96693 -13.66599 -13.34615 -13.21786 -13.09588 -12.81758 -12.61910 -12.56192 -12.32829 -12.23163 -12.21475 -11.78336 -11.72682 -11.62294 -11.58220 -11.43743 -11.08493 -11.01453 -10.68969 -10.43192 -10.26327 -9.80999 -9.55590 -8.98000 -8.75091 -8.55194 -8.41655 -8.16516 -8.01234 -6.46547 -3.87476 0.91895 1.60373 2.00319 2.61996 2.65451 3.14423 3.23646 3.26818 3.29277 3.84844 4.01551 4.25355 4.38457 4.70072 4.74725 4.89128 4.95423 4.96309 5.07574 5.10259 5.17073 5.22906 5.38783 5.43345 5.46749 5.58124 5.61992 5.66114 5.67726 5.72857 5.84576 5.95402 5.98096 6.01218 6.05726 6.18972 6.20639 6.37413 6.48823 7.09026 7.50728 7.53737 7.59246 8.01170 8.25807 8.55721 9.13092 9.48985 10.00000 10.71047 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014357 B = 0.002242 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.763134 B =12488.035240 C =13827.679405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.709 5.709 6 C 0.513 3.487 7 O -0.538 6.538 8 C -0.041 4.041 9 H 0.112 0.888 10 C -0.145 4.145 11 C -0.152 4.152 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.229 4.229 15 S 0.141 5.859 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.160 0.840 41 H 0.353 0.647 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -1.200 -20.700 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.360 5.360 6 C 0.298 3.702 7 O -0.415 6.415 8 C -0.065 4.065 9 H 0.130 0.870 10 C -0.203 4.203 11 C -0.270 4.270 12 C -0.174 4.174 13 C -0.167 4.167 14 C -0.365 4.365 15 S 0.407 5.593 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.894 -3.263 -20.808 21.260 hybrid contribution 0.313 1.712 0.797 1.915 sum 3.208 -1.551 -20.011 20.325 Atomic orbital electron populations 1.22433 0.96251 1.02735 1.02605 1.21855 0.93387 0.98303 0.90760 0.89804 1.21318 0.80164 1.00905 0.96586 1.45756 1.07689 1.59270 1.23303 1.20385 0.89381 0.77984 0.82480 1.90716 1.69966 1.47515 1.33337 1.19831 0.92838 1.00859 0.92927 0.87012 1.21871 1.02608 1.00517 0.95304 1.23955 1.03609 0.98590 1.00844 1.20040 1.01008 1.01460 0.94916 1.20049 1.02785 0.93768 1.00137 1.25697 1.04792 1.02376 1.03614 1.84361 1.45152 1.11424 1.18412 1.60191 1.57692 1.09194 1.02528 1.21723 1.00060 0.95624 0.90917 1.19797 0.85314 0.88256 0.84191 1.90536 1.55326 1.16208 1.84606 1.41869 1.57671 1.12442 1.07971 1.19692 1.40021 0.96442 0.86744 0.87924 1.25267 0.97604 0.95786 0.99276 1.69608 1.48545 1.08852 1.27251 0.85859 0.78840 0.79496 0.80122 1.20360 1.20935 1.19419 0.91864 0.91930 0.91974 0.91558 0.91452 0.75403 0.91816 0.91035 0.90342 0.84576 0.84661 0.82230 0.82637 0.89655 0.93724 0.77491 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 2 C 0.07 0.71 2.75 -67.71 -0.19 0.53 16 3 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 4 C 0.13 1.50 5.37 -4.04 -0.02 1.48 16 5 N -0.71 -8.22 5.28 -60.30 -0.32 -8.54 16 6 C 0.51 6.63 7.13 -10.98 -0.08 6.55 16 7 O -0.54 -8.66 15.27 5.56 0.08 -8.57 16 8 C -0.04 -0.44 3.10 -92.92 -0.29 -0.73 16 9 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 10 C -0.15 -1.51 9.01 37.16 0.33 -1.17 16 11 C -0.15 -1.75 4.60 -36.01 -0.17 -1.92 16 12 C -0.14 -1.49 10.01 -41.21 -0.41 -1.90 16 13 C -0.14 -1.32 10.18 -41.21 -0.42 -1.74 16 14 C -0.23 -2.28 11.23 29.04 0.33 -1.95 16 15 S 0.14 1.67 22.19 -107.50 -2.39 -0.72 16 16 N -0.66 -9.20 5.32 -107.99 -0.57 -9.78 16 17 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 18 C 0.44 9.68 7.82 -10.99 -0.09 9.60 16 19 O -0.58 -14.96 15.78 5.55 0.09 -14.87 16 20 N -0.56 -13.62 5.29 -10.96 -0.06 -13.67 16 21 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 25 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 31 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 4.53 7.56 -40.82 -0.31 4.22 16 35 H 0.06 0.73 7.99 -51.93 -0.42 0.32 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.83 7.56 -51.93 -0.39 0.44 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.35 5.38 8.17 -39.29 -0.32 5.05 16 42 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 43 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 44 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.10 392.89 -9.14 -41.23 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -6.67 Total: 16.22 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.93 Total: 0.38 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.23 Total: -55.18 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.39 Total: -0.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.10 -9.14 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690621677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.907 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds